CuGenDBv2

Gene ID	Tan0009551
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Mitochondrial
Genome location	LG01:115678885..115681374
RNA-Seq Expression	Tan0009551
Synteny	Tan0009551
Gene Ontology terms	GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0004386 - helicase activity (molecular function)
InterPro domains	IPR019716 - Ribosomal protein L53, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7024167.1 hypothetical protein SDJN02_12980, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.0e-61

96.03

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTP+QTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPAPSIKVRVFVLP
        TWPVIIPDEELNQPAPSIKVR+ +LP
Subjt:  TWPVIIPDEELNQPAPSIKVRVFVLP

XP_022974805.1 uncharacterized protein LOC111473560 isoform X1 [Cucurbita maxima]

4.1e-59

97.52

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPAPSIKVR
        TWPVIIPDEELNQPAPSIK R
Subjt:  TWPVIIPDEELNQPAPSIKVR

XP_022974807.1 uncharacterized protein LOC111473560 isoform X2 [Cucurbita maxima]

1.2e-58

98.32

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPAPSIK
        TWPVIIPDEELNQPAPSIK
Subjt:  TWPVIIPDEELNQPAPSIK

XP_022974808.1 uncharacterized protein LOC111473560 isoform X3 [Cucurbita maxima]

1.8e-59

96.72

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPAPSIKVRV
        TWPVIIPDEELNQPAPSIK+R+
Subjt:  TWPVIIPDEELNQPAPSIKVRV

XP_023536065.1 uncharacterized protein LOC111797318 [Cucurbita pepo subsp. pepo]

7.0e-59

98.32

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVK+EFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRN ILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPAPSIK
        TWPVIIPDEELNQPAPSIK
Subjt:  TWPVIIPDEELNQPAPSIK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1FNY6 uncharacterized protein LOC111445972

8.4e-58

95.04

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIR MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPAPSIKVR
        TWPVIIPDEELN P PSIK R
Subjt:  TWPVIIPDEELNQPAPSIKVR

A0A6J1IB98 uncharacterized protein LOC111473560 isoform X2

5.8e-59

98.32

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPAPSIK
        TWPVIIPDEELNQPAPSIK
Subjt:  TWPVIIPDEELNQPAPSIK

A0A6J1IEW0 uncharacterized protein LOC111473560 isoform X1

2.0e-59

97.52

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPAPSIKVR
        TWPVIIPDEELNQPAPSIK R
Subjt:  TWPVIIPDEELNQPAPSIKVR

A0A6J1IHE6 uncharacterized protein LOC111473560 isoform X3

8.9e-60

96.72

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPAPSIKVRV
        TWPVIIPDEELNQPAPSIK+R+
Subjt:  TWPVIIPDEELNQPAPSIKVRV

A0A6J1IZE5 uncharacterized protein LOC111481279

6.4e-58

95.87

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIR  ILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPAPSIKVR
        TWPVIIPDEELN P PSIK R
Subjt:  TWPVIIPDEELNQPAPSIKVR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G39600.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

4.0e-52

80.99

Show/hide

Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFN LDPRLASC+EFLAQCNARKAKESNP CQ++VKRRTD+ PPQI VTFVNGVEE FDA +T AQ+IR MIL+KGQ LETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNQPAPSIKVR
         WPVIIPDEEL Q AP +K R
Subjt:  TWPVIIPDEELNQPAPSIKVR

Sequences

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CDS sequence

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ATGTTGAAGTTTCTCTCCAAAGTGAAGATCGAATTCAATGCCCTCGACCCACGCTTGGCGTCTTGCATGGAATTCTTGGCGCAGTGTAATGCTCGCAAGGCCAAGGAATC
GAATCCCGCTTGCCAGTTGATCGTTAAGCGCCGAACCGACGACCACCCGCCCCAGATCGCCGTCACCTTCGTCAATGGAGTCGAAGAGGTTTTCGACGCTACCTCTACTC
CTGCTCAAACAATCAGGAATATGATTCTTGAAAAGGGCCAACTCCTTGAGACCGAGCAAATGTTCCGAGAAGCTGGAGAAACTTGGCCGGTTATCATTCCCGATGAGGAG
CTTAATCAACCCGCTCCCAGTATCAAGGTTCGTGTTTTTGTTCTCCCTTACTCTGAACATTTCTTGGTCCTTTTTTGCTTGAGTTTTCATTTTGGTACTACATGTGGCAT
TTTGTCGAACAACATATGTGCACGAAGAGTTTGA

mRNA sequence

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ATTTATATCTCAAAACGCCCCGTTTCGTGAAAAGAAAAAACCCCAAAAACCTCTTCCCGCACGCTCCAATCATTTTGGTCGGGAAGTTGTGGCGAAAGAAATAAGCAGAA
ATGTTGAAGTTTCTCTCCAAAGTGAAGATCGAATTCAATGCCCTCGACCCACGCTTGGCGTCTTGCATGGAATTCTTGGCGCAGTGTAATGCTCGCAAGGCCAAGGAATC
GAATCCCGCTTGCCAGTTGATCGTTAAGCGCCGAACCGACGACCACCCGCCCCAGATCGCCGTCACCTTCGTCAATGGAGTCGAAGAGGTTTTCGACGCTACCTCTACTC
CTGCTCAAACAATCAGGAATATGATTCTTGAAAAGGGCCAACTCCTTGAGACCGAGCAAATGTTCCGAGAAGCTGGAGAAACTTGGCCGGTTATCATTCCCGATGAGGAG
CTTAATCAACCCGCTCCCAGTATCAAGGTTCGTGTTTTTGTTCTCCCTTACTCTGAACATTTCTTGGTCCTTTTTTGCTTGAGTTTTCATTTTGGTACTACATGTGGCAT
TTTGTCGAACAACATATGTGCACGAAGAGTTTGATGGATTTTCTTCTTTTAGAATGAAGTTTTTGCAACTGTAGAGTGTTCTCCATCTCAAACTAATCCTAGAAAAGCAG
AAGACAAGCAGTAACACTTTTGTCTCAATTGATCAAATTACGGATGTACCTGAAAGAGGGGGAGTGCATTCTGTCCTCACAATAATAGAATCAAGTTCCATGAAGTAGAA
GTGCTGATTCTGAGATGTTTTTCGTTATAGATTTCCTAGGGATGTTTGCTAGTCTTGTCTTCTTAGAAGTGAAAGAATTATGCATCAAGTTCTAAATTTGGTCTGTGGAT
GCCGTGTTGAATTTCAAAAGCCATTTGTTTATGAGAACTTGTTCCCAATACATGCTTTATAACGAGTTTAAAATTTTGTTACCCGTCACTTTCAGATACTCCGTCCTCAT
GCTTTGTCGGAGTGAGTTATACACTATCTTTATTAAAG

Protein sequence

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MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGETWPVIIPDEE
LNQPAPSIKVRVFVLPYSEHFLVLFCLSFHFGTTCGILSNNICARRV

Tan0009551 (gene) of Snake gourd v1 genome