CuGenDBv2

Gene ID	Tan0009557
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Succinate dehydrogenase assembly factor 4, mitochondrial
Genome location	LG07:8483239..8485382
RNA-Seq Expression	Tan0009557
Synteny	Tan0009557
Gene Ontology terms	GO:0034553 - mitochondrial respiratory chain complex II assembly (biological process) GO:0005739 - mitochondrion (cellular component)
InterPro domains	IPR012875 - Succinate dehydrogenase assembly factor 4

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605777.1 Succinate dehydrogenase assembly factor 4, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

2.8e-32

80.58

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Query:  MSTNLSRLFSSP----LPAVSRLTSISLSRLVSSSANQQPSRSEQGVSGEEQREAGKESLPNPHEAAGDDRDGEDEGADLNEATGEVGGPKGPEPTRYGD
        MS+NL+RLFS P    L AV+R TSIS+SRLVSSSANQQPSR EQGV G+EQREAGK SLP+ HEAAGDDRD EDEGAD+N+ATGEVGGPKGPEPTRYGD
Subjt:  MSTNLSRLFSSP----LPAVSRLTSISLSRLVSSSANQQPSRSEQGVSGEEQREAGKESLPNPHEAAGDDRDGEDEGADLNEATGEVGGPKGPEPTRYGD

Query:  WER
        WER
Subjt:  WER

KGN49871.1 hypothetical protein Csa_000062 [Cucumis sativus]

1.3e-29

76.19

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Query:  MSTNLSRLFSSP-----LPAVSRLTSISLSRLVSSSANQQPSRSEQGVSGEEQREAGKESLPNPHEAAGDDRDGEDEGADLNEATGEVGGPKGPEPTRYG
        MS+NLSRLFSSP     LPAVSRLT  SLSR VSSS+NQQPSR E+GVS EEQREAGK S PN HEAAGDDR G+DEG D  + T E+GGPKGPEPTRYG
Subjt:  MSTNLSRLFSSP-----LPAVSRLTSISLSRLVSSSANQQPSRSEQGVSGEEQREAGKESLPNPHEAAGDDRDGEDEGADLNEATGEVGGPKGPEPTRYG

Query:  DWERK
        DWERK
Subjt:  DWERK

XP_022957978.1 succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita moschata]

1.2e-32

81.55

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Query:  MSTNLSRLFSSP----LPAVSRLTSISLSRLVSSSANQQPSRSEQGVSGEEQREAGKESLPNPHEAAGDDRDGEDEGADLNEATGEVGGPKGPEPTRYGD
        MS+NL+RLFS P    L AV+R TSIS+SRLVSSSANQQPSR EQGV GEEQREAGK SLP+ HEAAGDDRD EDEGAD+N+ATGEVGGPKGPEPTRYGD
Subjt:  MSTNLSRLFSSP----LPAVSRLTSISLSRLVSSSANQQPSRSEQGVSGEEQREAGKESLPNPHEAAGDDRDGEDEGADLNEATGEVGGPKGPEPTRYGD

Query:  WER
        WER
Subjt:  WER

XP_022995844.1 succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita maxima]

2.8e-32

80.58

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Query:  MSTNLSRLFSSP----LPAVSRLTSISLSRLVSSSANQQPSRSEQGVSGEEQREAGKESLPNPHEAAGDDRDGEDEGADLNEATGEVGGPKGPEPTRYGD
        MS+NL+RLFS P    L AV+R+TS S+SRLVSSSANQQPSR EQGV GEEQREAGK SLP+ HEAAGDDRD EDEGAD+N+ATGEVGGPKGPEPTRYGD
Subjt:  MSTNLSRLFSSP----LPAVSRLTSISLSRLVSSSANQQPSRSEQGVSGEEQREAGKESLPNPHEAAGDDRDGEDEGADLNEATGEVGGPKGPEPTRYGD

Query:  WER
        WER
Subjt:  WER

XP_023532848.1 succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita pepo subsp. pepo]

1.2e-32

81.55

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Query:  MSTNLSRLFSSP----LPAVSRLTSISLSRLVSSSANQQPSRSEQGVSGEEQREAGKESLPNPHEAAGDDRDGEDEGADLNEATGEVGGPKGPEPTRYGD
        MS+NL+RLFS P    L AV+R TSIS+SRLVSSSANQQPSR EQGV GEEQREAGK SLP+ HEAAGDDRD EDEGAD+N+ATGEVGGPKGPEPTRYGD
Subjt:  MSTNLSRLFSSP----LPAVSRLTSISLSRLVSSSANQQPSRSEQGVSGEEQREAGKESLPNPHEAAGDDRDGEDEGADLNEATGEVGGPKGPEPTRYGD

Query:  WER
        WER
Subjt:  WER

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQ66 Succinate dehydrogenase assembly factor 4, mitochondrial

6.2e-30

76.19

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Query:  MSTNLSRLFSSP-----LPAVSRLTSISLSRLVSSSANQQPSRSEQGVSGEEQREAGKESLPNPHEAAGDDRDGEDEGADLNEATGEVGGPKGPEPTRYG
        MS+NLSRLFSSP     LPAVSRLT  SLSR VSSS+NQQPSR E+GVS EEQREAGK S PN HEAAGDDR G+DEG D  + T E+GGPKGPEPTRYG
Subjt:  MSTNLSRLFSSP-----LPAVSRLTSISLSRLVSSSANQQPSRSEQGVSGEEQREAGKESLPNPHEAAGDDRDGEDEGADLNEATGEVGGPKGPEPTRYG

Query:  DWERK
        DWERK
Subjt:  DWERK

A0A5A7TMD3 Succinate dehydrogenase assembly factor 4, mitochondrial

3.2e-26

71.15

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Query:  MSTNLSRLFSSP-----LPAVSRLTSISLSRLVSSSANQQPSRSEQGVSGEEQREAGKESLPNPHEAAGDDRDGEDEGADLNEATGEVGGPKGPEPTRYG
        MS++LSRLFSSP     LP V RLTS SLSR VSSS+NQQPSRSEQGVS EEQREA K S PN HEAAGDDR  +D+G D  +   E+GGPKG EPTRYG
Subjt:  MSTNLSRLFSSP-----LPAVSRLTSISLSRLVSSSANQQPSRSEQGVSGEEQREAGKESLPNPHEAAGDDRDGEDEGADLNEATGEVGGPKGPEPTRYG

Query:  DWER
        DWER
Subjt:  DWER

A0A6J1H1T7 Succinate dehydrogenase assembly factor 4, mitochondrial

6.0e-33

81.55

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Query:  MSTNLSRLFSSP----LPAVSRLTSISLSRLVSSSANQQPSRSEQGVSGEEQREAGKESLPNPHEAAGDDRDGEDEGADLNEATGEVGGPKGPEPTRYGD
        MS+NL+RLFS P    L AV+R TSIS+SRLVSSSANQQPSR EQGV GEEQREAGK SLP+ HEAAGDDRD EDEGAD+N+ATGEVGGPKGPEPTRYGD
Subjt:  MSTNLSRLFSSP----LPAVSRLTSISLSRLVSSSANQQPSRSEQGVSGEEQREAGKESLPNPHEAAGDDRDGEDEGADLNEATGEVGGPKGPEPTRYGD

Query:  WER
        WER
Subjt:  WER

A0A6J1K722 Succinate dehydrogenase assembly factor 4, mitochondrial

1.3e-32

80.58

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Query:  MSTNLSRLFSSP----LPAVSRLTSISLSRLVSSSANQQPSRSEQGVSGEEQREAGKESLPNPHEAAGDDRDGEDEGADLNEATGEVGGPKGPEPTRYGD
        MS+NL+RLFS P    L AV+R+TS S+SRLVSSSANQQPSR EQGV GEEQREAGK SLP+ HEAAGDDRD EDEGAD+N+ATGEVGGPKGPEPTRYGD
Subjt:  MSTNLSRLFSSP----LPAVSRLTSISLSRLVSSSANQQPSRSEQGVSGEEQREAGKESLPNPHEAAGDDRDGEDEGADLNEATGEVGGPKGPEPTRYGD

Query:  WER
        WER
Subjt:  WER

W9RP47 Succinate dehydrogenase assembly factor 4, mitochondrial

2.1e-09

49.56

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Query:  MSTNLSRLFSS----PLPAV----------SRLTSISLSRLVSSSANQQPSRSEQGVSGEEQREAGKESLPNPHEAAGDDRDGEDEGADLNEATGEVGGP
        M++NL RLFSS      P V          +R  + S SRLVSSSA Q+P   ++ ++ +EQREA  + L N  E   D  + E+EG  LNE TGEVGGP
Subjt:  MSTNLSRLFSS----PLPAV----------SRLTSISLSRLVSSSANQQPSRSEQGVSGEEQREAGKESLPNPHEAAGDDRDGEDEGADLNEATGEVGGP

Query:  KGPEPTRYGDWER
        +GPEPTRYGDWER
Subjt:  KGPEPTRYGDWER

SwissProt top hits

e value

%identity

Alignment

Q9VLU6 Succinate dehydrogenase assembly factor 4, mitochondrial

5.1e-05

83.33

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Query:  NEATGEVGGPKGPEPTRYGDWERK
        N  TGE+GGP GPEPTRYGDWERK
Subjt:  NEATGEVGGPKGPEPTRYGDWERK

Arabidopsis top hits

e value

%identity

Alignment

AT5G67490.1 unknown protein

4.4e-04

33.33

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Query:  MSTNLSRLFSSPLPAVSRLTSISLSRLVSSSANQQPSRSEQGVSGEEQREAGKESLPNPHEAAGDDRDGEDEGAD--LNEATGEVGGPKGPEPTRYGDWE
        M+TN      +P  +VS      +SR +SS     P             +  +    N      ++ +GE  G    +NE TGE+GGP+GPEPTRYGDWE
Subjt:  MSTNLSRLFSSPLPAVSRLTSISLSRLVSSSANQQPSRSEQGVSGEEQREAGKESLPNPHEAAGDDRDGEDEGAD--LNEATGEVGGPKGPEPTRYGDWE

Query:  RK
        ++
Subjt:  RK

Sequences

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CDS sequence

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ATGTCGACCAATCTCAGCCGTCTATTCTCGTCGCCGCTACCGGCGGTCAGTCGCCTCACTTCCATCTCGTTGAGCCGACTCGTCAGCTCCTCGGCGAATCAGCAACCTTC
TCGATCGGAGCAAGGCGTTTCCGGCGAGGAACAACGAGAGGCTGGAAAAGAAAGTTTGCCGAATCCACACGAAGCTGCCGGAGATGATCGAGACGGTGAAGATGAAGGAG
CTGATTTGAACGAAGCGACCGGCGAGGTCGGTGGACCTAAAGGCCCCGAGCCCACCCGGTATGGCGATTGGGAACGAAAAGCTTAA

mRNA sequence

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Protein sequence

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MSTNLSRLFSSPLPAVSRLTSISLSRLVSSSANQQPSRSEQGVSGEEQREAGKESLPNPHEAAGDDRDGEDEGADLNEATGEVGGPKGPEPTRYGDWERKA

Tan0009557 (gene) of Snake gourd v1 genome