CuGenDBv2

Gene ID	Tan0009617
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial
Genome location	LG01:104003646..104012192
RNA-Seq Expression	Tan0009617
Synteny	Tan0009617
Gene Ontology terms	GO:0006450 - regulation of translational fidelity (biological process) GO:0032543 - mitochondrial translation (biological process) GO:0070681 - glutaminyl-tRNAGln biosynthesis via transamidation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0009507 - chloroplast (cellular component) GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016740 - transferase activity (molecular function) GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity (molecular function)
InterPro domains	IPR003837 - Glu-tRNAGln amidotransferase C subunit IPR036113 - Glu-tRNAGln amidotransferase superfamily, subunit C

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008466091.1 PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis melo]

2.7e-57

82.76

Show/hide

Query:  MGSRALPLLKG-----SLKQQIFIFSSFHTRLVSNIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPS
        MGS+ALPLLKG     SLK+QIFI ++FH+  VSNI IRK STA G+ ASLQPPDVPRLA+TARISLTP +VEEFAPKI QVVDWFG+LQTVDLQSIEPS
Subjt:  MGSRALPLLKG-----SLKQQIFIFSSFHTRLVSNIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        IRADTEGGNQRNDV ETFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  IRADTEGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

XP_022143239.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Momordica charantia]

6.5e-59

83.67

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Query:  MGSRALPLLKG-----SLKQQIFIFS--SFHTRLVSNIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIE
        MGS+ALPLLKG     SL++QIFI++   FHT  +S+ +IRKCST P IRASLQPPDVPRLAETARISLTP EVEEFAPKIRQVVDWFG+LQTVDLQSIE
Subjt:  MGSRALPLLKG-----SLKQQIFIFS--SFHTRLVSNIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIE

Query:  PSIRADTEGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        PSIRADTEGGNQRND+SETFENREAMIGAVPVFDEPYIRVPKVLNKE
Subjt:  PSIRADTEGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

XP_022941306.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita moschata]

2.7e-57

84.83

Show/hide

Query:  MGSRALPLLKG-----SLKQQIFIFSSFHTRLVSNIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPS
        MGS AL LLKG     SL  QIFI +S ++  VS+IRIRKCSTAPGIRASLQPPDVPRLAETARISL P EVEEFAPKIRQVVDWFG+LQ VDLQSIEPS
Subjt:  MGSRALPLLKG-----SLKQQIFIFSSFHTRLVSNIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        IRADTEGGNQR+DVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
Subjt:  IRADTEGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

XP_022981070.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucurbita maxima]

6.1e-57

83.45

Show/hide

Query:  MGSRALPLLKGS-----LKQQIFIFSSFHTRLVSNIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPS
        MGS AL LLKG+     L  QIFI +S +T  VSNIRI+KCSTAPGIRASLQPPDVPRLAETARISL P EVEEFAPKIRQVVDWFG+L+ VDLQSIEPS
Subjt:  MGSRALPLLKGS-----LKQQIFIFSSFHTRLVSNIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        IRADTEGGNQR+DVSETFENREA+IGAVPVFDEPYIRVPKVLNKE
Subjt:  IRADTEGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

XP_023521629.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]

2.7e-57

84.83

Show/hide

Query:  MGSRALPLLKG-----SLKQQIFIFSSFHTRLVSNIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPS
        M S AL LLKG     SL  QIFI +S ++  VSNIRIRKCSTAPGIRASLQPPDVPRLAETARISL P EVEEFAPKIRQVVDWFG+LQ VDLQSIEPS
Subjt:  MGSRALPLLKG-----SLKQQIFIFSSFHTRLVSNIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        IRADTEGGNQR+DVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
Subjt:  IRADTEGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CQE8 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.3e-57

82.76

Show/hide

Query:  MGSRALPLLKG-----SLKQQIFIFSSFHTRLVSNIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPS
        MGS+ALPLLKG     SLK+QIFI ++FH+  VSNI IRK STA G+ ASLQPPDVPRLA+TARISLTP +VEEFAPKI QVVDWFG+LQTVDLQSIEPS
Subjt:  MGSRALPLLKG-----SLKQQIFIFSSFHTRLVSNIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        IRADTEGGNQRNDV ETFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  IRADTEGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

A0A5A7T6R5 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.3e-57

82.76

Show/hide

Query:  MGSRALPLLKG-----SLKQQIFIFSSFHTRLVSNIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPS
        MGS+ALPLLKG     SLK+QIFI ++FH+  VSNI IRK STA G+ ASLQPPDVPRLA+TARISLTP +VEEFAPKI QVVDWFG+LQTVDLQSIEPS
Subjt:  MGSRALPLLKG-----SLKQQIFIFSSFHTRLVSNIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        IRADTEGGNQRNDV ETFENREAMIGAVPVFDEPYI+VPKVLNKE
Subjt:  IRADTEGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

A0A6J1CQ90 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

3.1e-59

83.67

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Query:  MGSRALPLLKG-----SLKQQIFIFS--SFHTRLVSNIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIE
        MGS+ALPLLKG     SL++QIFI++   FHT  +S+ +IRKCST P IRASLQPPDVPRLAETARISLTP EVEEFAPKIRQVVDWFG+LQTVDLQSIE
Subjt:  MGSRALPLLKG-----SLKQQIFIFS--SFHTRLVSNIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIE

Query:  PSIRADTEGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        PSIRADTEGGNQRND+SETFENREAMIGAVPVFDEPYIRVPKVLNKE
Subjt:  PSIRADTEGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

A0A6J1FM33 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.3e-57

84.83

Show/hide

Query:  MGSRALPLLKG-----SLKQQIFIFSSFHTRLVSNIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPS
        MGS AL LLKG     SL  QIFI +S ++  VS+IRIRKCSTAPGIRASLQPPDVPRLAETARISL P EVEEFAPKIRQVVDWFG+LQ VDLQSIEPS
Subjt:  MGSRALPLLKG-----SLKQQIFIFSSFHTRLVSNIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        IRADTEGGNQR+DVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
Subjt:  IRADTEGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

A0A6J1IVG1 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

2.9e-57

83.45

Show/hide

Query:  MGSRALPLLKGS-----LKQQIFIFSSFHTRLVSNIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPS
        MGS AL LLKG+     L  QIFI +S +T  VSNIRI+KCSTAPGIRASLQPPDVPRLAETARISL P EVEEFAPKIRQVVDWFG+L+ VDLQSIEPS
Subjt:  MGSRALPLLKGS-----LKQQIFIFSSFHTRLVSNIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPS

Query:  IRADTEGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        IRADTEGGNQR+DVSETFENREA+IGAVPVFDEPYIRVPKVLNKE
Subjt:  IRADTEGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

SwissProt top hits

e value

%identity

Alignment

A2XK57 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.2e-31

68.04

Show/hide

Query:  SLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPSIRADTEGGNQ-RNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        +L+PPD+PRLA  ARISL+P E EEFAPKIRQVVDWFG+LQ VDL+S+EPS+RA T  GN  R D  ETF NR+A+I +VP +D+PYI+VP+VLNKE
Subjt:  SLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPSIRADTEGGNQ-RNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

B9INH0 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.6e-36

60.56

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Query:  MGSRALPLLKG-SLKQQIFIFSSFHTRLVSNIRIRKCST-APGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPSIRA
        MGSRA+ LLKG S  +   +F   H ++     IR+ +T A    +SL+PPDV RLAETARISLTP +VEEF PKIRQV+DW   L +VDL S+EPSIRA
Subjt:  MGSRALPLLKG-SLKQQIFIFSSFHTRLVSNIRIRKCST-APGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPSIRA

Query:  DTEGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        DTEG N R+D  ETFENREA+I AVP +++PY++VPKVLNKE
Subjt:  DTEGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

B9RRX2 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

4.3e-37

59.44

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Query:  MGSRALPLLKGSLKQQIFIFSSFHTRLVSNIRI---RKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPSIR
        MGSRAL LLK +L  +  I    +T++     +   R+ S      +SLQPPDV RLAETARISL   EVEEFAPKIRQV+DWFG+LQ VDL S+EP+IR
Subjt:  MGSRALPLLKGSLKQQIFIFSSFHTRLVSNIRI---RKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPSIR

Query:  ADTEGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        AD+EG N R+DV ETF  REA+I AVP +++PY++VPKVLNKE
Subjt:  ADTEGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

D7STK2 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

2.6e-42

Show/hide

Query:  MGSRALPLLKGSLKQQIFIFSSFHTRLVSNIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPSIRADT
        MGSRAL LLK +  + + +F+S  T   S   IR  + +   R++L PPD+PRLAETARISLTP EVEEFAPKIRQV+DWFG+LQ VDLQSIEPSIRADT
Subjt:  MGSRALPLLKGSLKQQIFIFSSFHTRLVSNIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPSIRADT

Query:  EGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        EG N R+D  ETFENREA+I A+P ++EPY++VPKVLNK+
Subjt:  EGGNQRNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

Q7XZZ1 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial

1.2e-31

68.04

Show/hide

Query:  SLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPSIRADTEGGNQ-RNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
        +L+PPD+PRLA  ARISL+P E EEFAPKIRQVVDWFG+LQ VDL+S+EPS+RA T  GN  R D  ETF NR+A+I +VP +D+PYI+VP+VLNKE
Subjt:  SLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPSIRADTEGGNQ-RNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

Arabidopsis top hits

e value

%identity

Alignment

AT4G32915.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

1.2e-31

54.95

Show/hide

Query:  NIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPSIRADTEGGNQRNDVSETFENREAMIGAVPVFDEP
        N RI +  ++    + LQPPDV RLA+TARISLTP E+EE   KIR+V+DWFG+LQ VD+ S+EP+IRA+ +GGN R D  ETF+NR+++  ++P F++ 
Subjt:  NIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPSIRADTEGGNQRNDVSETFENREAMIGAVPVFDEP

Query:  YIRVPKVLNKE
        Y++VPK+LNKE
Subjt:  YIRVPKVLNKE

Sequences

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CDS sequence

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ATGGCAAATATGGTGATGGGAAGTAGAGCTCTGCCTTTGCTCAAAGGATCGTTAAAGCAACAAATCTTCATCTTTAGCAGTTTTCATACACGGCTTGTTTCTAACATCAG
AATTCGAAAATGTTCGACTGCTCCAGGAATTCGGGCCTCTCTTCAACCTCCCGATGTGCCTCGTTTAGCTGAAACAGCTCGAATCTCACTCACTCCAATTGAGGTTGAAG
AATTTGCTCCTAAAATTCGACAAGTTGTTGACTGGTTTGGGAAGCTCCAGACAGTTGATCTTCAAAGTATTGAGCCTTCCATTAGAGCAGATACTGAAGGTGGCAATCAG
CGGAATGATGTTTCTGAAACATTTGAAAATAGAGAGGCCATGATTGGCGCAGTCCCAGTTTTTGATGAGCCGTATATCAGAGTTCCTAAAGTTCTGAATAAGGAGTAG

mRNA sequence

Show/hide mRNA sequence

TTCTGCCTCACGCTGTCTTCTTCTTCTCTCTTAACGACAACTTCTGCTTCTTCTTCGTCTATCTCAGTCTTTCTAAGTCTTCCTCTTCTTCTTTCACGTCTCACGCCTCT
AATAGTAAACGATATGTAAGACGTGGCGTGAAACATGAAAGATAGAGAAGGCGCGGCGCAATGGCAAATATGGTGATGGGAAGTAGAGCTCTGCCTTTGCTCAAAGGATC
GTTAAAGCAACAAATCTTCATCTTTAGCAGTTTTCATACACGGCTTGTTTCTAACATCAGAATTCGAAAATGTTCGACTGCTCCAGGAATTCGGGCCTCTCTTCAACCTC
CCGATGTGCCTCGTTTAGCTGAAACAGCTCGAATCTCACTCACTCCAATTGAGGTTGAAGAATTTGCTCCTAAAATTCGACAAGTTGTTGACTGGTTTGGGAAGCTCCAG
ACAGTTGATCTTCAAAGTATTGAGCCTTCCATTAGAGCAGATACTGAAGGTGGCAATCAGCGGAATGATGTTTCTGAAACATTTGAAAATAGAGAGGCCATGATTGGCGC
AGTCCCAGTTTTTGATGAGCCGTATATCAGAGTTCCTAAAGTTCTGAATAAGGAGTAGTTCCTGAGTTAAGGGGGATGCTTGGTTATTACCTCACATTTTGGTTGTCACA
TAAGATGTTTAAAGTGTTCGTCGATTTACACTAGACTTGTCTCTTAGGCTACTTCAAGGATGGCTTCGCTGGATCCATTGGCGCAAATTTCCCATATGAATATTCAGAAT
A

Protein sequence

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MANMVMGSRALPLLKGSLKQQIFIFSSFHTRLVSNIRIRKCSTAPGIRASLQPPDVPRLAETARISLTPIEVEEFAPKIRQVVDWFGKLQTVDLQSIEPSIRADTEGGNQ
RNDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

Tan0009617 (gene) of Snake gourd v1 genome