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Tan0009512 (gene) of Snake gourd v1 genome

Gene IDTan0009512
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationLG07:35147245..35174600
RNA-Seq ExpressionTan0009512
SyntenyTan0009512
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043652.1 uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa]8.0e-0951.35Show/hide
Query:  MREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPP--PQQREDDHDNEYEGGSSDQLEDDQVTLIAAPRR
        +REAQQG + RMI  +E L++R+ R E++N AR R+PPP  P    + +DN+ EG  SD L+DDQVTL+  PRR
Subjt:  MREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPP--PQQREDDHDNEYEGGSSDQLEDDQVTLIAAPRR

XP_022157414.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia]3.8e-1160.27Show/hide
Query:  REAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDDQVTLIAAPRRGE
        REA +GT+ERMIR +E L+ERI RLE QN A  R+PPPP  R  D D EYEG  SD  EDDQ T++A PR G+
Subjt:  REAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDDQVTLIAAPRRGE

XP_022971169.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111469948, partial [Cucurbita maxima]9.8e-0754.79Show/hide
Query:  MREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDD-QVTLIAAPRR
        +REAQQ TMER+IRGIEEL++RI RLE+QN AR+RIP P    +      YEG +SD  ED+ QV  + + RR
Subjt:  MREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDD-QVTLIAAPRR

XP_023520282.1 uncharacterized protein LOC111783592 [Cucurbita pepo subsp. pepo]6.3e-0658.06Show/hide
Query:  MREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDD
        +REAQQ TMER+IRGIEEL++RI RLE+QN AR+RIP P    +      YEG +SD  ED+
Subjt:  MREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDD

XP_023520835.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111784339 [Cucurbita pepo subsp. pepo]6.3e-0658.06Show/hide
Query:  MREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDD
        +REAQQ TMER+IRGIEEL++RI RLE+QN AR+RIP P    +      YEG +SD  ED+
Subjt:  MREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDD

TrEMBL top hitse value%identityAlignment
A0A5A7TK52 Retrotrans_gag domain-containing protein3.9e-0951.35Show/hide
Query:  MREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPP--PQQREDDHDNEYEGGSSDQLEDDQVTLIAAPRR
        +REAQQG + RMI  +E L++R+ R E++N AR R+PPP  P    + +DN+ EG  SD L+DDQVTL+  PRR
Subjt:  MREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPP--PQQREDDHDNEYEGGSSDQLEDDQVTLIAAPRR

A0A5A7TYI0 Uncharacterized protein7.5e-0549.15Show/hide
Query:  IEELSERIRRLEVQNHARRRIPPP--PQQREDDHDNEYEGGSSDQLEDDQVTLIAAPRR
        +E L++R+ RLE++N AR R+PPP  P    + ++N+YEG   D L+DDQVTL+  PRR
Subjt:  IEELSERIRRLEVQNHARRRIPPP--PQQREDDHDNEYEGGSSDQLEDDQVTLIAAPRR

A0A5D3CHG3 Retrotrans_gag domain-containing protein2.6e-0549.21Show/hide
Query:  MIRGIEELSERIRRLEVQNHARRRIPPP--PQQREDDHDNEYEGGSSDQLEDDQVTLIAAPRR
        MI  +E L++R+ R E++N AR R+PPP  P    + +DN+ EG  SD L+DDQVTL+  PRR
Subjt:  MIRGIEELSERIRRLEVQNHARRRIPPP--PQQREDDHDNEYEGGSSDQLEDDQVTLIAAPRR

A0A6J1DWE9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110241151.9e-1160.27Show/hide
Query:  REAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDDQVTLIAAPRRGE
        REA +GT+ERMIR +E L+ERI RLE QN A  R+PPPP  R  D D EYEG  SD  EDDQ T++A PR G+
Subjt:  REAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDDQVTLIAAPRRGE

A0A6J1I7T3 LOW QUALITY PROTEIN: uncharacterized protein LOC1114699484.7e-0754.79Show/hide
Query:  MREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDD-QVTLIAAPRR
        +REAQQ TMER+IRGIEEL++RI RLE+QN AR+RIP P    +      YEG +SD  ED+ QV  + + RR
Subjt:  MREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDD-QVTLIAAPRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGAGGCACAACAAGGAACTATGGAGAGAATGATTCGTGGAATAGAAGAGTTATCGGAGCGTATACGGAGGTTGGAGGTTCAAAACCACGCTAGGAGGAGAATTCC
ACCCCCTCCACAACAACGTGAGGATGACCATGACAACGAATATGAGGGAGGAAGTTCTGATCAACTAGAAGATGACCAAGTTACATTAATAGCAGCACCACGAAGGGGAG
AAAGACAATCATTCAAGCTAGACTTGATCAATCTTACTTGTGGAGTGATTCGAATCTCATACAAGTTCTCTTGGCTTGAGATGCTTGATCACAAGCTTGACTTGATCAAT
CTTCCTTGTGGAGTGATTCGGATCTCAAGTAAGTGTTTTCTTGCCTTGAGATATTTGATCGACAAAGTGTTCAAAGTATGTAACATACATTGGATTGCAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGAGGCACAACAAGGAACTATGGAGAGAATGATTCGTGGAATAGAAGAGTTATCGGAGCGTATACGGAGGTTGGAGGTTCAAAACCACGCTAGGAGGAGAATTCC
ACCCCCTCCACAACAACGTGAGGATGACCATGACAACGAATATGAGGGAGGAAGTTCTGATCAACTAGAAGATGACCAAGTTACATTAATAGCAGCACCACGAAGGGGAG
AAAGACAATCATTCAAGCTAGACTTGATCAATCTTACTTGTGGAGTGATTCGAATCTCATACAAGTTCTCTTGGCTTGAGATGCTTGATCACAAGCTTGACTTGATCAAT
CTTCCTTGTGGAGTGATTCGGATCTCAAGTAAGTGTTTTCTTGCCTTGAGATATTTGATCGACAAAGTGTTCAAAGTATGTAACATACATTGGATTGCAAATTAG
Protein sequenceShow/hide protein sequence
MREAQQGTMERMIRGIEELSERIRRLEVQNHARRRIPPPPQQREDDHDNEYEGGSSDQLEDDQVTLIAAPRRGERQSFKLDLINLTCGVIRISYKFSWLEMLDHKLDLIN
LPCGVIRISSKCFLALRYLIDKVFKVCNIHWIAN