; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0009529 (gene) of Snake gourd v1 genome

Gene IDTan0009529
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionLSD1 zinc finger family protein
Genome locationLG01:25237967..25241508
RNA-Seq ExpressionTan0009529
SyntenyTan0009529
Gene Ontology termsGO:0034051 - negative regulation of plant-type hypersensitive response (biological process)
GO:0045595 - regulation of cell differentiation (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650032.1 hypothetical protein Csa_010851 [Cucumis sativus]3.1e-5986.82Show/hide
Query:  HIIKMPFPPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCR
        +I KMPFPPVTCCQ+QI+CSGCKNLLIYPAGATSICCALCHAV+PVPTSGL MARLVC GC+TLLMYSRGA SVQCSCCRT+N+AS+ANQ AHINCGNCR
Subjt:  HIIKMPFPPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCR

Query:  VLLMYQCGAHSVKCTLCNFVTSVGTWRSN
        VLLMYQC AHSVKCTLCNFVTSVG  R N
Subjt:  VLLMYQCGAHSVKCTLCNFVTSVGTWRSN

XP_008448703.1 PREDICTED: protein LOL1 isoform X1 [Cucumis melo]3.4e-5886.61Show/hide
Query:  HIIKMPFPPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCR
        +I KMPFP VTCCQ+QI+CSGCKN+LIYPAGATSICCALCHAV+PVPTSGL MARLVC GC+TLLMYSRGATSVQCSCCRT+N+ASKANQ AH NCGNCR
Subjt:  HIIKMPFPPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCR

Query:  VLLMYQCGAHSVKCTLCNFVTSVGTWR
        VLLMYQC AHSVKCTLCNFVTSVG  R
Subjt:  VLLMYQCGAHSVKCTLCNFVTSVGTWR

XP_022145337.1 protein LSD1-like [Momordica charantia]1.6e-5586.78Show/hide
Query:  MPFPPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM
        MP PPVTCCQS++VCSGCKNLLIYP GATSICC LCH+VSPVPT GL MARLVCKGCHTLL++SRGATSVQCSCCRTVNSASKANQTA INC NCR+LLM
Subjt:  MPFPPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM

Query:  YQCGAHSVKCTLCNFVTSVGT
        YQCGAHSV+CTLCNFVT VG+
Subjt:  YQCGAHSVKCTLCNFVTSVGT

XP_031738784.1 protein LSD1 [Cucumis sativus]3.4e-5888Show/hide
Query:  MPFPPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM
        MPFPPVTCCQ+QI+CSGCKNLLIYPAGATSICCALCHAV+PVPTSGL MARLVC GC+TLLMYSRGA SVQCSCCRT+N+AS+ANQ AHINCGNCRVLLM
Subjt:  MPFPPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM

Query:  YQCGAHSVKCTLCNFVTSVGTWRSN
        YQC AHSVKCTLCNFVTSVG  R N
Subjt:  YQCGAHSVKCTLCNFVTSVGTWRSN

XP_038903355.1 protein LSD1-like [Benincasa hispida]7.0e-5689.17Show/hide
Query:  MPFPPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM
        MPFPPVTCC++ IVCSGCK LLIYPAGAT ICCALCH VSPVPTSGL MARLVC GCHTLLMYSRGATSVQCSCCRTVN+AS+ANQ AHINCGNCRV+LM
Subjt:  MPFPPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM

Query:  YQCGAHSVKCTLCNFVTSVG
        YQ GAHSVKCTLCNFVTSVG
Subjt:  YQCGAHSVKCTLCNFVTSVG

TrEMBL top hitse value%identityAlignment
A0A059CIG5 Uncharacterized protein3.0e-4475.21Show/hide
Query:  PPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLMYQC
        PPV   QSQ+VCSGC+NLL+YPAGATS+CCA+C+AV+ VP  G  MA+LVC GCHTLLMY RGATSVQCSCC TVN A +ANQ AH+NCGNCR+LLMYQ 
Subjt:  PPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLMYQC

Query:  GAHSVKCTLCNFVTSVG
        GA SVKC +CNFVTSVG
Subjt:  GAHSVKCTLCNFVTSVG

A0A068UZC5 Uncharacterized protein3.0e-4471.9Show/hide
Query:  MPF-PPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLL
        +PF PP T  QSQ+VCSGC+NLL+YP GATS+CCA+C+AV+ VP  G  MA+LVC GCHTLLMY RGATSVQCSCC T+N A +ANQ AH+NCGNCR+LL
Subjt:  MPF-PPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLL

Query:  MYQCGAHSVKCTLCNFVTSVG
        MYQ GA SVKC +CNFVTS+G
Subjt:  MYQCGAHSVKCTLCNFVTSVG

A0A1S3BJQ2 protein LSD1 isoform X21.1e-5479.41Show/hide
Query:  MPFPPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASK-------------ANQT
        MPFP VTCCQ+QI+CSGCKN+LIYPAGATSICCALCHAV+PVPTSGL MARLVC GC+TLLMYSRGATSVQCSCCRT+N+ASK             ANQ 
Subjt:  MPFPPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASK-------------ANQT

Query:  AHINCGNCRVLLMYQCGAHSVKCTLCNFVTSVGTWR
        AH NCGNCRVLLMYQC AHSVKCTLCNFVTSVG  R
Subjt:  AHINCGNCRVLLMYQCGAHSVKCTLCNFVTSVGTWR

A0A1S3BKC0 protein LOL1 isoform X11.6e-5886.61Show/hide
Query:  HIIKMPFPPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCR
        +I KMPFP VTCCQ+QI+CSGCKN+LIYPAGATSICCALCHAV+PVPTSGL MARLVC GC+TLLMYSRGATSVQCSCCRT+N+ASKANQ AH NCGNCR
Subjt:  HIIKMPFPPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCR

Query:  VLLMYQCGAHSVKCTLCNFVTSVGTWR
        VLLMYQC AHSVKCTLCNFVTSVG  R
Subjt:  VLLMYQCGAHSVKCTLCNFVTSVGTWR

A0A6J1CWA3 protein LSD1-like7.6e-5686.78Show/hide
Query:  MPFPPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM
        MP PPVTCCQS++VCSGCKNLLIYP GATSICC LCH+VSPVPT GL MARLVCKGCHTLL++SRGATSVQCSCCRTVNSASKANQTA INC NCR+LLM
Subjt:  MPFPPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM

Query:  YQCGAHSVKCTLCNFVTSVGT
        YQCGAHSV+CTLCNFVT VG+
Subjt:  YQCGAHSVKCTLCNFVTSVGT

SwissProt top hitse value%identityAlignment
P94077 Protein LSD14.9e-2852.07Show/hide
Query:  QSQIVCSGCKNLLIYPAGATSICCALCHAVS--PVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSA-SKANQTAH--------INCGNCRVL
        Q Q+VC GC+NLL+YP GA+++ CALC+ ++  P P     MA ++C GC T+LMY+RGA+SV+CSCC+T N   + +NQ AH        INCG+CR  
Subjt:  QSQIVCSGCKNLLIYPAGATSICCALCHAVS--PVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSA-SKANQTAH--------INCGNCRVL

Query:  LMYQCGAHSVKCTLCNFVTSV
        LMY  GA SVKC +C FVT+V
Subjt:  LMYQCGAHSVKCTLCNFVTSV

Q0J7V9 Protein LSD12.4e-4672.5Show/hide
Query:  MPFPPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM
        +PF P    QSQ+VCSGC+NLL+YPAGATS+CCA+C  V+ VP  G  MA+LVC GCHTLLMY RGATSVQCSCC TVN A +ANQ AH+NCGNCR+LLM
Subjt:  MPFPPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM

Query:  YQCGAHSVKCTLCNFVTSVG
        YQ GA SVKC +CNFVTSVG
Subjt:  YQCGAHSVKCTLCNFVTSVG

Q2QMB3 Protein LOL29.3e-3559.82Show/hide
Query:  QSQIVCSGCKNLLIYPAGATSICCALCHAV-SPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLMYQCGAHSV
        QSQIVC GC+N+L+YP GA S+CCA+CHAV S  P+ G+ +A L+C GC TLLMY+R ATSV+CSCC TVN     +  AH+NCG C+ +LMY  GA SV
Subjt:  QSQIVCSGCKNLLIYPAGATSICCALCHAV-SPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLMYQCGAHSV

Query:  KCTLCNFVTSVG
        KC +CNF+T+ G
Subjt:  KCTLCNFVTSVG

Q6ASS2 Protein LOL33.7e-3154.87Show/hide
Query:  QSQIVCSGCKNLLIYPAGATSICCALCHAVS--PVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLMYQCGAHS
        QSQIVC GC+++L YP+GA S+CCALC A++  P P   + MA L+C GC TLLMY+R A +V+CSCC TVN     N  AH++CG CR  LMY  GA S
Subjt:  QSQIVCSGCKNLLIYPAGATSICCALCHAVS--PVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLMYQCGAHS

Query:  VKCTLCNFVTSVG
        VKC +C+++T+ G
Subjt:  VKCTLCNFVTSVG

Q93ZB1 Protein LOL14.9e-4473.68Show/hide
Query:  TCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLMYQCGAH
        T  QSQ+VCSGC+NLL+YP GATS+CCA+C+AV+ VP  G  MA+LVC GCHTLLMY RGATSVQCSCC TVN A +ANQ AH+NCGNC +LLMYQ GA 
Subjt:  TCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLMYQCGAH

Query:  SVKCTLCNFVTSVG
        SVKC +CNFVTSVG
Subjt:  SVKCTLCNFVTSVG

Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 12.7e-4568.46Show/hide
Query:  FLQQHIIK--MPFPPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHI
        FL + I K  + F   T  QSQ+VCSGC+NLL+YP GATS+CCA+C+AV+ VP  G  MA+LVC GCHTLLMY RGATSVQCSCC TVN A +ANQ AH+
Subjt:  FLQQHIIK--MPFPPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHI

Query:  NCGNCRVLLMYQCGAHSVKCTLCNFVTSVG
        NCGNC +LLMYQ GA SVKC +CNFVTSVG
Subjt:  NCGNCRVLLMYQCGAHSVKCTLCNFVTSVG

AT1G32540.2 lsd one like 13.5e-4573.68Show/hide
Query:  TCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLMYQCGAH
        T  QSQ+VCSGC+NLL+YP GATS+CCA+C+AV+ VP  G  MA+LVC GCHTLLMY RGATSVQCSCC TVN A +ANQ AH+NCGNC +LLMYQ GA 
Subjt:  TCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLMYQCGAH

Query:  SVKCTLCNFVTSVG
        SVKC +CNFVTSVG
Subjt:  SVKCTLCNFVTSVG

AT1G32540.3 lsd one like 13.5e-4573.68Show/hide
Query:  TCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLMYQCGAH
        T  QSQ+VCSGC+NLL+YP GATS+CCA+C+AV+ VP  G  MA+LVC GCHTLLMY RGATSVQCSCC TVN A +ANQ AH+NCGNC +LLMYQ GA 
Subjt:  TCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLMYQCGAH

Query:  SVKCTLCNFVTSVG
        SVKC +CNFVTSVG
Subjt:  SVKCTLCNFVTSVG

AT4G20380.1 LSD1 zinc finger family protein3.5e-2952.07Show/hide
Query:  QSQIVCSGCKNLLIYPAGATSICCALCHAVS--PVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSA-SKANQTAH--------INCGNCRVL
        Q Q+VC GC+NLL+YP GA+++ CALC+ ++  P P     MA ++C GC T+LMY+RGA+SV+CSCC+T N   + +NQ AH        INCG+CR  
Subjt:  QSQIVCSGCKNLLIYPAGATSICCALCHAVS--PVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSA-SKANQTAH--------INCGNCRVL

Query:  LMYQCGAHSVKCTLCNFVTSV
        LMY  GA SVKC +C FVT+V
Subjt:  LMYQCGAHSVKCTLCNFVTSV

AT4G20380.2 LSD1 zinc finger family protein3.5e-2952.07Show/hide
Query:  QSQIVCSGCKNLLIYPAGATSICCALCHAVS--PVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSA-SKANQTAH--------INCGNCRVL
        Q Q+VC GC+NLL+YP GA+++ CALC+ ++  P P     MA ++C GC T+LMY+RGA+SV+CSCC+T N   + +NQ AH        INCG+CR  
Subjt:  QSQIVCSGCKNLLIYPAGATSICCALCHAVS--PVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSA-SKANQTAH--------INCGNCRVL

Query:  LMYQCGAHSVKCTLCNFVTSV
        LMY  GA SVKC +C FVT+V
Subjt:  LMYQCGAHSVKCTLCNFVTSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTCGTCTTTGCCTGAGAAACTGAGTTTTGAAGAAATTCCAAAGGAAAAGACGTTTCTCCAACAACACATCATAAAAATGCCATTTCCTCCAGTTACTTGTTGTCA
AAGCCAAATAGTGTGCTCTGGATGTAAAAATCTGTTGATCTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATGCTGTATCCCCTGTGCCAACCTCTGGCT
TAGCGATGGCTCGGCTGGTGTGTAAAGGCTGCCACACCCTGCTCATGTACAGTCGTGGGGCGACAAGTGTACAATGTTCTTGTTGTCGCACTGTCAATTCAGCATCCAAA
GCAAATCAGACGGCTCACATCAACTGTGGGAACTGTAGGGTGCTGCTGATGTATCAATGTGGAGCCCACTCTGTCAAATGTACTCTTTGCAATTTTGTGACCTCAGTTGG
GACTTGGAGGTCTAATTAA
mRNA sequenceShow/hide mRNA sequence
TCTCAATCAGTGTCAACTTTTTTTAGAGGGAGGGAATTTCCTTTCCAAAGTGGTTCTAATACCAAAGTATCAACTCCCCAACACCTATCATTTACTGCGAGCTGCAAAGT
TCTTCCATTTCCAGAGATGGTAGGAACGAAGATGAAGCATGGTGTCGTCTTTGCCTGAGAAACTGAGTTTTGAAGAAATTCCAAAGGAAAAGACGTTTCTCCAACAACAC
ATCATAAAAATGCCATTTCCTCCAGTTACTTGTTGTCAAAGCCAAATAGTGTGCTCTGGATGTAAAAATCTGTTGATCTATCCTGCTGGAGCAACCTCCATTTGCTGTGC
TCTTTGCCATGCTGTATCCCCTGTGCCAACCTCTGGCTTAGCGATGGCTCGGCTGGTGTGTAAAGGCTGCCACACCCTGCTCATGTACAGTCGTGGGGCGACAAGTGTAC
AATGTTCTTGTTGTCGCACTGTCAATTCAGCATCCAAAGCAAATCAGACGGCTCACATCAACTGTGGGAACTGTAGGGTGCTGCTGATGTATCAATGTGGAGCCCACTCT
GTCAAATGTACTCTTTGCAATTTTGTGACCTCAGTTGGGACTTGGAGGTCTAATTAAGTTCATAAATTTGCCCTTTTTGTCTCAAACTTCAGAGCACTTGGAATGAATGA
GGATGAACCCTAAAAATCACAACTTTTTCTATTGGGTTCGTAATGAAAAGGGAATTTTTAATTAGGATTAACACTGTCCTGTACCCTATTTTTGAGAAGAAAAAAAATTG
ATCTTTTTAAGATAAAGTCACACTGTTTAGAAATATGATATTTTGATGAAGAATGAAGCTACGATAGTAAAAAAAGAAGTCTATTCTGATGGAGATAGTTTTCCTTCTTA
GCTTATTAGGGAAGAGTTCTGAATCCTTAGACACGGTTTAAGAC
Protein sequenceShow/hide protein sequence
MVSSLPEKLSFEEIPKEKTFLQQHIIKMPFPPVTCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGLAMARLVCKGCHTLLMYSRGATSVQCSCCRTVNSASK
ANQTAHINCGNCRVLLMYQCGAHSVKCTLCNFVTSVGTWRSN