CuGenDBv2

Gene ID	Tan0009757
Organism	Trichosanthes anguina (Snake gourd v1)
Description	transcription elongation factor B polypeptide 3 isoform X2
Genome location	LG08:68872323..68872868
RNA-Seq Expression	Tan0009757
Synteny	Tan0009757
Gene Ontology terms	GO:0006368 - transcription elongation from RNA polymerase II promoter (biological process) GO:0070449 - elongin complex (cellular component) GO:0016787 - hydrolase activity (molecular function)
InterPro domains	IPR010684 - RNA polymerase II transcription factor SIII, subunit A

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6604740.1 hypothetical protein SDJN03_02057, partial [Cucurbita argyrosperma subsp. sororia]

2.1e-22

45.6

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Query:  MSQVSKVSPLNDDALVNKATDSLKCLEN-----------------VDQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSE----NKGPFTWQQ
        M  V KV P   D  V KA D+L+ L +                 VDQLMHVEKSSEGRDLT +T+ LWK+ YER+FGR+ TN VSE     K  F W Q
Subjt:  MSQVSKVSPLNDDALVNKATDSLKCLEN-----------------VDQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSE----NKGPFTWQQ

Query:  LYEAKMKDIENKRRESENRFIQNYQKEKARKESRQIKFCEVVLSPSNKKHRFEGRTGCKYNTTKSKTKRQVEIREVASLSSK
        LYEAKMKDIE    E+ +R  Q+Y KE ARK+SRQI+ C  V  P++ K  F    G     TK+K  ++ +I  + S   K
Subjt:  LYEAKMKDIENKRRESENRFIQNYQKEKARKESRQIKFCEVVLSPSNKKHRFEGRTGCKYNTTKSKTKRQVEIREVASLSSK

KGN49034.1 hypothetical protein Csa_004217 [Cucumis sativus]

7.6e-25

46.56

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Query:  MSQVSK-VSPLNDDALVNKATDSLKCLENV-----------------DQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSENKGPFTWQQLYE
        MS+VSK + PLN D  VNKA DS+K L +V                 DQL+H+E  S+GRDLT IT  LWK  YERKFG+   + V +N+  F W  LY 
Subjt:  MSQVSK-VSPLNDDALVNKATDSLKCLENV-----------------DQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSENKGPFTWQQLYE

Query:  AKMKDIENKRRESENRFIQNYQKEKARKESRQIKFCEVVLS-PSNKKHRFEGRTGCKYNTTKS----KTKRQVEIREVASLSSKKRSFE
        AKMK++EN+ ++ E+R IQ+YQKEKARK+SRQI FC    S  SNK  +     G K NTTKS    K KR++ + +V++ S+K+ + E
Subjt:  AKMKDIENKRRESENRFIQNYQKEKARKESRQIKFCEVVLS-PSNKKHRFEGRTGCKYNTTKS----KTKRQVEIREVASLSSKKRSFE

XP_022948140.1 transcription elongation factor B polypeptide 3 isoform X1 [Cucurbita moschata]

2.1e-22

45.6

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Query:  MSQVSKVSPLNDDALVNKATDSLKCLEN-----------------VDQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSE----NKGPFTWQQ
        M  V KV P   D  V KA D+L+ L +                 VDQLMHVEKSSEGRDLT +T+ LWK+ YER+FGR+ TN VSE     K  F W Q
Subjt:  MSQVSKVSPLNDDALVNKATDSLKCLEN-----------------VDQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSE----NKGPFTWQQ

Query:  LYEAKMKDIENKRRESENRFIQNYQKEKARKESRQIKFCEVVLSPSNKKHRFEGRTGCKYNTTKSKTKRQVEIREVASLSSK
        LYEAKMKDIE    E+ +R  Q+Y KE ARK+SRQI+ C  V   SNK+       G     TK+K  ++ +I  + S   K
Subjt:  LYEAKMKDIENKRRESENRFIQNYQKEKARKESRQIKFCEVVLSPSNKKHRFEGRTGCKYNTTKSKTKRQVEIREVASLSSK

XP_022948143.1 transcription elongation factor B polypeptide 3 isoform X2 [Cucurbita moschata]

2.1e-22

45.6

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Query:  MSQVSKVSPLNDDALVNKATDSLKCLEN-----------------VDQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSE----NKGPFTWQQ
        M  V KV P   D  V KA D+L+ L +                 VDQLMHVEKSSEGRDLT +T+ LWK+ YER+FGR+ TN VSE     K  F W Q
Subjt:  MSQVSKVSPLNDDALVNKATDSLKCLEN-----------------VDQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSE----NKGPFTWQQ

Query:  LYEAKMKDIENKRRESENRFIQNYQKEKARKESRQIKFCEVVLSPSNKKHRFEGRTGCKYNTTKSKTKRQVEIREVASLSSK
        LYEAKMKDIE    E+ +R  Q+Y KE ARK+SRQI+ C  V  P++ K  F    G     TK+K  ++ +I  + S   K
Subjt:  LYEAKMKDIENKRRESENRFIQNYQKEKARKESRQIKFCEVVLSPSNKKHRFEGRTGCKYNTTKSKTKRQVEIREVASLSSK

XP_022970778.1 transcription elongation factor B polypeptide 3 isoform X2 [Cucurbita maxima]

2.1e-22

45.6

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Query:  MSQVSKVSPLNDDALVNKATDSLKCLEN-----------------VDQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSE----NKGPFTWQQ
        M  V KV P   D  V KA D+L+ L +                 VDQLMHVEKSSEGRDLT +T+ LWK+ YER+FGR+ TN VSE     K  F W Q
Subjt:  MSQVSKVSPLNDDALVNKATDSLKCLEN-----------------VDQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSE----NKGPFTWQQ

Query:  LYEAKMKDIENKRRESENRFIQNYQKEKARKESRQIKFCEVVLSPSNKKHRFEGRTGCKYNTTKSKTKRQVEIREVASLSSK
        LYEAKMKDIE    E+ +R  Q+Y KE ARK+SRQI+ C  V  P++ K  F    G     TK+K  ++ +I  + S   K
Subjt:  LYEAKMKDIENKRRESENRFIQNYQKEKARKESRQIKFCEVVLSPSNKKHRFEGRTGCKYNTTKSKTKRQVEIREVASLSSK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KJR8 Nudix hydrolase domain-containing protein

3.7e-25

46.56

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Query:  MSQVSK-VSPLNDDALVNKATDSLKCLENV-----------------DQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSENKGPFTWQQLYE
        MS+VSK + PLN D  VNKA DS+K L +V                 DQL+H+E  S+GRDLT IT  LWK  YERKFG+   + V +N+  F W  LY 
Subjt:  MSQVSK-VSPLNDDALVNKATDSLKCLENV-----------------DQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSENKGPFTWQQLYE

Query:  AKMKDIENKRRESENRFIQNYQKEKARKESRQIKFCEVVLS-PSNKKHRFEGRTGCKYNTTKS----KTKRQVEIREVASLSSKKRSFE
        AKMK++EN+ ++ E+R IQ+YQKEKARK+SRQI FC    S  SNK  +     G K NTTKS    K KR++ + +V++ S+K+ + E
Subjt:  AKMKDIENKRRESENRFIQNYQKEKARKESRQIKFCEVVLS-PSNKKHRFEGRTGCKYNTTKS----KTKRQVEIREVASLSSKKRSFE

A0A6J1G8K1 transcription elongation factor B polypeptide 3 isoform X2

1.0e-22

45.6

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Query:  MSQVSKVSPLNDDALVNKATDSLKCLEN-----------------VDQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSE----NKGPFTWQQ
        M  V KV P   D  V KA D+L+ L +                 VDQLMHVEKSSEGRDLT +T+ LWK+ YER+FGR+ TN VSE     K  F W Q
Subjt:  MSQVSKVSPLNDDALVNKATDSLKCLEN-----------------VDQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSE----NKGPFTWQQ

Query:  LYEAKMKDIENKRRESENRFIQNYQKEKARKESRQIKFCEVVLSPSNKKHRFEGRTGCKYNTTKSKTKRQVEIREVASLSSK
        LYEAKMKDIE    E+ +R  Q+Y KE ARK+SRQI+ C  V  P++ K  F    G     TK+K  ++ +I  + S   K
Subjt:  LYEAKMKDIENKRRESENRFIQNYQKEKARKESRQIKFCEVVLSPSNKKHRFEGRTGCKYNTTKSKTKRQVEIREVASLSSK

A0A6J1G8W9 transcription elongation factor B polypeptide 3 isoform X1

1.0e-22

45.6

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Query:  MSQVSKVSPLNDDALVNKATDSLKCLEN-----------------VDQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSE----NKGPFTWQQ
        M  V KV P   D  V KA D+L+ L +                 VDQLMHVEKSSEGRDLT +T+ LWK+ YER+FGR+ TN VSE     K  F W Q
Subjt:  MSQVSKVSPLNDDALVNKATDSLKCLEN-----------------VDQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSE----NKGPFTWQQ

Query:  LYEAKMKDIENKRRESENRFIQNYQKEKARKESRQIKFCEVVLSPSNKKHRFEGRTGCKYNTTKSKTKRQVEIREVASLSSK
        LYEAKMKDIE    E+ +R  Q+Y KE ARK+SRQI+ C  V   SNK+       G     TK+K  ++ +I  + S   K
Subjt:  LYEAKMKDIENKRRESENRFIQNYQKEKARKESRQIKFCEVVLSPSNKKHRFEGRTGCKYNTTKSKTKRQVEIREVASLSSK

A0A6J1I1I3 transcription elongation factor B polypeptide 3 isoform X1

1.0e-22

45.6

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Query:  MSQVSKVSPLNDDALVNKATDSLKCLEN-----------------VDQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSE----NKGPFTWQQ
        M  V KV P   D  V KA D+L+ L +                 VDQLMHVEKSSEGRDLT +T+ LWK+ YER+FGR+ TN VSE     K  F W Q
Subjt:  MSQVSKVSPLNDDALVNKATDSLKCLEN-----------------VDQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSE----NKGPFTWQQ

Query:  LYEAKMKDIENKRRESENRFIQNYQKEKARKESRQIKFCEVVLSPSNKKHRFEGRTGCKYNTTKSKTKRQVEIREVASLSSK
        LYEAKMKDIE    E+ +R  Q+Y KE ARK+SRQI+ C  V   SNK+       G     TK+K  ++ +I  + S   K
Subjt:  LYEAKMKDIENKRRESENRFIQNYQKEKARKESRQIKFCEVVLSPSNKKHRFEGRTGCKYNTTKSKTKRQVEIREVASLSSK

A0A6J1I4W9 transcription elongation factor B polypeptide 3 isoform X2

1.0e-22

45.6

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Query:  MSQVSKVSPLNDDALVNKATDSLKCLEN-----------------VDQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSE----NKGPFTWQQ
        M  V KV P   D  V KA D+L+ L +                 VDQLMHVEKSSEGRDLT +T+ LWK+ YER+FGR+ TN VSE     K  F W Q
Subjt:  MSQVSKVSPLNDDALVNKATDSLKCLEN-----------------VDQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSE----NKGPFTWQQ

Query:  LYEAKMKDIENKRRESENRFIQNYQKEKARKESRQIKFCEVVLSPSNKKHRFEGRTGCKYNTTKSKTKRQVEIREVASLSSK
        LYEAKMKDIE    E+ +R  Q+Y KE ARK+SRQI+ C  V  P++ K  F    G     TK+K  ++ +I  + S   K
Subjt:  LYEAKMKDIENKRRESENRFIQNYQKEKARKESRQIKFCEVVLSPSNKKHRFEGRTGCKYNTTKSKTKRQVEIREVASLSSK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G42780.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).

4.8e-09

30.37

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Query:  QVSKVSPLNDDALVNKATDSLK-----------CLENV------DQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSE----NK-GPFTWQQL
        +++K  P   D  V KA D++K            LE +      +QL H+E +++  DL+ IT+  WK  Y++ +G +    + E    NK   F W+ L
Subjt:  QVSKVSPLNDDALVNKATDSLK-----------CLENV------DQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSE----NK-GPFTWQQL

Query:  YEAKMKDIENKRRESENRFIQNYQKEKARKESRQIKFCEVVLSPSNKKHRFEGRTGCKYNT--TKSKTKRQVEI-----REVASLSSKKRS
        YE K+  ++ K +E   R  + Y+ E  RK+SRQ K C     PS  K  F G +   YN    KS   ++ +I     +EV +L++ KR+
Subjt:  YEAKMKDIENKRRESENRFIQNYQKEKARKESRQIKFCEVVLSPSNKKHRFEGRTGCKYNT--TKSKTKRQVEI-----REVASLSSKKRS

AT2G42780.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684).

4.8e-09

30.37

Show/hide

Query:  QVSKVSPLNDDALVNKATDSLK-----------CLENV------DQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSE----NK-GPFTWQQL
        +++K  P   D  V KA D++K            LE +      +QL H+E +++  DL+ IT+  WK  Y++ +G +    + E    NK   F W+ L
Subjt:  QVSKVSPLNDDALVNKATDSLK-----------CLENV------DQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSE----NK-GPFTWQQL

Query:  YEAKMKDIENKRRESENRFIQNYQKEKARKESRQIKFCEVVLSPSNKKHRFEGRTGCKYNT--TKSKTKRQVEI-----REVASLSSKKRS
        YE K+  ++ K +E   R  + Y+ E  RK+SRQ K C     PS  K  F G +   YN    KS   ++ +I     +EV +L++ KR+
Subjt:  YEAKMKDIENKRRESENRFIQNYQKEKARKESRQIKFCEVVLSPSNKKHRFEGRTGCKYNT--TKSKTKRQVEI-----REVASLSSKKRS

Sequences

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CDS sequence

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ATGTCTCAAGTAAGTAAAGTAAGTCCGTTGAATGATGATGCTTTGGTTAACAAAGCTACAGATAGTTTGAAGTGTCTTGAAAACGTTGACCAATTGATGCATGTGGAGAA
AAGTTCTGAAGGAAGAGATCTCACTTCCATAACTGAAACATTGTGGAAAGAACAATACGAAAGAAAGTTTGGTAGAAAATATACTAATTATGTAAGTGAGAACAAAGGGC
CATTTACATGGCAGCAGTTATATGAGGCCAAAATGAAGGATATAGAAAACAAGAGAAGGGAAAGTGAGAATCGATTTATACAAAACTACCAAAAGGAAAAAGCTCGAAAA
GAAAGTCGTCAAATAAAGTTTTGTGAGGTAGTTTTGTCTCCAAGCAATAAGAAGCATAGATTTGAAGGAAGAACTGGATGCAAATATAACACTACCAAGAGTAAGACAAA
AAGACAAGTTGAAATTCGTGAAGTTGCCTCTTTAAGCAGTAAGAAACGAAGTTTTGAAGGAGCAACTACCAATAATAATAAGAACAAGCAGCTAAAGAAGACATAG

mRNA sequence

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Protein sequence

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MSQVSKVSPLNDDALVNKATDSLKCLENVDQLMHVEKSSEGRDLTSITETLWKEQYERKFGRKYTNYVSENKGPFTWQQLYEAKMKDIENKRRESENRFIQNYQKEKARK
ESRQIKFCEVVLSPSNKKHRFEGRTGCKYNTTKSKTKRQVEIREVASLSSKKRSFEGATTNNNKNKQLKKT

Tan0009757 (gene) of Snake gourd v1 genome