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Tan0009389 (gene) of Snake gourd v1 genome

Gene IDTan0009389
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptiontranscription factor UPBEAT1-like
Genome locationLG04:81372568..81372846
RNA-Seq ExpressionTan0009389
SyntenyTan0009389
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFZ04515.1 hypothetical protein Acr_17g0000870 [Actinidia rufa]7.4e-0855.17Show/hide
Query:  RSVKRVCSKRIRRLRKMIPKGESMELNGLFRETADYIVWLQLKVRMMQTLVHVLNGSD
        R  K V  K++R LRK++PK ESM L+GLFR+TA+YI+ LQ++V++MQ +V VL+GS+
Subjt:  RSVKRVCSKRIRRLRKMIPKGESMELNGLFRETADYIVWLQLKVRMMQTLVHVLNGSD
KAA0038125.1 basic helix-loop-helix protein [Cucumis melo var. makuwa]2.0e-2172.62Show/hide
Query:  DQVSNKRIAKQVERRQEKV---LRSRSVKRVCSKRIRRLRKMIPKGESMELNGLFRETADYIVWLQLKVRMMQTLVHVLNGSDE
        D VS++RIAKQV +++ ++   L   S KR+C KRIR+LRKMIPK ESMELNGLFRETADYIVWLQ+KVRMMQ LVHVLNGSDE
Subjt:  DQVSNKRIAKQVERRQEKV---LRSRSVKRVCSKRIRRLRKMIPKGESMELNGLFRETADYIVWLQLKVRMMQTLVHVLNGSDE
KAG6787023.1 hypothetical protein POTOM_008650 [Populus tomentosa]4.3e-0862.75Show/hide
Query:  KRIRRLRKMIPKGESMELNGLFRETADYIVWLQLKVRMMQTLVHVLNGSDE
        +R+R L+K+IP  ESM L+GLFRETADYI+ LQ++VR+MQ +V VL GSD+
Subjt:  KRIRRLRKMIPKGESMELNGLFRETADYIVWLQLKVRMMQTLVHVLNGSDE
KGN58133.1 hypothetical protein Csa_017541 [Cucumis sativus]1.2e-2175Show/hide
Query:  DQVSNKRIAKQV-ERRQEKVLRS--RSVKRVCSKRIRRLRKMIPKGESMELNGLFRETADYIVWLQLKVRMMQTLVHVLNGSDE
        D VS++RIAKQV +++ E V RS   S KR+C KRIRRL+KM+PK ESMELNGLFRETADYIVWLQ+KVRMMQ LVHVLNGSDE
Subjt:  DQVSNKRIAKQV-ERRQEKVLRS--RSVKRVCSKRIRRLRKMIPKGESMELNGLFRETADYIVWLQLKVRMMQTLVHVLNGSDE
XP_034911859.1 transcription factor UPBEAT1-like [Populus alba]4.3e-0862.75Show/hide
Query:  KRIRRLRKMIPKGESMELNGLFRETADYIVWLQLKVRMMQTLVHVLNGSDE
        +R+R L+K+IP  ESM L+GLFRETADYI+ LQ++VR+MQ +V VL GSD+
Subjt:  KRIRRLRKMIPKGESMELNGLFRETADYIVWLQLKVRMMQTLVHVLNGSDE
TrEMBL top hitse value%identityAlignment
A0A0A0L8J6 Uncharacterized protein5.7e-2275Show/hide
Query:  DQVSNKRIAKQV-ERRQEKVLRS--RSVKRVCSKRIRRLRKMIPKGESMELNGLFRETADYIVWLQLKVRMMQTLVHVLNGSDE
        D VS++RIAKQV +++ E V RS   S KR+C KRIRRL+KM+PK ESMELNGLFRETADYIVWLQ+KVRMMQ LVHVLNGSDE
Subjt:  DQVSNKRIAKQV-ERRQEKVLRS--RSVKRVCSKRIRRLRKMIPKGESMELNGLFRETADYIVWLQLKVRMMQTLVHVLNGSDE
A0A2R6QD52 Transcription factor like6.1e-0855.17Show/hide
Query:  RSVKRVCSKRIRRLRKMIPKGESMELNGLFRETADYIVWLQLKVRMMQTLVHVLNGSD
        R  K V  K++R LRK++PK ESM L+GLFR+TA+YI+ LQ++V++MQ +V VL+GS+
Subjt:  RSVKRVCSKRIRRLRKMIPKGESMELNGLFRETADYIVWLQLKVRMMQTLVHVLNGSD
A0A4V5ZXB7 Uncharacterized protein2.1e-0862.75Show/hide
Query:  KRIRRLRKMIPKGESMELNGLFRETADYIVWLQLKVRMMQTLVHVLNGSDE
        +R+R L+K+IP  ESM L+GLFRETADYI+ LQ++VR+MQ +V VL GSD+
Subjt:  KRIRRLRKMIPKGESMELNGLFRETADYIVWLQLKVRMMQTLVHVLNGSDE
A0A5A7T9M0 Basic helix-loop-helix protein9.7e-2272.62Show/hide
Query:  DQVSNKRIAKQVERRQEKV---LRSRSVKRVCSKRIRRLRKMIPKGESMELNGLFRETADYIVWLQLKVRMMQTLVHVLNGSDE
        D VS++RIAKQV +++ ++   L   S KR+C KRIR+LRKMIPK ESMELNGLFRETADYIVWLQ+KVRMMQ LVHVLNGSDE
Subjt:  DQVSNKRIAKQVERRQEKV---LRSRSVKRVCSKRIRRLRKMIPKGESMELNGLFRETADYIVWLQLKVRMMQTLVHVLNGSDE
A0A7J0G0Q9 Uncharacterized protein3.6e-0855.17Show/hide
Query:  RSVKRVCSKRIRRLRKMIPKGESMELNGLFRETADYIVWLQLKVRMMQTLVHVLNGSD
        R  K V  K++R LRK++PK ESM L+GLFR+TA+YI+ LQ++V++MQ +V VL+GS+
Subjt:  RSVKRVCSKRIRRLRKMIPKGESMELNGLFRETADYIVWLQLKVRMMQTLVHVLNGSD
SwissProt top hitse value%identityAlignment
O22901 Transcription factor UPBEAT19.4e-0641.43Show/hide
Query:  IAKQVERRQEKVLRSRSVKRVCSKRIRRLRKMIPKGESME-LNGLFRETADYIVWLQLKVRMMQTLVHVL
        + K + R ++ V  SR   R   +R++ L++++P  ++ E L+GLFR+TADYI+ L++KV++MQT+V VL
Subjt:  IAKQVERRQEKVLRSRSVKRVCSKRIRRLRKMIPKGESME-LNGLFRETADYIVWLQLKVRMMQTLVHVL
Arabidopsis top hitse value%identityAlignment
AT2G47270.1 sequence-specific DNA binding transcription factors;transcription regulators6.6e-0741.43Show/hide
Query:  IAKQVERRQEKVLRSRSVKRVCSKRIRRLRKMIPKGESME-LNGLFRETADYIVWLQLKVRMMQTLVHVL
        + K + R ++ V  SR   R   +R++ L++++P  ++ E L+GLFR+TADYI+ L++KV++MQT+V VL
Subjt:  IAKQVERRQEKVLRSRSVKRVCSKRIRRLRKMIPKGESME-LNGLFRETADYIVWLQLKVRMMQTLVHVL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAAAAACGGAGAGCAAAAAGACTCTGATGATCAAGTTTCGAACAAGAGAATCGCGAAACAAGTCGAGAGGAGGCAAGAGAAGGTGTTGAGATCGAGGTCGGTGAA
GAGGGTTTGCTCTAAGAGGATTAGGAGGCTGAGGAAGATGATTCCAAAGGGTGAATCAATGGAGTTGAATGGACTTTTTAGAGAGACAGCTGATTATATTGTGTGGTTGC
AATTGAAAGTGAGGATGATGCAAACTTTAGTTCATGTGTTGAATGGCTCCGATGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAAAAACGGAGAGCAAAAAGACTCTGATGATCAAGTTTCGAACAAGAGAATCGCGAAACAAGTCGAGAGGAGGCAAGAGAAGGTGTTGAGATCGAGGTCGGTGAA
GAGGGTTTGCTCTAAGAGGATTAGGAGGCTGAGGAAGATGATTCCAAAGGGTGAATCAATGGAGTTGAATGGACTTTTTAGAGAGACAGCTGATTATATTGTGTGGTTGC
AATTGAAAGTGAGGATGATGCAAACTTTAGTTCATGTGTTGAATGGCTCCGATGAATGA
Protein sequenceShow/hide protein sequence
MQKNGEQKDSDDQVSNKRIAKQVERRQEKVLRSRSVKRVCSKRIRRLRKMIPKGESMELNGLFRETADYIVWLQLKVRMMQTLVHVLNGSDE