| GenBank top hits | e value | %identity | Alignment |
|---|
| KAG7029701.1 RNA polymerase sigma factor sigC [Cucurbita argyrosperma subsp. argyrosperma] | 1.3e-272 | 88.08 | Show/hide |
Query: MGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREASFNSGRLSFFSSICEEGESIYRETLKTCTCLSEAPQTSTDDLLDLEER--EINSRAKSLSHLH
MGTSFRPNLKW FQIQTHSR+ SPSKLSPYASKGREASFNSGRLSFFSS CEEGE+I RE LKT TCLSEAPQT D LLDLEE+ EINS AKSL HL
Subjt: MGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREASFNSGRLSFFSSICEEGESIYRETLKTCTCLSEAPQTSTDDLLDLEER--EINSRAKSLSHLH
Query: YGIKNTGPSKVEDNFSSCTGLPTGKASPFGVLMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPIEDGGDHDVNQ
YG KN+GPSKVEDNF SCT LPTG+ASPFG+LMENLDVLEETF ESGMLSLERDI+LQLTKLGALEFFN CLSRTLK +SSFHDLSDLPIE GGDH+VNQ
Subjt: YGIKNTGPSKVEDNFSSCTGLPTGKASPFGVLMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPIEDGGDHDVNQ
Query: KNDGQNDDIIVYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIA
K D QND+I+VYSGKRAGRRSVK+RAMDNADKVAS+PLATRAAKEKFR+L RK+ SNS+KRR IVA+NEAEMSTGVKVVANLERIRETLEKESGR A
Subjt: KNDGQNDDIIVYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIA
Query: SMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
SMSCWADAA +DIKDLQKQLQFGWFCQDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGV RFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRG
Subjt: SMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
Query: IQIPWSLTKVINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEG
IQIPWSLTK INQIQKARKALNN RRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQK+ DGLNMKYME TADTSI+SPE+TVKR+LMKKDIFNLLE
Subjt: IQIPWSLTKVINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEG
Query: LESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD
LESRERQVLVLRYGLMD QPKSLEEIGKLL VSKEWVRKIE+KA TKLKNEETVRNLSHYLD
Subjt: LESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD
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| XP_008444981.1 PREDICTED: RNA polymerase sigma factor sigC [Cucumis melo] | 1.6e-283 | 90.54 | Show/hide |
Query: MMGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREASFNSGRLSFFSSICEEGESIYRETLKTCTCLSEAPQTSTDDLLDLEEREINSRAKSLSHLHY
MMGT FRPNLKWGFQIQTHS K SPSKLSPYASKGREA+FNSGRLSFFSSICEEGESI RETLKT TCLSEAPQTS DDLL+LEE E+NS AKSLS LHY
Subjt: MMGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREASFNSGRLSFFSSICEEGESIYRETLKTCTCLSEAPQTSTDDLLDLEEREINSRAKSLSHLHY
Query: GIKNTGPSKVEDNFSSCTGLPTGKASPFGVLMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGGDHDVNQKN
GIK+T PSKVEDNFSS T +PTGKASPFG+LMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLP+EDG DH+VNQK
Subjt: GIKNTGPSKVEDNFSSCTGLPTGKASPFGVLMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGGDHDVNQKN
Query: DGQNDDIIVYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIASM
+ QN D+ VYSGKRAGRRSVKKRAMDNADKVAS+PLATRA KEK + IFSRK+ SNS KRRL+VA+NEAEMSTG+KVVANLERIRETLEKESGRIASM
Subjt: DGQNDDIIVYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIASM
Query: SCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
SCWA+AA VDIKDLQKQLQFGWFC+DELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGV RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Subjt: SCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Query: IPWSLTKVINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGLE
IPWSLTK INQIQKARK LN G RRYSDDDIA+ATGLPLAKVRVASNCLKVVGSVDQKM DGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFN+L+GLE
Subjt: IPWSLTKVINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGLE
Query: SRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD
SRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETV+NLSHYLD
Subjt: SRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD
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| XP_022131819.1 RNA polymerase sigma factor sigC isoform X1 [Momordica charantia] | 4.0e-274 | 88.24 | Show/hide |
Query: MGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREASFNSGRLSFFSSICEEGESIYRETLKTCTCLSEAPQTSTDDLLDLEEREINSRAKSLSHLHYG
MGTSFRPNLKW FQ+QTHSR SPSK P+ASKGREASFNS RLSFFS+ICEEGES RETLKT TCLSEAPQTS DDLLDL+E EINSRA+ LSH HYG
Subjt: MGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREASFNSGRLSFFSSICEEGESIYRETLKTCTCLSEAPQTSTDDLLDLEEREINSRAKSLSHLHYG
Query: IKNTGPSKVEDNFSSCTGLPTGKASPFGVLMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK--TSSFHDLSDLPIEDGGDHDVNQK
IKNTGPSK+EDNFSSCT LPTGKAS FG+LMENLDVLEE F ESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK TSSF DLSDLPIEDGG H+VNQK
Subjt: IKNTGPSKVEDNFSSCTGLPTGKASPFGVLMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK--TSSFHDLSDLPIEDGGDHDVNQK
Query: NDGQNDDIIVYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIAS
D QNDDIIVYSGK+ GRRS+K+RA D ADKVASQP AT AAKEKF N A F RKR NSR+RRL+VA+NEAEMSTGVKVVANLERIRETLEKES + AS
Subjt: NDGQNDDIIVYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIAS
Query: MSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
MSCWADAAG+DIKDL KQLQFGWFCQ+ELLRSTNSLVLFLAKKYRC+GLPMEDLVQAGA+GVLQGV RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Subjt: MSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Query: QIPWSLTKVINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGL
QIPWSLTK INQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKM DGLNMKYMEFTADTSIQSPEETVK+KLMKKDIFNLLEGL
Subjt: QIPWSLTKVINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGL
Query: ESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD
E RERQVL LRYGL DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEET NL HYLD
Subjt: ESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD
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| XP_022996944.1 RNA polymerase sigma factor sigC-like isoform X2 [Cucurbita maxima] | 2.6e-273 | 88.21 | Show/hide |
Query: MGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREASFNSGRLSFFSSICEEGESIYRETLKTCTCLSEAPQTSTDDLLDLEEREINSRAKSLSHLHYG
MGTSFRPNLKW FQIQTHSR+ SPSKLSPYASKGREASFNSGRLSFFSS CEEGE+I RE LKT TCLSEAPQT D LLDLEE+EINS AKSLSHLHYG
Subjt: MGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREASFNSGRLSFFSSICEEGESIYRETLKTCTCLSEAPQTSTDDLLDLEEREINSRAKSLSHLHYG
Query: IKNTGPSKVEDNFSSCTGLPTGKASPFGVLMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPIEDGGDHDVNQKN
KN+GPSKVEDNF SCT LPTG+ASPF +LMENLDVLEETF ESGMLSLERDIVLQLTKLGALEFFN CLSRTLK +SSF DLSDLPIE GGDH+VNQK
Subjt: IKNTGPSKVEDNFSSCTGLPTGKASPFGVLMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPIEDGGDHDVNQKN
Query: DGQNDDIIVYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIASM
D QN +IIVYSGKRAGRRSVK+RAMDNADKVAS+PLATRAAKEKFR+ SRK+ SNS+KRR IVA+NEAEMSTGVKVVANLERIRETLEKESGR ASM
Subjt: DGQNDDIIVYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIASM
Query: SCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
SCWADA+ +DIKDLQKQLQFGWFCQDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGV RFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRGIQ
Subjt: SCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Query: IPWSLTKVINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGLE
IPWSLTK INQIQKARKALNN RRYSDDD+AKATGLPLAKVRVASNCLKVVGSVDQK+ DGLNMKYME TADTSI+SPE+TVKR+LMKKDIFNLLE LE
Subjt: IPWSLTKVINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGLE
Query: SRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD
SRERQVLVLRYGLMD QPKSLEEIGKLL VSKEWVRKIE+KA TKLKNEETVRNLSHYLD
Subjt: SRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD
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| XP_038884658.1 RNA polymerase sigma factor sigC isoform X1 [Benincasa hispida] | 4.9e-280 | 89.36 | Show/hide |
Query: MMGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREASFNSGRLSFFSSICEEGESIYRETLKTCTCLSEAPQTSTDDLLDLEEREINSRAKSLSHLHY
MMGTSFRPNLKWGFQIQTHSRKTSPSKL PYASKGREA+FNSGRLSFFSSI EEGESI RETLKT TCLSEAPQTS DDLL+LEE E+N AKSLS LHY
Subjt: MMGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREASFNSGRLSFFSSICEEGESIYRETLKTCTCLSEAPQTSTDDLLDLEEREINSRAKSLSHLHY
Query: GIKNTGPSKVEDNFSSCTGLPTGKASPFGVLMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPI----EDGGDHDV
GIKNT PSKVEDNFSSCT P+GKASPFG+LMENLDVLEETF ESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPI ED GDH+V
Subjt: GIKNTGPSKVEDNFSSCTGLPTGKASPFGVLMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPI----EDGGDHDV
Query: NQKNDGQNDDIIVYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGR
NQK +NDDIIVYSGKRA RRSVKKRAMD+ADKV SQPLATRAAKEK + AI SRK+ SNSRKRRLI+A+NEAEMSTGVKVVANLERIRETLEKESGR
Subjt: NQKNDGQNDDIIVYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGR
Query: IASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNS
+ SMSCWA+AAGVDIKDL+KQLQFGWFCQDELLRSTNSL+LFLA+KYRCSGLPMEDLVQAG+LGVLQGV RFDPKRGFRFSTYIQYWIRKSMSRVVARN+
Subjt: IASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNS
Query: RGIQIPWSLTKVINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLL
RGIQIPWSLTK INQIQKARK LNNG RRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKM DGLNMKYMEFTAD SIQSPEETVK+KLMKKDIFN+L
Subjt: RGIQIPWSLTKVINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLL
Query: EGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD
EGLESRERQVLVLRYGL+DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKL++EETVRN SHYLD
Subjt: EGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A1S3BBM8 RNA polymerase sigma factor sigC | 7.9e-284 | 90.54 | Show/hide |
Query: MMGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREASFNSGRLSFFSSICEEGESIYRETLKTCTCLSEAPQTSTDDLLDLEEREINSRAKSLSHLHY
MMGT FRPNLKWGFQIQTHS K SPSKLSPYASKGREA+FNSGRLSFFSSICEEGESI RETLKT TCLSEAPQTS DDLL+LEE E+NS AKSLS LHY
Subjt: MMGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREASFNSGRLSFFSSICEEGESIYRETLKTCTCLSEAPQTSTDDLLDLEEREINSRAKSLSHLHY
Query: GIKNTGPSKVEDNFSSCTGLPTGKASPFGVLMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGGDHDVNQKN
GIK+T PSKVEDNFSS T +PTGKASPFG+LMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLP+EDG DH+VNQK
Subjt: GIKNTGPSKVEDNFSSCTGLPTGKASPFGVLMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGGDHDVNQKN
Query: DGQNDDIIVYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIASM
+ QN D+ VYSGKRAGRRSVKKRAMDNADKVAS+PLATRA KEK + IFSRK+ SNS KRRL+VA+NEAEMSTG+KVVANLERIRETLEKESGRIASM
Subjt: DGQNDDIIVYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIASM
Query: SCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
SCWA+AA VDIKDLQKQLQFGWFC+DELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGV RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Subjt: SCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Query: IPWSLTKVINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGLE
IPWSLTK INQIQKARK LN G RRYSDDDIA+ATGLPLAKVRVASNCLKVVGSVDQKM DGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFN+L+GLE
Subjt: IPWSLTKVINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGLE
Query: SRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD
SRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETV+NLSHYLD
Subjt: SRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD
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| A0A6J1BRC1 RNA polymerase sigma factor sigC isoform X1 | 1.9e-274 | 88.24 | Show/hide |
Query: MGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREASFNSGRLSFFSSICEEGESIYRETLKTCTCLSEAPQTSTDDLLDLEEREINSRAKSLSHLHYG
MGTSFRPNLKW FQ+QTHSR SPSK P+ASKGREASFNS RLSFFS+ICEEGES RETLKT TCLSEAPQTS DDLLDL+E EINSRA+ LSH HYG
Subjt: MGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREASFNSGRLSFFSSICEEGESIYRETLKTCTCLSEAPQTSTDDLLDLEEREINSRAKSLSHLHYG
Query: IKNTGPSKVEDNFSSCTGLPTGKASPFGVLMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK--TSSFHDLSDLPIEDGGDHDVNQK
IKNTGPSK+EDNFSSCT LPTGKAS FG+LMENLDVLEE F ESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK TSSF DLSDLPIEDGG H+VNQK
Subjt: IKNTGPSKVEDNFSSCTGLPTGKASPFGVLMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK--TSSFHDLSDLPIEDGGDHDVNQK
Query: NDGQNDDIIVYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIAS
D QNDDIIVYSGK+ GRRS+K+RA D ADKVASQP AT AAKEKF N A F RKR NSR+RRL+VA+NEAEMSTGVKVVANLERIRETLEKES + AS
Subjt: NDGQNDDIIVYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIAS
Query: MSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
MSCWADAAG+DIKDL KQLQFGWFCQ+ELLRSTNSLVLFLAKKYRC+GLPMEDLVQAGA+GVLQGV RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Subjt: MSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Query: QIPWSLTKVINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGL
QIPWSLTK INQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKM DGLNMKYMEFTADTSIQSPEETVK+KLMKKDIFNLLEGL
Subjt: QIPWSLTKVINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGL
Query: ESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD
E RERQVL LRYGL DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEET NL HYLD
Subjt: ESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD
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| A0A6J1HEX7 RNA polymerase sigma factor sigC-like | 9.0e-272 | 88.08 | Show/hide |
Query: MGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREASFNSGRLSFFSSICEEGESIYRETLKTCTCLSEAPQTSTDDLLDLEER--EINSRAKSLSHLH
MGTSFRPNLKW FQIQTHSR+ SPSKLSPYASKGREASFNSGRLSFFSS CEEGE+I RE LKT TCLSEAPQT D LLDLEE+ EINS AKSL HL
Subjt: MGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREASFNSGRLSFFSSICEEGESIYRETLKTCTCLSEAPQTSTDDLLDLEER--EINSRAKSLSHLH
Query: YGIKNTGPSKVEDNFSSCTGLPTGKASPFGVLMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPIEDGGDHDVNQ
YG KN+GPSKVEDNF SCT LPTG+ASPFG+LMENLDVLEETF ESGMLSLERDIVLQLTKLGALEFFN CLSRTLK +SSF DLSDLPIE GGDH+VNQ
Subjt: YGIKNTGPSKVEDNFSSCTGLPTGKASPFGVLMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPIEDGGDHDVNQ
Query: KNDGQNDDIIVYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIA
K D QND+IIVYSGKRAGRRSVK+RAMDNADKVAS+PLATRAAKEKFR+ SRK+ SNS+KRR IVA+NEAEMSTGVKVVANLERIRET EKESGR A
Subjt: KNDGQNDDIIVYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIA
Query: SMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
SMSCWADAA +DIKDLQKQLQFGWFCQDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGV RFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRG
Subjt: SMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
Query: IQIPWSLTKVINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEG
IQIPWSLTK INQIQKARKALNN RRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQK+ DGLNMKYME TADTSI+SPE+TVKR+LMKKDIFNLLE
Subjt: IQIPWSLTKVINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEG
Query: LESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD
LESRERQVLVLRYGLMD QPKSLEEIGKLL VSKEWVRKIE+KA TKLKNEETVRNLSHYLD
Subjt: LESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD
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| A0A6J1KA34 RNA polymerase sigma factor sigC-like isoform X2 | 1.3e-273 | 88.21 | Show/hide |
Query: MGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREASFNSGRLSFFSSICEEGESIYRETLKTCTCLSEAPQTSTDDLLDLEEREINSRAKSLSHLHYG
MGTSFRPNLKW FQIQTHSR+ SPSKLSPYASKGREASFNSGRLSFFSS CEEGE+I RE LKT TCLSEAPQT D LLDLEE+EINS AKSLSHLHYG
Subjt: MGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREASFNSGRLSFFSSICEEGESIYRETLKTCTCLSEAPQTSTDDLLDLEEREINSRAKSLSHLHYG
Query: IKNTGPSKVEDNFSSCTGLPTGKASPFGVLMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPIEDGGDHDVNQKN
KN+GPSKVEDNF SCT LPTG+ASPF +LMENLDVLEETF ESGMLSLERDIVLQLTKLGALEFFN CLSRTLK +SSF DLSDLPIE GGDH+VNQK
Subjt: IKNTGPSKVEDNFSSCTGLPTGKASPFGVLMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPIEDGGDHDVNQKN
Query: DGQNDDIIVYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIASM
D QN +IIVYSGKRAGRRSVK+RAMDNADKVAS+PLATRAAKEKFR+ SRK+ SNS+KRR IVA+NEAEMSTGVKVVANLERIRETLEKESGR ASM
Subjt: DGQNDDIIVYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIASM
Query: SCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
SCWADA+ +DIKDLQKQLQFGWFCQDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGV RFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRGIQ
Subjt: SCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Query: IPWSLTKVINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGLE
IPWSLTK INQIQKARKALNN RRYSDDD+AKATGLPLAKVRVASNCLKVVGSVDQK+ DGLNMKYME TADTSI+SPE+TVKR+LMKKDIFNLLE LE
Subjt: IPWSLTKVINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGLE
Query: SRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD
SRERQVLVLRYGLMD QPKSLEEIGKLL VSKEWVRKIE+KA TKLKNEETVRNLSHYLD
Subjt: SRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD
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| A0A6J1KCF5 RNA polymerase sigma factor sigC-like isoform X1 | 4.1e-272 | 87.9 | Show/hide |
Query: MGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREASFNSGRLSFFSSICEEGESIYRETLKTCTCLSEAPQTSTDDLLDLEER--EINSRAKSLSHLH
MGTSFRPNLKW FQIQTHSR+ SPSKLSPYASKGREASFNSGRLSFFSS CEEGE+I RE LKT TCLSEAPQT D LLDLEE+ EINS AKSLSHLH
Subjt: MGTSFRPNLKWGFQIQTHSRKTSPSKLSPYASKGREASFNSGRLSFFSSICEEGESIYRETLKTCTCLSEAPQTSTDDLLDLEER--EINSRAKSLSHLH
Query: YGIKNTGPSKVEDNFSSCTGLPTGKASPFGVLMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPIEDGGDHDVNQ
YG KN+GPSKVEDNF SCT LPTG+ASPF +LMENLDVLEETF ESGMLSLERDIVLQLTKLGALEFFN CLSRTLK +SSF DLSDLPIE GGDH+VNQ
Subjt: YGIKNTGPSKVEDNFSSCTGLPTGKASPFGVLMENLDVLEETFAESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPIEDGGDHDVNQ
Query: KNDGQNDDIIVYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIA
K D QN +IIVYSGKRAGRRSVK+RAMDNADKVAS+PLATRAAKEKFR+ SRK+ SNS+KRR IVA+NEAEMSTGVKVVANLERIRETLEKESGR A
Subjt: KNDGQNDDIIVYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIA
Query: SMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
SMSCWADA+ +DIKDLQKQLQFGWFCQDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGV RFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRG
Subjt: SMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
Query: IQIPWSLTKVINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEG
IQIPWSLTK INQIQKARKALNN RRYSDDD+AKATGLPLAKVRVASNCLKVVGSVDQK+ DGLNMKYME TADTSI+SPE+TVKR+LMKKDIFNLLE
Subjt: IQIPWSLTKVINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEG
Query: LESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD
LESRERQVLVLRYGLMD QPKSLEEIGKLL VSKEWVRKIE+KA TKLKNEETVRNLSHYLD
Subjt: LESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD
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| SwissProt top hits | e value | %identity | Alignment |
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| O22056 RNA polymerase sigma factor sigB | 9.9e-50 | 30.96 | Show/hide |
Query: TLKTSSFHDLSDLPIEDGGDHDVNQKNDGQNDDIIVYSGKRAGRRSVKKRAMDN------ADKVASQPLATR-AAKEKFRNLAIFSRKRGSNSRKRRLIV
T S+ + DL E +V + + + V S ++ R++ + + ++ + K S P R A+E N + + ++S K L+
Subjt: TLKTSSFHDLSDLPIEDGGDHDVNQKNDGQNDDIIVYSGKRAGRRSVKKRAMDN------ADKVASQPLATR-AAKEKFRNLAIFSRKRGSNSRKRRLIV
Query: AQNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVG
+ E E+S G++ + LER++ L + SGR + + WA AAGVD K L++++ G C+D++++S LV+ +AK Y+ +G+ ++DLVQ G G+++G
Subjt: AQNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVG
Query: RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKVINQIQKARKALNNGSRRY-SDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNM
+FD +GF+FSTY +WI++++ + ++ SR I++P+ + + ++++ARK L + + ++ +++IA+ATGL + ++ K S+DQK+ N+
Subjt: RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKVINQIQKARKALNNGSRRY-SDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNM
Query: KYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYL
K E AD + E+ + ++ M++D+ +L+ L +RE+QV+ R+G+ D + K+L+EIG+++ VS+E VR+IE A KLKN++ +L YL
Subjt: KYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYL
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| O24621 RNA polymerase sigma factor sigC | 3.6e-116 | 46.01 | Show/hide |
Query: RLSFFSSICEEGESIYRETLKTCTCLSEAPQTSTDDL-LDLEEREINSRAKSLSHLHYGIKNTGPSKVEDNFSSCTGLPTGKASPFGVLMENLDVLEETF
R SF SS+ EE ++LK C C S +P T+ +++ ++L++ + +N G E ++SS + L + +L +NL LEETF
Subjt: RLSFFSSICEEGESIYRETLKTCTCLSEAPQTSTDDL-LDLEEREINSRAKSLSHLHYGIKNTGPSKVEDNFSSCTGLPTGKASPFGVLMENLDVLEETF
Query: AESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGGDHDVNQKNDGQNDDIIVYSGKRAGRRSVKKRA------MDNADKVASQPL
+ +ERDI+LQ+ KLGA E F TCLSR +S LSD + N + V S RR VKK+A +N D+ +S P+
Subjt: AESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGGDHDVNQKNDGQNDDIIVYSGKRAGRRSVKKRA------MDNADKVASQPL
Query: ATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLV
R + N+ + +R RK+R +++NE EMSTGVK+VA++ERIR LE+ESG++AS+SCWA AAG++ K L + L +GW+C+DEL++ST SLV
Subjt: ATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLV
Query: LFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKVINQIQKARKAL--NNGSRRYSDDDIAKA
LFLA+ YR G+ EDL+QAG +GVLQG RFD RG++FSTY+QYWIRKSMS +V+R++RG+ IP S+ + IN IQKARK L ++G + +D++IAK
Subjt: LFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKVINQIQKARKAL--NNGSRRYSDDDIAKA
Query: TGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEW
TG + K+R A+ CLKVVGS+D+K+ D K++EFT DT+++SPEE V R+ ++DI +LLEGLE RE+QV+VLRYGL D++PKSLEEIGKLL VSKEW
Subjt: TGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEW
Query: VRKIEKKAMTKLKNEETVRNLSHYLD
+RKIE++AM KL+++ +L +YL+
Subjt: VRKIEKKAMTKLKNEETVRNLSHYLD
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| P26683 RNA polymerase sigma factor SigA | 7.6e-42 | 29.92 | Show/hide |
Query: DLSDLPIEDGGDHDVNQKNDGQNDDIIVYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFR--NLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKV
+L DL IE+ D D+ +DG D+ + +S K A T++ K+ + ++ ++ ++ G + RL+ A E E++ +
Subjt: DLSDLPIEDGGDHDVNQKNDGQNDDIIVYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFR--NLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKV
Query: VANLERIRETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTY
+ LER+RE L ++ R S WA+A + + + +L G +D++++S LV+ +AKKY GL +DL+Q G+LG+++ +FD ++G++FSTY
Subjt: VANLERIRETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTY
Query: IQYWIRKSMSRVVARNSRGIQIPWSLTKVINQIQKARKALNNG-SRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQS
+WIR++++R +A SR I++P L + I++I+K K L+ R+ ++++IA + + K+R + ++ S++ + + + +F ++ ++
Subjt: IQYWIRKSMSRVVARNSRGIQIPWSLTKVINQIQKARKALNNG-SRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQS
Query: PEETVKRKLMKKDIFNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYL
PE+ V + L+++D+ +L+ L RER VL LRYGL D + K+LEEIG++ +V++E +R+IE KA+ KL++ L Y+
Subjt: PEETVKRKLMKKDIFNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYL
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| P38023 RNA polymerase sigma factor SigA1 | 2.6e-42 | 31.78 | Show/hide |
Query: AMDNADKVASQPLATRAAKEKFR------NLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWADAAGVDIKDLQKQ
A+D+ D V A AK K R ++ ++ ++ G + RL+ A E E++ + + LERIR+ L ++ R+ S + WA A + + +++
Subjt: AMDNADKVASQPLATRAAKEKFR------NLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWADAAGVDIKDLQKQ
Query: LQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKVINQIQKARK
L G +D++++S LV+ +AKKY GL +DL+Q G+LG+++ +FD ++G++FSTY +WIR++++R +A SR I++P L + I++I+K K
Subjt: LQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKVINQIQKARK
Query: ALNNG-SRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLVLRYGLMDF
L+ R+ ++++IA + + K+R + ++ S++ + + + +F + ++PE+ V + L+++D+ +L L RER VL LRYGL D
Subjt: ALNNG-SRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLVLRYGLMDF
Query: QPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYL
+ K+LEEIG+L +V++E +R+IE KA+ KL++ L Y+
Subjt: QPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYL
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| Q9LD95 RNA polymerase sigma factor sigF, chloroplastic | 1.4e-40 | 29.2 | Show/hide |
Query: IVYSGKRAGRRSVKKRA--MDNADKVASQPLATRAAKEKFRN-------LAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIA
IV S ++ RR+ +RA ++ D P T +AK+K++ L +F ++L+ A+ EAE+ + ++ + LE+++ LE ++G
Subjt: IVYSGKRAGRRSVKKRA--MDNADKVASQPLATRAAKEKFRN-------LAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIA
Query: SMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
++ WA+A G+ L+ + G +++L+ + LV+ +AK+Y+ GL +DL+Q G++G+++ V +F P+ G RF+TY +WIR+S+ + + +NSR
Subjt: SMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
Query: IQIPWSLTKVINQIQKARK-ALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLE
I++P ++ ++ ++ +ARK + G+ R S +++A G+ K+ + S+ Q + + + E T D+ I++P +V ++LM+ + NLL
Subjt: IQIPWSLTKVINQIQKARK-ALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLE
Query: GLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD
L +ER+++ LR+G+ + +SL EIG++ +SKE VR++E +A+ +LK L Y D
Subjt: GLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G08540.1 RNApolymerase sigma subunit 2 | 7.0e-51 | 30.96 | Show/hide |
Query: TLKTSSFHDLSDLPIEDGGDHDVNQKNDGQNDDIIVYSGKRAGRRSVKKRAMDN------ADKVASQPLATR-AAKEKFRNLAIFSRKRGSNSRKRRLIV
T S+ + DL E +V + + + V S ++ R++ + + ++ + K S P R A+E N + + ++S K L+
Subjt: TLKTSSFHDLSDLPIEDGGDHDVNQKNDGQNDDIIVYSGKRAGRRSVKKRAMDN------ADKVASQPLATR-AAKEKFRNLAIFSRKRGSNSRKRRLIV
Query: AQNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVG
+ E E+S G++ + LER++ L + SGR + + WA AAGVD K L++++ G C+D++++S LV+ +AK Y+ +G+ ++DLVQ G G+++G
Subjt: AQNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVG
Query: RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKVINQIQKARKALNNGSRRY-SDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNM
+FD +GF+FSTY +WI++++ + ++ SR I++P+ + + ++++ARK L + + ++ +++IA+ATGL + ++ K S+DQK+ N+
Subjt: RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKVINQIQKARKALNNGSRRY-SDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNM
Query: KYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYL
K E AD + E+ + ++ M++D+ +L+ L +RE+QV+ R+G+ D + K+L+EIG+++ VS+E VR+IE A KLKN++ +L YL
Subjt: KYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYL
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| AT1G64860.1 sigma factor A | 1.6e-26 | 29.76 | Show/hide |
Query: MSTGVKVVANLERIRETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKR
+S +K L+ + L+ G S A + + +LQ L +++L S LV+ +A++Y G M DLVQ G +G+L+G+ +FD +
Subjt: MSTGVKVVANLERIRETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKR
Query: GFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKVINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLN----MKYM
GFR STY+ +WIR+ +SR + NSR +++P L + + I+ A+ L S D IA++ + KVR A+ + V S+D+ LN +
Subjt: GFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKVINQIQKARKALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLN----MKYM
Query: EFTADTSIQ-SPEETVKRKLMKKDIFNLLEG-LESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNL
+ ADT ++ +P +K+++ L+ L RE++++ L YGL D + + E+I K + +S+E VR++ A+ KLK+ R +
Subjt: EFTADTSIQ-SPEETVKRKLMKKDIFNLLEG-LESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNL
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| AT2G36990.1 RNApolymerase sigma-subunit F | 1.0e-41 | 29.2 | Show/hide |
Query: IVYSGKRAGRRSVKKRA--MDNADKVASQPLATRAAKEKFRN-------LAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIA
IV S ++ RR+ +RA ++ D P T +AK+K++ L +F ++L+ A+ EAE+ + ++ + LE+++ LE ++G
Subjt: IVYSGKRAGRRSVKKRA--MDNADKVASQPLATRAAKEKFRN-------LAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIA
Query: SMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
++ WA+A G+ L+ + G +++L+ + LV+ +AK+Y+ GL +DL+Q G++G+++ V +F P+ G RF+TY +WIR+S+ + + +NSR
Subjt: SMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
Query: IQIPWSLTKVINQIQKARK-ALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLE
I++P ++ ++ ++ +ARK + G+ R S +++A G+ K+ + S+ Q + + + E T D+ I++P +V ++LM+ + NLL
Subjt: IQIPWSLTKVINQIQKARK-ALNNGSRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLE
Query: GLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD
L +ER+++ LR+G+ + +SL EIG++ +SKE VR++E +A+ +LK L Y D
Subjt: GLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHYLD
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| AT3G53920.1 RNApolymerase sigma-subunit C | 2.5e-117 | 46.01 | Show/hide |
Query: RLSFFSSICEEGESIYRETLKTCTCLSEAPQTSTDDL-LDLEEREINSRAKSLSHLHYGIKNTGPSKVEDNFSSCTGLPTGKASPFGVLMENLDVLEETF
R SF SS+ EE ++LK C C S +P T+ +++ ++L++ + +N G E ++SS + L + +L +NL LEETF
Subjt: RLSFFSSICEEGESIYRETLKTCTCLSEAPQTSTDDL-LDLEEREINSRAKSLSHLHYGIKNTGPSKVEDNFSSCTGLPTGKASPFGVLMENLDVLEETF
Query: AESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGGDHDVNQKNDGQNDDIIVYSGKRAGRRSVKKRA------MDNADKVASQPL
+ +ERDI+LQ+ KLGA E F TCLSR +S LSD + N + V S RR VKK+A +N D+ +S P+
Subjt: AESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPIEDGGDHDVNQKNDGQNDDIIVYSGKRAGRRSVKKRA------MDNADKVASQPL
Query: ATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLV
R + N+ + +R RK+R +++NE EMSTGVK+VA++ERIR LE+ESG++AS+SCWA AAG++ K L + L +GW+C+DEL++ST SLV
Subjt: ATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLV
Query: LFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKVINQIQKARKAL--NNGSRRYSDDDIAKA
LFLA+ YR G+ EDL+QAG +GVLQG RFD RG++FSTY+QYWIRKSMS +V+R++RG+ IP S+ + IN IQKARK L ++G + +D++IAK
Subjt: LFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKVINQIQKARKAL--NNGSRRYSDDDIAKA
Query: TGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEW
TG + K+R A+ CLKVVGS+D+K+ D K++EFT DT+++SPEE V R+ ++DI +LLEGLE RE+QV+VLRYGL D++PKSLEEIGKLL VSKEW
Subjt: TGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEW
Query: VRKIEKKAMTKLKNEETVRNLSHYLD
+RKIE++AM KL+++ +L +YL+
Subjt: VRKIEKKAMTKLKNEETVRNLSHYLD
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| AT5G13730.1 sigma factor 4 | 5.1e-33 | 29.91 | Show/hide |
Query: VYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWADAAG
+ S KR RR ++ + + + A E + + + G SR E ++ +K A LE + ++E E+ ++ + A G
Subjt: VYSGKRAGRRSVKKRAMDNADKVASQPLATRAAKEKFRNLAIFSRKRGSNSRKRRLIVAQNEAEMSTGVKVVANLERIRETLEKESGRIASMSCWADAAG
Query: VDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKV
+ + L ++++ R LV+ +A Y+ GL ++DL+Q G++G+L+G RFDP RG++ STY+ +WI++++ R +A SR +++P S+ ++
Subjt: VDIKDLQKQLQFGWFCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGALGVLQGVGRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKV
Query: INQIQKARKALNNGSRRY-SDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVL
++ +A L RR S ++IA+ L ++ VR+A + S+D+ M E PEE VKR+ MK +I LL L +RE +VL
Subjt: INQIQKARKALNNGSRRY-SDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMDDGLNMKYMEFTADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVL
Query: VLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHY
L +GL P S EEIGK L +S+E VR+I A+ KL+N V +L Y
Subjt: VLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEETVRNLSHY
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