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Tan0009402 (gene) of Snake gourd v1 genome

Gene IDTan0009402
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionVPS13 domain-containing protein
Genome locationLG09:53417055..53417249
RNA-Seq ExpressionTan0009402
SyntenyTan0009402
Gene Ontology termsNA
InterPro domainsIPR031646 - Vacuolar protein sorting-associated protein 13, second N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038223.1 putative vacuolar protein sorting-associated protein 13A isoform X1 [Cucumis melo var. makuwa]6.9e-2190.2Show/hide
Query:  RYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSWGYLGQRL
        +YGRFRPWCSPL RKVKGWQ+LWWHYAQQSVL DVRKKLKKCSW YLGQRL
Subjt:  RYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSWGYLGQRL
XP_008443663.1 PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X1 [Cucumis melo]6.9e-2190.2Show/hide
Query:  RYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSWGYLGQRL
        +YGRFRPWCSPL RKVKGWQ+LWWHYAQQSVL DVRKKLKKCSW YLGQRL
Subjt:  RYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSWGYLGQRL
XP_016899794.1 PREDICTED: uncharacterized protein LOC103487212 isoform X2 [Cucumis melo]6.9e-2190.2Show/hide
Query:  RYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSWGYLGQRL
        +YGRFRPWCSPL RKVKGWQ+LWWHYAQQSVL DVRKKLKKCSW YLGQRL
Subjt:  RYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSWGYLGQRL
XP_022988633.1 uncharacterized protein LOC111485823 isoform X1 [Cucurbita maxima]2.0e-2088.24Show/hide
Query:  RYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSWGYLGQRL
        +YGRFRPWC PL RKVKGWQ+LWWHYAQQSVL DVRKKLKKCSW YLGQRL
Subjt:  RYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSWGYLGQRL
XP_031736165.1 uncharacterized protein LOC101204937 isoform X4 [Cucumis sativus]3.4e-2088.24Show/hide
Query:  RYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSWGYLGQRL
        RYGRFRPWC PL RKVKGWQ+LWWHYAQQSVL DVRK+LKKCSW YLGQRL
Subjt:  RYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSWGYLGQRL
TrEMBL top hitse value%identityAlignment
A0A0A0LXR7 VPS13 domain-containing protein3.8e-2579.69Show/hide
Query:  MAINQSPPNLLFCRYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSWGYLGQRL
        M +  S PN L+CRYGRFRPWC PL RKVKGWQ+LWWHYAQQSVL DVRK+LKKCSW YLGQRL
Subjt:  MAINQSPPNLLFCRYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSWGYLGQRL
A0A1S3B8J3 putative vacuolar protein sorting-associated protein 13A isoform X13.3e-2190.2Show/hide
Query:  RYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSWGYLGQRL
        +YGRFRPWCSPL RKVKGWQ+LWWHYAQQSVL DVRKKLKKCSW YLGQRL
Subjt:  RYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSWGYLGQRL
A0A1S4DUY4 uncharacterized protein LOC103487212 isoform X23.3e-2190.2Show/hide
Query:  RYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSWGYLGQRL
        +YGRFRPWCSPL RKVKGWQ+LWWHYAQQSVL DVRKKLKKCSW YLGQRL
Subjt:  RYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSWGYLGQRL
A0A5A7T5L4 Putative vacuolar protein sorting-associated protein 13A isoform X13.3e-2190.2Show/hide
Query:  RYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSWGYLGQRL
        +YGRFRPWCSPL RKVKGWQ+LWWHYAQQSVL DVRKKLKKCSW YLGQRL
Subjt:  RYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSWGYLGQRL
A0A6J1JMV4 uncharacterized protein LOC111485823 isoform X19.7e-2188.24Show/hide
Query:  RYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSWGYLGQRL
        +YGRFRPWC PL RKVKGWQ+LWWHYAQQSVL DVRKKLKKCSW YLGQRL
Subjt:  RYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSWGYLGQRL
SwissProt top hitse value%identityAlignment
Q55EI3 Putative vacuolar protein sorting-associated protein 13E3.6e-0443.18Show/hide
Query:  RYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSW
        RY +FRP C     +VKG   +WWH+A +S++SD R K  + +W
Subjt:  RYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSW
Arabidopsis top hitse value%identityAlignment
AT5G24740.1 Protein of unknown function (DUF1162)2.9e-0970.59Show/hide
Query:  RYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSD
        RYGR+RP  + L RK  GWQ LWWHYAQ SVLSD
Subjt:  RYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSD
AT5G24740.2 Protein of unknown function (DUF1162)1.2e-1568.63Show/hide
Query:  RYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSWGYLGQRL
        RYGR+RP  + L RK  GWQ LWWHYAQ SVLSDVRKKL K SW +L QR+
Subjt:  RYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSWGYLGQRL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTATAAATCAGAGTCCACCTAACCTCTTATTCTGCAGGTATGGAAGATTTCGCCCCTGGTGTTCTCCCCTGCCAAGGAAAGTTAAGGGTTGGCAAGTATTATGGTG
GCATTATGCACAACAATCTGTCTTGTCAGATGTACGAAAGAAATTAAAGAAATGTTCATGGGGATATCTTGGACAGAGACTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTATAAATCAGAGTCCACCTAACCTCTTATTCTGCAGGTATGGAAGATTTCGCCCCTGGTGTTCTCCCCTGCCAAGGAAAGTTAAGGGTTGGCAAGTATTATGGTG
GCATTATGCACAACAATCTGTCTTGTCAGATGTACGAAAGAAATTAAAGAAATGTTCATGGGGATATCTTGGACAGAGACTGTAA
Protein sequenceShow/hide protein sequence
MAINQSPPNLLFCRYGRFRPWCSPLPRKVKGWQVLWWHYAQQSVLSDVRKKLKKCSWGYLGQRL