CuGenDBv2

Gene ID	Tan0009777
Organism	Trichosanthes anguina (Snake gourd v1)
Description	translation initiation factor IF-1, chloroplastic
Genome location	LG01:109149640..109152545
RNA-Seq Expression	Tan0009777
Synteny	Tan0009777
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0005829 - cytosol (cellular component) GO:0009507 - chloroplast (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003743 - translation initiation factor activity (molecular function) GO:0043022 - ribosome binding (molecular function)
InterPro domains	IPR004368 - Translation initiation factor IF-1 IPR012340 - Nucleic acid-binding, OB-fold

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0064332.1 translation initiation factor IF-1 [Cucumis melo var. makuwa]

8.5e-40

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Query:  MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS
        MSSTNLLQFPLLQ HFRPPSTLLFP +KSH SVVSI FP+SQFLH PSH P  FALMAKSPK+D+SEQK SHEGSV+ESLPNGMFRVRLDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS

KAG6607876.1 Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

1.4e-39

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Query:  MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS
        MSSTNLLQFPLLQ   RPPST LFPAIKSH SVVSIPFPSSQFLHNPSHG ASF  MAKSPKS+SSEQK+SHEGSVIESLPNGMFRV+LDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS

XP_008452461.1 PREDICTED: translation initiation factor IF-1, chloroplastic [Cucumis melo]

2.2e-40

81.13

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Query:  MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS
        MSSTNLLQFPLLQ HFRPPSTLLFP +KSH SVVSI FP+SQFLH PSH P  FALMAKSPK+D+SEQK SHEGSV+ESLPNGMFRVRLDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS

Query:  DAHTQV
          ++ +
Subjt:  DAHTQV

XP_022940969.1 translation initiation factor IF-1, chloroplastic-like [Cucurbita moschata]

5.0e-40

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Query:  MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS
        MSSTNLLQFPLLQ   RPPST LFPAIKSH SVVSIPFPSSQFLHNPSHGP SF  MAKSPKS+SSEQK+SHEGSVIESLPNGMFRV+LDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS

XP_038899010.1 translation initiation factor IF-1, chloroplastic [Benincasa hispida]

6.5e-40

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Query:  MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS
        MSST LLQFPLLQ HFRPPSTL FPA+KSH SVVSI FP++QFLHNPSH  A F LMAKSPK+D+SEQKWSHEGSV+ESLPNGMFRVRLDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BT96 translation initiation factor IF-1, chloroplastic

1.1e-40

81.13

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Query:  MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS
        MSSTNLLQFPLLQ HFRPPSTLLFP +KSH SVVSI FP+SQFLH PSH P  FALMAKSPK+D+SEQK SHEGSV+ESLPNGMFRVRLDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS

Query:  DAHTQV
          ++ +
Subjt:  DAHTQV

A0A5A7V7J3 Translation initiation factor IF-1

4.1e-40

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Query:  MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS
        MSSTNLLQFPLLQ HFRPPSTLLFP +KSH SVVSI FP+SQFLH PSH P  FALMAKSPK+D+SEQK SHEGSV+ESLPNGMFRVRLDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS

A0A6J1FLU6 translation initiation factor IF-1, chloroplastic-like

2.4e-40

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Query:  MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS
        MSSTNLLQFPLLQ   RPPST LFPAIKSH SVVSIPFPSSQFLHNPSHGP SF  MAKSPKS+SSEQK+SHEGSVIESLPNGMFRV+LDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS

A0A6J1IP00 uncharacterized protein LOC111476947

4.5e-39

84.85

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Query:  MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYI
        MSSTNLL+FPLL  H RPPSTL FPAIKSH SVVSI FP+SQFL NPSHGPA FALMAK PKSDS+EQKWS+EGS++ESLPNGMFRVRLDNEDLILGYI
Subjt:  MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYI

A0A6J1IW62 translation initiation factor IF-1, chloroplastic-like

2.7e-39

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Query:  MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS
        MSSTNLLQFPLLQ   RPP T LFP  KSH SVVSIPFPSSQFLHNPSHGPASFA MAKSPKS+SSEQK+SHEGSVIESLPNGMFRV+LDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS

SwissProt top hits

e value

%identity

Alignment

A0A370 Translation initiation factor IF-1, chloroplastic

1.1e-10

85.29

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Query:  EQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS
        EQKW+HEG + ESLPNGMFRVRLDNEDLILGY+S
Subjt:  EQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS

A6MM71 Translation initiation factor IF-1, chloroplastic

2.5e-10

85.29

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Query:  EQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS
        EQKW HEG + ESLPNGMFRVRLDNEDLILGY+S
Subjt:  EQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS

P69041 Translation initiation factor IF-1, chloroplastic

2.5e-10

85.29

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Query:  EQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS
        EQKW HEG + ESLPNGMFRVRLDNEDLILGY+S
Subjt:  EQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS

Q94KR7 Translation initiation factor IF-1, chloroplastic

2.0e-12

51.55

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Query:  LQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSS-QFLHNPSHGPASFALMAKS-PKSD-SSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS
        L  P+L P +    T   P+      +   PF  +  FL  P   PA+ AL A S  K D S EQKW HEG ++ESLPNGMFRVRLDNEDLILGYIS
Subjt:  LQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSS-QFLHNPSHGPASFALMAKS-PKSD-SSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS

Q95GN3 Translation initiation factor IF-1, chloroplastic

1.9e-10

88.24

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Query:  EQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS
        EQKW HEG + ESLPNGMFRVRLDNEDLILGYIS
Subjt:  EQKWSHEGSVIESLPNGMFRVRLDNEDLILGYIS

Arabidopsis top hits

e value

%identity

Alignment

AT4G11175.1 Nucleic acid-binding, OB-fold-like protein

9.5e-05

41.76

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Query:  LLQPHFRPPSTLLFPAIK--SHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYI
        LL   FR  + +L P I   +  SVV+I         +   G A+ +  AK P+      K   EG V ESLPNGMFRV L+N D ILGYI
Subjt:  LLQPHFRPPSTLLFPAIK--SHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYI

Sequences

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CDS sequence

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ATGTCGAGCACAAATCTCCTCCAATTCCCTCTCCTTCAACCCCATTTCCGGCCACCGTCCACTCTCCTTTTTCCGGCCATCAAATCGCACCAATCCGTCGTCTCAATACC
TTTTCCGAGCTCTCAATTCCTCCACAACCCTTCCCATGGTCCGGCGAGCTTCGCTCTCATGGCAAAGTCTCCAAAAAGCGACAGCTCGGAGCAGAAATGGAGCCACGAAG
GCTCGGTCATCGAGTCTCTTCCCAACGGGATGTTCAGAGTTCGATTGGATAATGAGGACCTCATTCTTGGCTACATATCGGATGCTCATACTCAAGTTCTTTGA

mRNA sequence

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ATCCCCTTCTCCATCCGAGTTCCTTTCGCTCACTCTCTTCCTCAGCCAAAATCCAGAAAACTGAAGGTGGTGCAAAAATGTCGAGCACAAATCTCCTCCAATTCCCTCTC
CTTCAACCCCATTTCCGGCCACCGTCCACTCTCCTTTTTCCGGCCATCAAATCGCACCAATCCGTCGTCTCAATACCTTTTCCGAGCTCTCAATTCCTCCACAACCCTTC
CCATGGTCCGGCGAGCTTCGCTCTCATGGCAAAGTCTCCAAAAAGCGACAGCTCGGAGCAGAAATGGAGCCACGAAGGCTCGGTCATCGAGTCTCTTCCCAACGGGATGT
TCAGAGTTCGATTGGATAATGAGGACCTCATTCTTGGCTACATATCGGATGCTCATACTCAAGTTCTTTGATTCGTCCCCAATAGAGCTCAAAAAGAATTATTGCAGAGA
GGTGAATGTGATGCTCATGCCCTGTCCCACCTACTTTTATAGGAACATGAATGCGACCAAAATATGTCTTCAACAACTCATAATTCAGACCTACAGGTAATTAAGTTCAA
CAACTTTGCACCCAAAACACATATTTAATAACTCTCCAAACTACTTAATTTGTCATGCTAAACAATTTCAAGTTTAATAACTCATACTCTTTTTTCAACAAGAGCATAGC
TCAACTGGCATCAAGTATTGG

Protein sequence

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MSSTNLLQFPLLQPHFRPPSTLLFPAIKSHQSVVSIPFPSSQFLHNPSHGPASFALMAKSPKSDSSEQKWSHEGSVIESLPNGMFRVRLDNEDLILGYISDAHTQVL

Tan0009777 (gene) of Snake gourd v1 genome