; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0009334 (gene) of Snake gourd v1 genome

Gene IDTan0009334
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionMediator of RNA polymerase II transcription subunit 2-like
Genome locationLG10:2053712..2055894
RNA-Seq ExpressionTan0009334
SyntenyTan0009334
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048973.1 mediator of RNA polymerase II transcription subunit 2-like [Cucumis melo var. makuwa]2.6e-2590.12Show/hide
Query:  MSKKNNLSRRKKQHEFDLQREKEEKEKATKKLQAKKNKMKVDGTGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
        MSKKN+LSRRKKQ+EFDLQREK+EKEKA KKLQAKKN MKVDG+GKKKKGGGGFQVGKKKVKTKLTAAAKAKA+QAM+LDK
Subjt:  MSKKNNLSRRKKQHEFDLQREKEEKEKATKKLQAKKNKMKVDGTGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
KGN56523.1 hypothetical protein Csa_010072 [Cucumis sativus]3.4e-2590.12Show/hide
Query:  MSKKNNLSRRKKQHEFDLQREKEEKEKATKKLQAKKNKMKVDGTGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
        MSKKN+LSRRKKQ+EFDLQREK+EKEKA KKLQAKKN MKVDG+GKKKKGGGGFQVGKKKVKTKLTA AKAKA+QAMELDK
Subjt:  MSKKNNLSRRKKQHEFDLQREKEEKEKATKKLQAKKNKMKVDGTGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
XP_022147302.1 uncharacterized protein LOC111016287 [Momordica charantia]1.2e-2590.12Show/hide
Query:  MSKKNNLSRRKKQHEFDLQREKEEKEKATKKLQAKKNKMKVDGTGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
        MSKKNNLSRRKKQHEFDL+REK+E+EKA KKLQAKKN+MKVDG+GK+KKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELD+
Subjt:  MSKKNNLSRRKKQHEFDLQREKEEKEKATKKLQAKKNKMKVDGTGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
XP_022941890.1 uncharacterized protein LOC111447114 [Cucurbita moschata]4.0e-2692.59Show/hide
Query:  MSKKNNLSRRKKQHEFDLQREKEEKEKATKKLQAKKNKMKVDGTGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
        MSKKNNLSRRK QHEFDL+REK+EKEKA KKLQAKKNKMKVDG+GKKKKGG GFQVGKKKVKTKLTAAAKAKAAQAMELDK
Subjt:  MSKKNNLSRRKKQHEFDLQREKEEKEKATKKLQAKKNKMKVDGTGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
XP_030457135.1 uncharacterized protein LOC115678006 [Syzygium oleosum]8.4e-2487.65Show/hide
Query:  MSKKNNLSRRKKQHEFDLQREKEEKEKATKKLQAKKNKMKVDGTGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
        MSKKN+LSRRKKQ+EFDL+REK EKEKA KKLQAKKNKMKVDG+GKKKKG GGFQVGK+K+KTKLTA AKAKAAQAMELDK
Subjt:  MSKKNNLSRRKKQHEFDLQREKEEKEKATKKLQAKKNKMKVDGTGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
TrEMBL top hitse value%identityAlignment
A0A0A0L493 Uncharacterized protein1.7e-2590.12Show/hide
Query:  MSKKNNLSRRKKQHEFDLQREKEEKEKATKKLQAKKNKMKVDGTGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
        MSKKN+LSRRKKQ+EFDLQREK+EKEKA KKLQAKKN MKVDG+GKKKKGGGGFQVGKKKVKTKLTA AKAKA+QAMELDK
Subjt:  MSKKNNLSRRKKQHEFDLQREKEEKEKATKKLQAKKNKMKVDGTGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
A0A5A7TZC8 Mediator of RNA polymerase II transcription subunit 2-like1.3e-2590.12Show/hide
Query:  MSKKNNLSRRKKQHEFDLQREKEEKEKATKKLQAKKNKMKVDGTGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
        MSKKN+LSRRKKQ+EFDLQREK+EKEKA KKLQAKKN MKVDG+GKKKKGGGGFQVGKKKVKTKLTAAAKAKA+QAM+LDK
Subjt:  MSKKNNLSRRKKQHEFDLQREKEEKEKATKKLQAKKNKMKVDGTGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
A0A6J1D208 uncharacterized protein LOC1110162875.7e-2690.12Show/hide
Query:  MSKKNNLSRRKKQHEFDLQREKEEKEKATKKLQAKKNKMKVDGTGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
        MSKKNNLSRRKKQHEFDL+REK+E+EKA KKLQAKKN+MKVDG+GK+KKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELD+
Subjt:  MSKKNNLSRRKKQHEFDLQREKEEKEKATKKLQAKKNKMKVDGTGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
A0A6J1FV29 uncharacterized protein LOC1114471142.0e-2692.59Show/hide
Query:  MSKKNNLSRRKKQHEFDLQREKEEKEKATKKLQAKKNKMKVDGTGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
        MSKKNNLSRRK QHEFDL+REK+EKEKA KKLQAKKNKMKVDG+GKKKKGG GFQVGKKKVKTKLTAAAKAKAAQAMELDK
Subjt:  MSKKNNLSRRKKQHEFDLQREKEEKEKATKKLQAKKNKMKVDGTGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
A0A6J1IED7 uncharacterized protein LOC1114732882.0e-2692.59Show/hide
Query:  MSKKNNLSRRKKQHEFDLQREKEEKEKATKKLQAKKNKMKVDGTGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
        MSKKNNLSRRK QHEFDL+REK+EKEKA KKLQAKKNKMKVDG+GKKKKGG GFQVGKKKVKTKLTAAAKAKAAQAMELDK
Subjt:  MSKKNNLSRRKKQHEFDLQREKEEKEKATKKLQAKKNKMKVDGTGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G45860.1 unknown protein1.9e-2176.25Show/hide
Query:  MSKKNNLSRRKKQHEFDLQREKEEKEKATKKLQAKKNKMKVDGTGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELD
        MSKKNNL++RKKQHE++LQ+EKE ++K  KKL A KNKMKVDG+GKKKK  GGF VGKKK+KTKLT  AKAKAAQAMELD
Subjt:  MSKKNNLSRRKKQHEFDLQREKEEKEKATKKLQAKKNKMKVDGTGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAAGAAGAATAATCTTTCGCGCAGGAAGAAGCAACACGAATTCGACCTTCAAAGGGAGAAAGAAGAAAAAGAAAAAGCCACGAAGAAGCTCCAAGCAAAGAAGAA
TAAGATGAAGGTTGATGGTACTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAGCGGCAAAAGCAAAGGCCG
CCCAAGCAATGGAGCTTGATAAATGA
mRNA sequenceShow/hide mRNA sequence
ACCCGGTTTACTATAAGGGTACCCAGGAGAGCTTCTAAGTAAATTTCGGGTTAGGGTTTAGGAAAACGGTGACCAGCGGCAAATCAGCTAGACAATTTCTGGCGGCAGGG
GCCAGCAAAATGTCGAAGAAGAATAATCTTTCGCGCAGGAAGAAGCAACACGAATTCGACCTTCAAAGGGAGAAAGAAGAAAAAGAAAAAGCCACGAAGAAGCTCCAAGC
AAAGAAGAATAAGATGAAGGTTGATGGTACTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAGCGGCAAAAG
CAAAGGCCGCCCAAGCAATGGAGCTTGATAAATGAGGGTGGCAATGGCAGGATCTTCGGGGGGGTTCCCATTAGCCATTCGACTGACAGAAAACCTAGTGAAATGCATTG
CAGTATTTGCACTCAAGTAATTTATTATGGAAGCCATTGAAATTATGATGCATTGATTATGCTCTAAGAGCAAGATATGTTTTATAGGTTGTACAACTTTGTCCTTGAAT
TCTAAAAATTATGATGCATTTGAGTGATCAGAAAAATTGTAGTATGATTTATGAGTCCTAGTATAAACATCTACTTGATATTTATGGTTTATGTTGGCTCTTGTTTTGTT
TTTTCTTTTTAGAGTTCAACAACACGTAGGGTGGAAGATTCGAACTTAGATCTCTTAGTCGTGGATATATGCCTCAAGCAATTAAGTTATTCTTAGGTTGGCTTGGGCTC
TGTGCTTGTCACCCTGTCTTGAGTTTGAGATGAGTTTGATTTTCAAATTTATTGATTCGTCACCAAATCTCTAATTTATTG
Protein sequenceShow/hide protein sequence
MSKKNNLSRRKKQHEFDLQREKEEKEKATKKLQAKKNKMKVDGTGKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK