CuGenDBv2

Gene ID	Tan0009382
Organism	Trichosanthes anguina (Snake gourd v1)
Description	binding partner of ACD11 1-like
Genome location	LG04:19009999..19012700
RNA-Seq Expression	Tan0009382
Synteny	Tan0009382
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004142266.1 binding partner of ACD11 1 [Cucumis sativus]

4.6e-138

96.76

Show/hide

Query:  MSMRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIA
        MSMRTVKVSN+SK TSERDIKEFFSFSGEILYVEMQRE+ENTQVA+VTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPP+AMSSILDKRQTVTGIA
Subjt:  MSMRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIA

Query:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMS
        PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQV EKTKSALAVAEQKA+SAGTALMS
Subjt:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMS

Query:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        NYYVLTGAAWFSNAVTAVTKAAEEVTQMTK KVEKAEEEKKESIYRERTGII+NFAELHLDEPLPGEPAIVPVNSADR
Subjt:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

XP_008452423.1 PREDICTED: binding partner of ACD11 1-like isoform X1 [Cucumis melo]

7.9e-138

96.4

Show/hide

Query:  MSMRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIA
        MSMRTVKVSN+SK TSERDIKEFFSFSGEILYVEMQRE+ENTQVA+VTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPP+AMSSILDKRQTVTGIA
Subjt:  MSMRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIA

Query:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMS
        PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQ TSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQV+EKTKSALAVAEQKA+SAGTALMS
Subjt:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMS

Query:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        NYYVLTGAAWFSNAVTAVTKAAEEVTQMTK KVEKAEEEKKESIYRERTGII+NFAELHLDEPLPGEPAIVPVNSADR
Subjt:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

XP_008452424.1 PREDICTED: binding partner of ACD11 1-like isoform X2 [Cucumis melo]

8.7e-137

96.38

Show/hide

Query:  MRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIAPN
        MRTVKVSN+SK TSERDIKEFFSFSGEILYVEMQRE+ENTQVA+VTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPP+AMSSILDKRQTVTGIAPN
Subjt:  MRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIAPN

Query:  QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMSNY
        QAEDVVSTMLAKGFILGKDALNKAKAFDERLQ TSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQV+EKTKSALAVAEQKA+SAGTALMSNY
Subjt:  QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMSNY

Query:  YVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        YVLTGAAWFSNAVTAVTKAAEEVTQMTK KVEKAEEEKKESIYRERTGII+NFAELHLDEPLPGEPAIVPVNSADR
Subjt:  YVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

XP_022941588.1 binding partner of ACD11 1-like isoform X3 [Cucurbita moschata]

1.9e-136

96.04

Show/hide

Query:  MSMRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIA
        MSMRTVKVSN+SKATSERDI+EFFSFSGEILYVEMQRETENTQVA+VTYKDSQGADTAILLTGAKIGDLSVTI LVENYHLPP+AMSSILDKRQTVTG A
Subjt:  MSMRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIA

Query:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMS
        PNQAEDVVSTMLAKGFILGKDA+NKAKAFDER QLTSNASATV SIDRKMGITEKITAGTAVVNEKVREMDE FQVSEKTKSALAVAEQKASSAGTALMS
Subjt:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMS

Query:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        NYYV TGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
Subjt:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

XP_038891484.1 binding partner of ACD11 1 [Benincasa hispida]

2.1e-138

96.76

Show/hide

Query:  MSMRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIA
        MSMRTVKVSN+SK TSERDIKEFFSFSGEILYVEMQRETENTQVA+VTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPP+AMSSILDK+QTV GIA
Subjt:  MSMRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIA

Query:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMS
        PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQV+EKTKSALAVAEQKA+SAGTALMS
Subjt:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMS

Query:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        NYYVLTGAAWFSNAVTAVTKAAEEVTQMTK KVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
Subjt:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KIR7 RRM domain-containing protein

2.2e-138

96.76

Show/hide

Query:  MSMRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIA
        MSMRTVKVSN+SK TSERDIKEFFSFSGEILYVEMQRE+ENTQVA+VTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPP+AMSSILDKRQTVTGIA
Subjt:  MSMRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIA

Query:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMS
        PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQV EKTKSALAVAEQKA+SAGTALMS
Subjt:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMS

Query:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        NYYVLTGAAWFSNAVTAVTKAAEEVTQMTK KVEKAEEEKKESIYRERTGII+NFAELHLDEPLPGEPAIVPVNSADR
Subjt:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

A0A1S3BT66 binding partner of ACD11 1-like isoform X2

4.2e-137

96.38

Show/hide

Query:  MRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIAPN
        MRTVKVSN+SK TSERDIKEFFSFSGEILYVEMQRE+ENTQVA+VTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPP+AMSSILDKRQTVTGIAPN
Subjt:  MRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIAPN

Query:  QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMSNY
        QAEDVVSTMLAKGFILGKDALNKAKAFDERLQ TSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQV+EKTKSALAVAEQKA+SAGTALMSNY
Subjt:  QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMSNY

Query:  YVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        YVLTGAAWFSNAVTAVTKAAEEVTQMTK KVEKAEEEKKESIYRERTGII+NFAELHLDEPLPGEPAIVPVNSADR
Subjt:  YVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

A0A1S3BUX7 binding partner of ACD11 1-like isoform X1

3.8e-138

96.4

Show/hide

Query:  MSMRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIA
        MSMRTVKVSN+SK TSERDIKEFFSFSGEILYVEMQRE+ENTQVA+VTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPP+AMSSILDKRQTVTGIA
Subjt:  MSMRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIA

Query:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMS
        PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQ TSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQV+EKTKSALAVAEQKA+SAGTALMS
Subjt:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMS

Query:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        NYYVLTGAAWFSNAVTAVTKAAEEVTQMTK KVEKAEEEKKESIYRERTGII+NFAELHLDEPLPGEPAIVPVNSADR
Subjt:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

A0A5A7UTK1 Binding partner of ACD11 1-like isoform X1

4.2e-137

96.38

Show/hide

Query:  MRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIAPN
        MRTVKVSN+SK TSERDIKEFFSFSGEILYVEMQRE+ENTQVA+VTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPP+AMSSILDKRQTVTGIAPN
Subjt:  MRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIAPN

Query:  QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMSNY
        QAEDVVSTMLAKGFILGKDALNKAKAFDERLQ TSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQV+EKTKSALAVAEQKA+SAGTALMSNY
Subjt:  QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMSNY

Query:  YVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        YVLTGAAWFSNAVTAVTKAAEEVTQMTK KVEKAEEEKKESIYRERTGII+NFAELHLDEPLPGEPAIVPVNSADR
Subjt:  YVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

A0A6J1FSI4 binding partner of ACD11 1-like isoform X3

9.4e-137

96.04

Show/hide

Query:  MSMRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIA
        MSMRTVKVSN+SKATSERDI+EFFSFSGEILYVEMQRETENTQVA+VTYKDSQGADTAILLTGAKIGDLSVTI LVENYHLPP+AMSSILDKRQTVTG A
Subjt:  MSMRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIA

Query:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMS
        PNQAEDVVSTMLAKGFILGKDA+NKAKAFDER QLTSNASATV SIDRKMGITEKITAGTAVVNEKVREMDE FQVSEKTKSALAVAEQKASSAGTALMS
Subjt:  PNQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMS

Query:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
        NYYV TGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR
Subjt:  NYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

SwissProt top hits

e value

%identity

Alignment

P87216 Protein vip1

5.7e-06

26.57

Show/hide

Query:  VKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIAPNQAE
        V V+N+S   +E+ I +FFSF G++  +  ++  E TQ A + ++      TA+LL  A +G   + IT  +         +S  D+       A  Q +
Subjt:  VKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIAPNQAE

Query:  D----VVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVN------EKVREMDEMFQVSEK---TKSALAVAEQKA-
             ++S +L++G+ L    L K+   D+   ++S          +  GI E   +G   VN      EK  E+D  F +S+K   T S ++    KA 
Subjt:  D----VVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVN------EKVREMDEMFQVSEK---TKSALAVAEQKA-

Query:  -SSAGTA
         ++AGT+
Subjt:  -SSAGTA

Q9LFD5 Binding partner of ACD11 1

1.7e-55

49.23

Show/hide

Query:  MRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIAPN
        +R+VKV N+S   +E DIKEFFSFSGE+  +++Q    N   A+VT+K++QGA+TA+LL+GA I D SV I L  NY  PP A  +  + + +       
Subjt:  MRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIAPN

Query:  QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMSNY
        +AEDVVS+MLAKGFILGKDA+ KAKAFDE+   TS A+A VAS+D+K+G+++K+TAGT++VNEK++ +D+ FQV+E+TKS  A AEQ  SSAG+A+M N 
Subjt:  QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMSNY

Query:  YVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDE
        YVLTG +W + A   V +AA EV Q TK   EK E E+     + +  +   ++ +H  E
Subjt:  YVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDE

Arabidopsis top hits

e value

%identity

Alignment

AT1G67950.1 RNA-binding (RRM/RBD/RNP motifs) family protein

4.9e-69

55.35

Show/hide

Query:  MRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIAPN
        ++TVK+SNVS   S++D+KEFFSFSG+I YVEM+ ET+ +QVA+VT+KDSQGA+TA+LLTGA I DL V+IT   NY LPP+A++  LD   +  G +  
Subjt:  MRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIAPN

Query:  QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMSNY
        +AEDVV+ M+ +G+ LGKDA+ KAKAFD+R  L SNASAT+AS+D KMG++EK++ GT VVNEK+R++DE +QV E TKSALA AE+ A SA TALM+N 
Subjt:  QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMSNY

Query:  YVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPV
        YV +GA+WFSNA  AVTKA +E       KVE   E +KE I               LD   P  PA+VPV
Subjt:  YVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPV

AT1G67950.2 RNA-binding (RRM/RBD/RNP motifs) family protein

4.9e-69

55.35

Show/hide

Query:  MRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIAPN
        ++TVK+SNVS   S++D+KEFFSFSG+I YVEM+ ET+ +QVA+VT+KDSQGA+TA+LLTGA I DL V+IT   NY LPP+A++  LD   +  G +  
Subjt:  MRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIAPN

Query:  QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMSNY
        +AEDVV+ M+ +G+ LGKDA+ KAKAFD+R  L SNASAT+AS+D KMG++EK++ GT VVNEK+R++DE +QV E TKSALA AE+ A SA TALM+N 
Subjt:  QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMSNY

Query:  YVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPV
        YV +GA+WFSNA  AVTKA +E       KVE   E +KE I               LD   P  PA+VPV
Subjt:  YVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPV

AT1G67950.3 RNA-binding (RRM/RBD/RNP motifs) family protein

5.4e-68

55.15

Show/hide

Query:  MRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQ-TVTGIAP
        ++TVK+SNVS   S++D+KEFFSFSG+I YVEM+ ET+ +QVA+VT+KDSQGA+TA+LLTGA I DL V+IT   NY LPP+A++  LD ++ +  G + 
Subjt:  MRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQ-TVTGIAP

Query:  NQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMSN
         +AEDVV+ M+ +G+ LGKDA+ KAKAFD+R  L SNASAT+AS+D KMG++EK++ GT VVNEK+R++DE +QV E TKSALA AE+ A SA TALM+N
Subjt:  NQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMSN

Query:  YYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPV
         YV +GA+WFSNA  AVTKA +E       KVE   E +KE I               LD   P  PA+VPV
Subjt:  YYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPV

AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein

5.2e-71

56.77

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Query:  MSMRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIA
        M+M TVKVSNVS   ++RD+KEFFSFSG+ILY+E Q ETE T++A+VT+KD QGA+TA+LL+GA I D SV +++  +Y L P+A++S+  K    +  A
Subjt:  MSMRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIA

Query:  PN----QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGT
         +    +AEDVVS+MLAKGFILGKDA+ KAK+ DE+ QLTS ASA VAS D+K+G T+KI  GT VV EKVRE+D+ +QVSEKTKSA+A AEQ  S+AG+
Subjt:  PN----QAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGT

Query:  ALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDE
        A+M N YVLTGA W + A   V KAAEEV Q  K KV  AEEE K         +++ FA +HL E
Subjt:  ALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDE

AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein

5.7e-70

54.44

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Query:  MSMRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIA
        MSM TVKVSNVS   +ERD+KEFFSFSG+I Y+E Q E + +++A+VT+KD QGA+TA+LLTG+ I D SVT+T+  +Y LPPDA++SI   +++    +
Subjt:  MSMRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIA

Query:  P--------NQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKAS
        P         +AEDVVS M++KGF+LGKDA+ KAK+ DE+ QLTS ASA V S D+++G TEKI  GT VV+EKV+E+D+ FQV+EKTKSA+A AEQ  S
Subjt:  P--------NQAEDVVSTMLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKAS

Query:  SAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDE
        +AG+A+M N YVLTGA W + A   V+KAAEEV Q  K KV  AEEE++     E+  +++  A +HL E
Subjt:  SAGTALMSNYYVLTGAAWFSNAVTAVTKAAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDE

Sequences

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CDS sequence

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ATGTCGATGAGAACTGTGAAGGTCAGCAATGTCTCAAAGGCTACTTCTGAGAGAGACATCAAAGAATTCTTTTCATTCTCTGGTGAAATCCTATATGTTGAAATGCAAAG
AGAAACTGAAAATACCCAGGTTGCTTTTGTTACATATAAGGATTCTCAAGGAGCAGACACTGCAATTCTTTTGACAGGAGCAAAAATTGGTGATCTATCTGTAACAATTA
CTCTGGTTGAGAATTACCATCTTCCACCTGATGCAATGTCTTCAATCCTGGATAAAAGGCAAACTGTTACTGGGATTGCTCCGAATCAGGCTGAAGATGTTGTAAGTACA
ATGCTTGCCAAGGGCTTCATCCTGGGAAAGGATGCTCTCAACAAGGCAAAAGCGTTCGACGAACGACTCCAATTGACATCGAATGCTTCTGCAACCGTTGCTTCCATAGA
CCGCAAGATGGGCATAACTGAGAAGATAACTGCAGGCACAGCAGTAGTAAATGAAAAGGTCAGGGAGATGGATGAAATGTTCCAGGTTTCCGAAAAGACGAAATCCGCCC
TTGCAGTTGCCGAACAGAAGGCAAGCAGTGCTGGAACCGCGCTTATGAGCAACTATTATGTGTTAACTGGAGCAGCATGGTTTTCAAATGCTGTAACTGCAGTTACAAAA
GCGGCCGAGGAAGTGACCCAAATGACCAAGGCAAAAGTCGAGAAAGCCGAGGAGGAGAAAAAGGAGAGCATATACCGTGAAAGAACTGGGATCATCAATAACTTCGCCGA
GCTCCATCTCGATGAGCCGTTACCGGGGGAGCCTGCTATTGTTCCAGTCAATTCAGCTGATAGATAG

mRNA sequence

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TTTGGATTAAAAAAAACAAAAGTTTTATCCAGTTGCGTCCAGTTATATACAGATCACAGAAGAGACATACGAAAGCAAGTCAAAAGTCAAATTGTCTCGCTACTACTGAA
AAACAAATATGAAACAGCTTTGCAAACAAACCGTATCCATTTCCAGAACCCAAAAAAAAAAAACCTCACAAGAATTTCTTCTCTTCTCTTCTCTCCGCCGCTCGATCTCA
TCATTTTCCGCCATAGCTAATTACCTCTCGAAGCTTTCTTTTACCTTTCAGAAATGTCGATGAGAACTGTGAAGGTCAGCAATGTCTCAAAGGCTACTTCTGAGAGAGAC
ATCAAAGAATTCTTTTCATTCTCTGGTGAAATCCTATATGTTGAAATGCAAAGAGAAACTGAAAATACCCAGGTTGCTTTTGTTACATATAAGGATTCTCAAGGAGCAGA
CACTGCAATTCTTTTGACAGGAGCAAAAATTGGTGATCTATCTGTAACAATTACTCTGGTTGAGAATTACCATCTTCCACCTGATGCAATGTCTTCAATCCTGGATAAAA
GGCAAACTGTTACTGGGATTGCTCCGAATCAGGCTGAAGATGTTGTAAGTACAATGCTTGCCAAGGGCTTCATCCTGGGAAAGGATGCTCTCAACAAGGCAAAAGCGTTC
GACGAACGACTCCAATTGACATCGAATGCTTCTGCAACCGTTGCTTCCATAGACCGCAAGATGGGCATAACTGAGAAGATAACTGCAGGCACAGCAGTAGTAAATGAAAA
GGTCAGGGAGATGGATGAAATGTTCCAGGTTTCCGAAAAGACGAAATCCGCCCTTGCAGTTGCCGAACAGAAGGCAAGCAGTGCTGGAACCGCGCTTATGAGCAACTATT
ATGTGTTAACTGGAGCAGCATGGTTTTCAAATGCTGTAACTGCAGTTACAAAAGCGGCCGAGGAAGTGACCCAAATGACCAAGGCAAAAGTCGAGAAAGCCGAGGAGGAG
AAAAAGGAGAGCATATACCGTGAAAGAACTGGGATCATCAATAACTTCGCCGAGCTCCATCTCGATGAGCCGTTACCGGGGGAGCCTGCTATTGTTCCAGTCAATTCAGC
TGATAGATAGACAGTAAGTTGTGAATCATATGCATGAAAACAGAAAACATACACTTGTGAATTACATTGCTTCCCCATCTTTGCTGTATGATATACATTTCATCTAGAGG
TGCTCCAATTACAGAGTTTACTTCTTTTTATACAGCTGTTTCTGTTGTGGATGTTGCAATGTTGTGACATTCTTTTGAGTAGAAAAAAAGATACTTTTTGAATA

Protein sequence

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MSMRTVKVSNVSKATSERDIKEFFSFSGEILYVEMQRETENTQVAFVTYKDSQGADTAILLTGAKIGDLSVTITLVENYHLPPDAMSSILDKRQTVTGIAPNQAEDVVST
MLAKGFILGKDALNKAKAFDERLQLTSNASATVASIDRKMGITEKITAGTAVVNEKVREMDEMFQVSEKTKSALAVAEQKASSAGTALMSNYYVLTGAAWFSNAVTAVTK
AAEEVTQMTKAKVEKAEEEKKESIYRERTGIINNFAELHLDEPLPGEPAIVPVNSADR

Tan0009382 (gene) of Snake gourd v1 genome