CuGenDBv2

Gene ID	Tan0009684
Organism	Trichosanthes anguina (Snake gourd v1)
Description	photosystem II core complex proteins psbY, chloroplastic
Genome location	LG02:90852180..90852794
RNA-Seq Expression	Tan0009684
Synteny	Tan0009684
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0034219 - carbohydrate transmembrane transport (biological process) GO:0045454 - cell redox homeostasis (biological process) GO:0009523 - photosystem II (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0030145 - manganese ion binding (molecular function) GO:0051119 - sugar transmembrane transporter activity (molecular function)
InterPro domains	IPR009388 - Photosystem II PsbY IPR038760 - Photosystem II PsbY, plant

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6598253.1 Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

4.3e-85

88.24

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Query:  MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIAADGDNRGLAL
        MAA+MATMAVLSVKCTSINST+  N PK IPKPISLLSLQNLPKGLIS K+ E+ NLS FLS TAIAGAVFS LS SDPAFAAQQIA+IAADGDNRG+AL
Subjt:  MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQLNRMRSDKGVIIGLGLGGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALNQLNR
        LLPLIPAIAWVLFNILQPALNQ+NRMRSDKGVIIGLGLGGLTASGFM  APDASASE+AMI ADASSSD RGQLLLFVV PAILWVLYNILQPALNQLNR
Subjt:  LLPLIPAIAWVLFNILQPALNQLNRMRSDKGVIIGLGLGGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALNQLNR

Query:  MRSE
        MRSE
Subjt:  MRSE

KGN62604.2 hypothetical protein Csa_018753 [Cucumis sativus]

7.9e-87

90.2

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Query:  MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIAADGDNRGLAL
        MAA+MATMAVLSVKCTSINSTKT N  K IPKPISLLSLQNLPKGLIS K+ +N NLSTFLS TAIAGAVF+TL  SDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQLNRMRSDKGVIIGLGLGGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALNQLNR
        LLPLIPA+AWVLFNILQPALNQ+NRMRSDKGVIIGLGLGGLTASGFM  APDASASEIAMI ADASSSD RGQLLLFVVAPAILWVLYNILQPALNQLNR
Subjt:  LLPLIPAIAWVLFNILQPALNQLNRMRSDKGVIIGLGLGGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALNQLNR

Query:  MRSE
        MRSE
Subjt:  MRSE

XP_004142959.3 photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus]

7.9e-87

90.2

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Query:  MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIAADGDNRGLAL
        MAA+MATMAVLSVKCTSINSTKT N  K IPKPISLLSLQNLPKGLIS K+ +N NLSTFLS TAIAGAVF+TL  SDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQLNRMRSDKGVIIGLGLGGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALNQLNR
        LLPLIPA+AWVLFNILQPALNQ+NRMRSDKGVIIGLGLGGLTASGFM  APDASASEIAMI ADASSSD RGQLLLFVVAPAILWVLYNILQPALNQLNR
Subjt:  LLPLIPAIAWVLFNILQPALNQLNRMRSDKGVIIGLGLGGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALNQLNR

Query:  MRSE
        MRSE
Subjt:  MRSE

XP_008444395.1 PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis melo]

6.1e-87

90.69

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Query:  MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIAADGDNRGLAL
        MAA+MATMAVLSVKCTSINSTKT N  K IPKPISLLSLQNLPKGLIS K+ EN NLSTFLS TAIAGAVF+TL  SDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQLNRMRSDKGVIIGLGLGGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALNQLNR
        LLPLIPAIAWVLFNILQPALNQ+NRMRSDKGVIIGLGLGGLTASGFM  APDASASEIAMI ADASSSD RGQLLLFVVAPAILWVLYNILQPALNQLNR
Subjt:  LLPLIPAIAWVLFNILQPALNQLNRMRSDKGVIIGLGLGGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALNQLNR

Query:  MRSE
        MRS+
Subjt:  MRSE

XP_038886078.1 LOW QUALITY PROTEIN: photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida]

4.2e-88

90.69

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Query:  MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIAADGDNRGLAL
        MAA+MATMAVLSVKCTSINSTK  N PKPIPKPISLLSLQNLPKGL+S K+ +N NLST LS TAIAGAVFSTLS SDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQLNRMRSDKGVIIGLGLGGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALNQLNR
        LLPLIPAIAWVLFNILQPALNQ+N+MRSDKGVIIGLGLGGLTASGFM  APDASASEIAMI ADASSSD RGQLLLFVVAPAILWVLYNILQPALNQLNR
Subjt:  LLPLIPAIAWVLFNILQPALNQLNRMRSDKGVIIGLGLGGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALNQLNR

Query:  MRSE
        MRSE
Subjt:  MRSE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LKA1 Uncharacterized protein

3.8e-87

90.2

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Query:  MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIAADGDNRGLAL
        MAA+MATMAVLSVKCTSINSTKT N  K IPKPISLLSLQNLPKGLIS K+ +N NLSTFLS TAIAGAVF+TL  SDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQLNRMRSDKGVIIGLGLGGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALNQLNR
        LLPLIPA+AWVLFNILQPALNQ+NRMRSDKGVIIGLGLGGLTASGFM  APDASASEIAMI ADASSSD RGQLLLFVVAPAILWVLYNILQPALNQLNR
Subjt:  LLPLIPAIAWVLFNILQPALNQLNRMRSDKGVIIGLGLGGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALNQLNR

Query:  MRSE
        MRSE
Subjt:  MRSE

A0A1S3B9R1 photosystem II core complex proteins psbY, chloroplastic

2.9e-87

90.69

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Query:  MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIAADGDNRGLAL
        MAA+MATMAVLSVKCTSINSTKT N  K IPKPISLLSLQNLPKGLIS K+ EN NLSTFLS TAIAGAVF+TL  SDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQLNRMRSDKGVIIGLGLGGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALNQLNR
        LLPLIPAIAWVLFNILQPALNQ+NRMRSDKGVIIGLGLGGLTASGFM  APDASASEIAMI ADASSSD RGQLLLFVVAPAILWVLYNILQPALNQLNR
Subjt:  LLPLIPAIAWVLFNILQPALNQLNRMRSDKGVIIGLGLGGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALNQLNR

Query:  MRSE
        MRS+
Subjt:  MRSE

A0A5A7UYJ2 Photosystem II core complex proteins psbY

2.9e-87

90.69

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Query:  MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIAADGDNRGLAL
        MAA+MATMAVLSVKCTSINSTKT N  K IPKPISLLSLQNLPKGLIS K+ EN NLSTFLS TAIAGAVF+TL  SDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQLNRMRSDKGVIIGLGLGGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALNQLNR
        LLPLIPAIAWVLFNILQPALNQ+NRMRSDKGVIIGLGLGGLTASGFM  APDASASEIAMI ADASSSD RGQLLLFVVAPAILWVLYNILQPALNQLNR
Subjt:  LLPLIPAIAWVLFNILQPALNQLNRMRSDKGVIIGLGLGGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALNQLNR

Query:  MRSE
        MRS+
Subjt:  MRSE

A0A6J1BQF3 photosystem II core complex proteins psbY, chloroplastic

1.5e-83

86.76

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Query:  MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIAADGDNRGLAL
        MAA+MATMAVLSVKCTSINS+K    PKPI  PISLLSLQNLPK LIS KA++NPNLSTFLS TAIAGAVFS  S SDPAFAAQQIAEIAA+GDNRGLAL
Subjt:  MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQLNRMRSDKGVIIGLGLGGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALNQLNR
        LLPLIPAIAWVLFNILQPALNQ+NRMRSDKGVIIGLGLGGL AS FM  APDASA+EIAMI ADASSSD RGQLLLFV++PAILWVLYNILQPALNQLNR
Subjt:  LLPLIPAIAWVLFNILQPALNQLNRMRSDKGVIIGLGLGGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALNQLNR

Query:  MRSE
        MRSE
Subjt:  MRSE

F6GVJ9 Uncharacterized protein

4.4e-75

79.9

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Query:  MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIAADGDNRGLAL
        MAA++ATMA+L+ KC SINS K  N+ KP  KPISLLS+QNLPKGL + K++EN NLST L+GTAIAGA+FSTLS  DPA AAQQIAEI ADGDNRGLAL
Subjt:  MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQLNRMRSDKGVIIGLGLGGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALNQLNR
        LLP+IPAIAWVLFNILQPALNQLN+MRS KGVIIGLGLGGL ASGFM+  P ASASEIA + ADA+SSD RGQLLLFVV PAILWVLYNILQPALNQLNR
Subjt:  LLPLIPAIAWVLFNILQPALNQLNRMRSDKGVIIGLGLGGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALNQLNR

Query:  MRSE
        MRSE
Subjt:  MRSE

SwissProt top hits

e value

%identity

Alignment

O49347 Photosystem II core complex proteins psbY, chloroplastic

1.7e-47

56.52

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Query:  MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIA---ADGDNRG
        MAA+MAT    + KC S+N       P P PK    L  Q   K  IS      PN+S  ++ TA+AGAVFS+LS S+PA A QQIA++A   A  DNRG
Subjt:  MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIA---ADGDNRG

Query:  LALLLPLIPAIAWVLFNILQPALNQLNRMRSDKGVIIGLGL-GGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALN
        LALLLP++PAIAWVL+NILQPA+NQ+N+MR  KG+++GLG+ GGL ASG +   P+A A+      A A+SSD RGQLLL VV PA+LWVLYNILQPALN
Subjt:  LALLLPLIPAIAWVLFNILQPALNQLNRMRSDKGVIIGLGL-GGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALN

Query:  QLNRMRS
        Q+N+MRS
Subjt:  QLNRMRS

P80470 Photosystem II core complex proteins psbY, chloroplastic

6.8e-49

57.01

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Query:  MAASMA-TMAVLSVKCTSINSTKTQNI-PKPIPKPISL----LSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIAAD--
        MAA+MA TMAVL+ KC ++N+ KT +  PKP  KPISL    LS   LP G           LS  ++  AIAGAVF+TL   DPAFA QQ+A+IAA+  
Subjt:  MAASMA-TMAVLSVKCTSINSTKTQNI-PKPIPKPISL----LSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIAAD--

Query:  -GDNRGLALLLPLIPAIAWVLFNILQPALNQLNRMRSD-KGVIIGLGLGGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNI
          DNRGLALLLP+IPA+ WVLFNILQPALNQ+N+MR++ K  I+GLGL GL  SG ++  P+A A+   +    A  SD RG LLL VV PAI WVL+NI
Subjt:  -GDNRGLALLLPLIPAIAWVLFNILQPALNQLNRMRSD-KGVIIGLGLGGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNI

Query:  LQPALNQLNRMRSE
        LQPALNQLN+MRS+
Subjt:  LQPALNQLNRMRSE

Arabidopsis top hits

e value

%identity

Alignment

AT1G67740.1 photosystem II BY

1.2e-48

56.52

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Query:  MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIA---ADGDNRG
        MAA+MAT    + KC S+N       P P PK    L  Q   K  IS      PN+S  ++ TA+AGAVFS+LS S+PA A QQIA++A   A  DNRG
Subjt:  MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIA---ADGDNRG

Query:  LALLLPLIPAIAWVLFNILQPALNQLNRMRSDKGVIIGLGL-GGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALN
        LALLLP++PAIAWVL+NILQPA+NQ+N+MR  KG+++GLG+ GGL ASG +   P+A A+      A A+SSD RGQLLL VV PA+LWVLYNILQPALN
Subjt:  LALLLPLIPAIAWVLFNILQPALNQLNRMRSDKGVIIGLGL-GGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALN

Query:  QLNRMRS
        Q+N+MRS
Subjt:  QLNRMRS

Sequences

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CDS sequence

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ATGGCAGCTTCCATGGCTACAATGGCAGTGCTCAGTGTCAAGTGCACAAGCATCAACTCCACCAAAACTCAGAACATCCCAAAGCCAATCCCCAAACCCATCTCCCTCCT
CTCTCTCCAGAACCTTCCAAAAGGACTAATCTCACCAAAAGCTACTGAAAATCCCAACTTATCAACCTTCCTCTCCGGCACCGCCATCGCCGGGGCTGTCTTCTCAACCT
TGAGCTTATCAGATCCTGCTTTTGCAGCCCAACAAATTGCAGAGATAGCCGCCGACGGTGACAACCGTGGTTTGGCCCTTTTGCTACCCCTTATTCCGGCTATAGCATGG
GTTCTGTTCAACATACTACAGCCAGCACTCAACCAGCTCAACAGAATGCGCAGTGACAAGGGGGTGATAATTGGGTTGGGATTAGGGGGGTTGACTGCATCAGGGTTTAT
GATGAACGCACCTGATGCTTCGGCCAGTGAGATCGCCATGATTGCCGCCGATGCCTCTTCAAGTGATGGCAGGGGGCAGCTTCTGCTGTTTGTCGTAGCACCCGCCATTC
TCTGGGTTCTGTACAACATTCTACAGCCAGCTTTGAATCAGCTCAACAGGATGAGATCCGAGTGA

mRNA sequence

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Protein sequence

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MAASMATMAVLSVKCTSINSTKTQNIPKPIPKPISLLSLQNLPKGLISPKATENPNLSTFLSGTAIAGAVFSTLSLSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAW
VLFNILQPALNQLNRMRSDKGVIIGLGLGGLTASGFMMNAPDASASEIAMIAADASSSDGRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE

Tan0009684 (gene) of Snake gourd v1 genome