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Tan0009357 (gene) of Snake gourd v1 genome

Gene IDTan0009357
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG11:57066567..57066878
RNA-Seq ExpressionTan0009357
SyntenyTan0009357
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.0e-2158.25Show/hide
Query:  MARGGKRGR-QVETGTHLATGDRGREVSEGESSHPQQEVNMEERIFTRITQRLVESVGSAQVDPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKC
        M RG  R     +T         G   S+ ESS P  E NMEE++  R+ QRL+  + SAQ DPEKKYGIERLKALGATTF GTT+PADAE WL LIEKC
Subjt:  MARGGKRGR-QVETGTHLATGDRGREVSEGESSHPQQEVNMEERIFTRITQRLVESVGSAQVDPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKC

Query:  FRV
        FRV
Subjt:  FRV

KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.2e-2065Show/hide
Query:  GREVSEGESSHPQQEVNMEERIFTRITQRLVESVGSAQVDPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRV
        G   S+ ESS P+ E N+EE++  R+ QRLV  + SAQ DPEKKYG ERLKALGATTF GTT+P D E WL LIEKCFRV
Subjt:  GREVSEGESSHPQQEVNMEERIFTRITQRLVESVGSAQVDPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRV

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]3.2e-2065Show/hide
Query:  GREVSEGESSHPQQEVNMEERIFTRITQRLVESVGSAQVDPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRV
        G   S+ ESS P+ E N+EE++  R+ QRLV  + SAQ DPEKKYG ERLKALGATTF GTT+P D E WL LIEKCFRV
Subjt:  GREVSEGESSHPQQEVNMEERIFTRITQRLVESVGSAQVDPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRV

XP_038882393.1 uncharacterized protein LOC120073661 [Benincasa hispida]3.6e-1962.5Show/hide
Query:  VSEGESSHPQ--QEVNMEERIFTRITQRLVESVGSAQVDPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRVM
        +SEGES  PQ   +  +E+ +F +I QRLV S+GSA+ D EKKYGIER KALGA TFEGTTDPA+ E+WL+++EKCF VM
Subjt:  VSEGESSHPQ--QEVNMEERIFTRITQRLVESVGSAQVDPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRVM

XP_038896416.1 uncharacterized protein LOC120084680 [Benincasa hispida]5.0e-2179.69Show/hide
Query:  MEERIFTRITQRLVESVGSAQVDPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRVM
        ME+R+F RITQRL  SVGS Q DPEKK+GIERLKALGATTF+GTTDP DAE+WL LIEKCF+VM
Subjt:  MEERIFTRITQRLVESVGSAQVDPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRVM

TrEMBL top hitse value%identityAlignment
A0A5A7SJ99 DNA/RNA polymerases superfamily protein1.9e-1862.5Show/hide
Query:  GREVSEGESSHPQQEVNMEERIFTRITQRLVESVGSAQVDPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRV
        G   S+ ESS P  E N+EE++  R+ QRL+  +  AQ D EKKYGIERLKALGATTF GTT+P DAE WL LIEKCF+V
Subjt:  GREVSEGESSHPQQEVNMEERIFTRITQRLVESVGSAQVDPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRV

A0A5A7SKG0 Uncharacterized protein2.5e-1858.7Show/hide
Query:  ETGTHLATGDRGREVSEGESSHPQQEVNMEERIFTRITQRLVESVGSAQVDPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRVM
        E GT  AT    RE + G+S+H   + NMEERIF +I QRL + V  AQ D EKKYGIER+KALGAT F+GT D  + E WL LIEKCF VM
Subjt:  ETGTHLATGDRGREVSEGESSHPQQEVNMEERIFTRITQRLVESVGSAQVDPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRVM

A0A5A7T1M0 Reverse transcriptase1.6e-2065Show/hide
Query:  GREVSEGESSHPQQEVNMEERIFTRITQRLVESVGSAQVDPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRV
        G   S+ ESS P+ E N+EE++  R+ QRLV  + SAQ DPEKKYG ERLKALGATTF GTT+P D E WL LIEKCFRV
Subjt:  GREVSEGESSHPQQEVNMEERIFTRITQRLVESVGSAQVDPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRV

A0A5D3BB91 Reverse transcriptase1.6e-2065Show/hide
Query:  GREVSEGESSHPQQEVNMEERIFTRITQRLVESVGSAQVDPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRV
        G   S+ ESS P+ E N+EE++  R+ QRLV  + SAQ DPEKKYG ERLKALGATTF GTT+P D E WL LIEKCFRV
Subjt:  GREVSEGESSHPQQEVNMEERIFTRITQRLVESVGSAQVDPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRV

A0A5D3DES5 DNA/RNA polymerases superfamily protein2.4e-2158.25Show/hide
Query:  MARGGKRGR-QVETGTHLATGDRGREVSEGESSHPQQEVNMEERIFTRITQRLVESVGSAQVDPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKC
        M RG  R     +T         G   S+ ESS P  E NMEE++  R+ QRL+  + SAQ DPEKKYGIERLKALGATTF GTT+PADAE WL LIEKC
Subjt:  MARGGKRGR-QVETGTHLATGDRGREVSEGESSHPQQEVNMEERIFTRITQRLVESVGSAQVDPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKC

Query:  FRV
        FRV
Subjt:  FRV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGAGGTGGCAAACGAGGTAGGCAAGTGGAGACTGGAACTCATTTAGCAACTGGTGATAGAGGAAGAGAGGTATCAGAGGGAGAGTCTAGTCATCCTCAGCAAGA
GGTGAATATGGAGGAACGAATCTTTACGAGGATAACTCAAAGATTAGTTGAAAGTGTTGGATCAGCACAAGTAGATCCAGAAAAGAAGTATGGCATTGAAAGACTGAAAG
CCTTAGGTGCAACAACATTTGAAGGCACGACAGATCCCGCTGATGCTGAGGTTTGGTTAAATCTGATTGAGAAGTGCTTTAGGGTCATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGAGGTGGCAAACGAGGTAGGCAAGTGGAGACTGGAACTCATTTAGCAACTGGTGATAGAGGAAGAGAGGTATCAGAGGGAGAGTCTAGTCATCCTCAGCAAGA
GGTGAATATGGAGGAACGAATCTTTACGAGGATAACTCAAAGATTAGTTGAAAGTGTTGGATCAGCACAAGTAGATCCAGAAAAGAAGTATGGCATTGAAAGACTGAAAG
CCTTAGGTGCAACAACATTTGAAGGCACGACAGATCCCGCTGATGCTGAGGTTTGGTTAAATCTGATTGAGAAGTGCTTTAGGGTCATGTGA
Protein sequenceShow/hide protein sequence
MARGGKRGRQVETGTHLATGDRGREVSEGESSHPQQEVNMEERIFTRITQRLVESVGSAQVDPEKKYGIERLKALGATTFEGTTDPADAEVWLNLIEKCFRVM