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Tan0009653 (gene) of Snake gourd v1 genome

Gene IDTan0009653
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG04:51254736..51258003
RNA-Seq ExpressionTan0009653
SyntenyTan0009653
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041127.1 gag/pol protein [Cucumis melo var. makuwa]2.1e-3176.53Show/hide
Query:  MTDVLAKKYESLGTTKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTAVREHVLDMMAHFNIVEVNGGAIDEANQFQRFQTLTKAKGKEVEANVS
        M+DVLAKK+ESL T K IMDSLK +FGQP   L HEAIKYIY K+MKEGT+VREHVLDMM HFNI E+NGG IDEAN  QRFQ LTK KGKEVEANV+
Subjt:  MTDVLAKKYESLGTTKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTAVREHVLDMMAHFNIVEVNGGAIDEANQFQRFQTLTKAKGKEVEANVS

KAA0041922.1 gag/pol protein [Cucumis melo var. makuwa]4.6e-3178.57Show/hide
Query:  MTDVLAKKYESLGTTKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTAVREHVLDMMAHFNIVEVNGGAIDEANQFQRFQTLTKAKGKEVEANVS
        M++VLAKK+ESL T K  MDSLK MFGQP   LRHEAIKYIY KRMKEGT+VREHVLDMM HFNI EVNGGAIDEAN  QRFQ L K KGKEVEANV+
Subjt:  MTDVLAKKYESLGTTKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTAVREHVLDMMAHFNIVEVNGGAIDEANQFQRFQTLTKAKGKEVEANVS

KAA0042331.1 gag/pol protein [Cucumis melo var. makuwa]1.4e-3278.57Show/hide
Query:  MTDVLAKKYESLGTTKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTAVREHVLDMMAHFNIVEVNGGAIDEANQFQRFQTLTKAKGKEVEANVS
        M+DVLAKK+ESL TTK IMDSLK MFGQP   LRHEAIKYIY KRMKEGT+++EHVLDMM HFNI EVNGGAID ANQ   FQ LTK KGKEVEANV+
Subjt:  MTDVLAKKYESLGTTKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTAVREHVLDMMAHFNIVEVNGGAIDEANQFQRFQTLTKAKGKEVEANVS

KAA0047422.1 gag/pol protein [Cucumis melo var. makuwa]4.6e-3178.57Show/hide
Query:  MTDVLAKKYESLGTTKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTAVREHVLDMMAHFNIVEVNGGAIDEANQFQRFQTLTKAKGKEVEANVS
        M+DVLAKK+ESL T K IMDSLK MFGQP   LRHEAIKYIY K MKEGT+VREHVLDMM HFNI EVN GAIDEAN  QRFQ LTK K KEVEANV+
Subjt:  MTDVLAKKYESLGTTKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTAVREHVLDMMAHFNIVEVNGGAIDEANQFQRFQTLTKAKGKEVEANVS

TYJ98401.1 gag/pol protein [Cucumis melo var. makuwa]8.4e-3379.59Show/hide
Query:  MTDVLAKKYESLGTTKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTAVREHVLDMMAHFNIVEVNGGAIDEANQFQRFQTLTKAKGKEVEANVS
        M+DVLAKK+ESL T K IMDSLK MFGQP   LRHE IKYIY KRMKEGT+VREHVL+MM HFNI EVNGGAIDEAN  QRFQ LTK KGKEVEANV+
Subjt:  MTDVLAKKYESLGTTKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTAVREHVLDMMAHFNIVEVNGGAIDEANQFQRFQTLTKAKGKEVEANVS

TrEMBL top hitse value%identityAlignment
A0A5A7THM4 Gag/pol protein1.0e-3176.53Show/hide
Query:  MTDVLAKKYESLGTTKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTAVREHVLDMMAHFNIVEVNGGAIDEANQFQRFQTLTKAKGKEVEANVS
        M+DVLAKK+ESL T K IMDSLK +FGQP   L HEAIKYIY K+MKEGT+VREHVLDMM HFNI E+NGG IDEAN  QRFQ LTK KGKEVEANV+
Subjt:  MTDVLAKKYESLGTTKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTAVREHVLDMMAHFNIVEVNGGAIDEANQFQRFQTLTKAKGKEVEANVS

A0A5D3BI96 Gag/pol protein4.1e-3379.59Show/hide
Query:  MTDVLAKKYESLGTTKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTAVREHVLDMMAHFNIVEVNGGAIDEANQFQRFQTLTKAKGKEVEANVS
        M+DVLAKK+ESL T K IMDSLK MFGQP   LRHE IKYIY KRMKEGT+VREHVL+MM HFNI EVNGGAIDEAN  QRFQ LTK KGKEVEANV+
Subjt:  MTDVLAKKYESLGTTKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTAVREHVLDMMAHFNIVEVNGGAIDEANQFQRFQTLTKAKGKEVEANVS

A0A5D3BWP2 Gag/pol protein2.2e-3178.57Show/hide
Query:  MTDVLAKKYESLGTTKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTAVREHVLDMMAHFNIVEVNGGAIDEANQFQRFQTLTKAKGKEVEANVS
        M+DVLAKK+ESL T K IMDSLK MFGQP   LRHEAIKYIY K MKEGT+VREHVLDMM HFNI EVN GAIDEAN  QRFQ LTK K KEVEANV+
Subjt:  MTDVLAKKYESLGTTKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTAVREHVLDMMAHFNIVEVNGGAIDEANQFQRFQTLTKAKGKEVEANVS

A0A5D3CU35 Gag/pol protein6.9e-3378.57Show/hide
Query:  MTDVLAKKYESLGTTKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTAVREHVLDMMAHFNIVEVNGGAIDEANQFQRFQTLTKAKGKEVEANVS
        M+DVLAKK+ESL TTK IMDSLK MFGQP   LRHEAIKYIY KRMKEGT+++EHVLDMM HFNI EVNGGAID ANQ   FQ LTK KGKEVEANV+
Subjt:  MTDVLAKKYESLGTTKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTAVREHVLDMMAHFNIVEVNGGAIDEANQFQRFQTLTKAKGKEVEANVS

A0A5D3D345 Gag/pol protein2.2e-3178.57Show/hide
Query:  MTDVLAKKYESLGTTKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTAVREHVLDMMAHFNIVEVNGGAIDEANQFQRFQTLTKAKGKEVEANVS
        M++VLAKK+ESL T K  MDSLK MFGQP   LRHEAIKYIY KRMKEGT+VREHVLDMM HFNI EVNGGAIDEAN  QRFQ L K KGKEVEANV+
Subjt:  MTDVLAKKYESLGTTKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTAVREHVLDMMAHFNIVEVNGGAIDEANQFQRFQTLTKAKGKEVEANVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGATGTATTGGCTAAGAAATATGAATCCTTGGGCACAACTAAGGCTATCATGGATTCCTTAAAAGAGATGTTCGGGCAACCGTCATCGGTTCTAAGACACGAGGC
TATTAAGTACATTTACAACAAGCGTATGAAGGAAGGGACCGCTGTTAGAGAACATGTCCTGGACATGATGGCCCACTTCAATATTGTTGAAGTAAATGGTGGCGCCATCG
ACGAGGCAAATCAGTTCCAACGTTTTCAAACTCTAACGAAAGCTAAGGGGAAAGAGGTGGAGGCAAATGTTTCGTTCAAAGTTATGTCTATTTGTAGGTTATCCAAAACA
AACAAAAGGTGGTATGTTTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGATGTATTGGCTAAGAAATATGAATCCTTGGGCACAACTAAGGCTATCATGGATTCCTTAAAAGAGATGTTCGGGCAACCGTCATCGGTTCTAAGACACGAGGC
TATTAAGTACATTTACAACAAGCGTATGAAGGAAGGGACCGCTGTTAGAGAACATGTCCTGGACATGATGGCCCACTTCAATATTGTTGAAGTAAATGGTGGCGCCATCG
ACGAGGCAAATCAGTTCCAACGTTTTCAAACTCTAACGAAAGCTAAGGGGAAAGAGGTGGAGGCAAATGTTTCGTTCAAAGTTATGTCTATTTGTAGGTTATCCAAAACA
AACAAAAGGTGGTATGTTTTATGA
Protein sequenceShow/hide protein sequence
MTDVLAKKYESLGTTKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTAVREHVLDMMAHFNIVEVNGGAIDEANQFQRFQTLTKAKGKEVEANVSFKVMSICRLSKT
NKRWYVL