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Tan0009614 (gene) of Snake gourd v1 genome

Gene IDTan0009614
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG03:61499766..61500017
RNA-Seq ExpressionTan0009614
SyntenyTan0009614
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]2.1e-1767.86Show/hide
Query:  MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNNDKGKNIIQEKQPPQLA-SVACLSVQ
        MSVMM DV  +  MAEMERKINLLMK V+ERD EIA LK Q+Q +ET ESSQTP V+ +DKGKN++QE QP Q + SVA LSVQ
Subjt:  MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNNDKGKNIIQEKQPPQLA-SVACLSVQ

XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]2.1e-1767.86Show/hide
Query:  MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNNDKGKNIIQEKQPPQLA-SVACLSVQ
        MSVMM DV  +  MAEMERKINLLMK V+ERD EIA LK Q+Q +ET ESSQTP V+ +DKGKN++QE QP Q + SVA LSVQ
Subjt:  MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNNDKGKNIIQEKQPPQLA-SVACLSVQ

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]2.1e-1767.86Show/hide
Query:  MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNNDKGKNIIQEKQPPQLA-SVACLSVQ
        MSVMM DV  +  MAEMERKINLLMK V+ERD EIA LK Q+Q +ET ESSQTP V+ +DKGKN++QE QP Q + SVA LSVQ
Subjt:  MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNNDKGKNIIQEKQPPQLA-SVACLSVQ

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]2.1e-1767.86Show/hide
Query:  MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNNDKGKNIIQEKQPPQLA-SVACLSVQ
        MSVMM DV  +  MAEMERKINLLMK V+ERD EIA LK Q+Q +ET ESSQTP V+ +DKGKN++QE QP Q + SVA LSVQ
Subjt:  MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNNDKGKNIIQEKQPPQLA-SVACLSVQ

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]2.1e-1767.86Show/hide
Query:  MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNNDKGKNIIQEKQPPQLA-SVACLSVQ
        MSVMM DV  +  MAEMERKINLLMK V+ERD EIA LK Q+Q +ET ESSQTP V+ +DKGKN++QE QP Q + SVA LSVQ
Subjt:  MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNNDKGKNIIQEKQPPQLA-SVACLSVQ

TrEMBL top hitse value%identityAlignment
A0A5A7T9K9 Ty3-gypsy retrotransposon protein5.0e-1764.29Show/hide
Query:  MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNNDKGKNIIQEKQPPQLA-SVACLSVQ
        MSVMM D+  +  MAEMERKIN LMKA EERD EI  L+ Q++ +ETTESSQTP V+  DKGKN++QE QP Q + SVA LSVQ
Subjt:  MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNNDKGKNIIQEKQPPQLA-SVACLSVQ

A0A5A7TYE9 Ty3-gypsy retrotransposon protein1.9e-1663.1Show/hide
Query:  MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNNDKGKNIIQEKQPPQLA-SVACLSVQ
        MSVMM D+  +  MAEMERKIN LMK VEERD EI  L+ Q++ +ET ESSQTP V+  DKGKN++QE QP Q + SVA LSVQ
Subjt:  MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNNDKGKNIIQEKQPPQLA-SVACLSVQ

A0A5A7UF60 Ty3-gypsy retrotransposon protein2.5e-1661.9Show/hide
Query:  MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNNDKGKNIIQEKQPPQLA-SVACLSVQ
        MSVMM D+  +  MAEME+KIN LMKAVEERD EI  L+ Q++ +ET ESSQTP V+  DKGKN++QE QP Q + SVA LS+Q
Subjt:  MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNNDKGKNIIQEKQPPQLA-SVACLSVQ

A0A5A7VDN4 Ty3-gypsy retrotransposon protein1.9e-1663.1Show/hide
Query:  MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNNDKGKNIIQEKQPPQLA-SVACLSVQ
        MSVMM D+  +  MAEMERKIN LMKAVEERD EI  L+ Q++ +ET ESSQTP V+  DKGKN++Q+ QP Q + SVA LSVQ
Subjt:  MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNNDKGKNIIQEKQPPQLA-SVACLSVQ

A0A5D3BY54 Ty3-gypsy retrotransposon protein1.3e-1765.48Show/hide
Query:  MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNNDKGKNIIQEKQPPQLA-SVACLSVQ
        MSVMM D+ P+  MAEMERKIN LMKAVEERD EI  L+ Q++ +ET ESSQTP V+  DKGKN++QE QP Q + SVA LSVQ
Subjt:  MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNNDKGKNIIQEKQPPQLA-SVACLSVQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTCATGATGGGTGATGTGGACCCTGACGAAAGGATGGCGGAGATGGAAAGAAAAATCAATCTCCTGATGAAGGCGGTAGAAGAAAGAGATCTTGAAATCGCCTA
CCTCAAAAGCCAAGTCCAAAACAAAGAAACGACTGAATCTAGCCAAACCCCTGCAGTAAGAAACAACGACAAGGGAAAAAATATCATCCAAGAGAAGCAACCGCCTCAAC
TAGCTTCAGTTGCTTGTTTATCCGTCCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGTCATGATGGGTGATGTGGACCCTGACGAAAGGATGGCGGAGATGGAAAGAAAAATCAATCTCCTGATGAAGGCGGTAGAAGAAAGAGATCTTGAAATCGCCTA
CCTCAAAAGCCAAGTCCAAAACAAAGAAACGACTGAATCTAGCCAAACCCCTGCAGTAAGAAACAACGACAAGGGAAAAAATATCATCCAAGAGAAGCAACCGCCTCAAC
TAGCTTCAGTTGCTTGTTTATCCGTCCAATAA
Protein sequenceShow/hide protein sequence
MSVMMGDVDPDERMAEMERKINLLMKAVEERDLEIAYLKSQVQNKETTESSQTPAVRNNDKGKNIIQEKQPPQLASVACLSVQ