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Tan0009807 (gene) of Snake gourd v1 genome

Gene IDTan0009807
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTranscription elongation factor 1 homolog
Genome locationLG01:8162558..8164340
RNA-Seq ExpressionTan0009807
SyntenyTan0009807
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0006414 - translational elongation (biological process)
GO:0008023 - transcription elongation factor complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007808 - Transcription elongation factor 1
IPR038567 - Transcription elongation factor 1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1222011.1 hypothetical protein CJ030_MR2G018503 [Morella rubra]2.1e-4295.45Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDDGA
        MGKRKSR+KPPPKKRMDKLDTVFSCPFCNHGTS+ECRIDMKNLIGEASCRICQE FSTTITALTE IDIYSEWIDECERVNNLEDDGA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDDGA

XP_004146241.1 transcription elongation factor 1 homolog [Cucumis sativus]2.7e-4296.59Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDDGA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTITAL+EAIDIYSEWIDECERVNNLEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDDGA

XP_010090451.1 transcription elongation factor 1 homolog isoform X1 [Morus notabilis]7.2e-4397.73Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDDGA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTITALTE IDIYSEWIDECERVNNLEDDGA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDDGA

XP_022142747.1 transcription elongation factor 1 homolog [Momordica charantia]2.7e-4296.59Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDDGA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTE IDIYSEWIDECERVNNLE+D A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDDGA

XP_038896920.1 transcription elongation factor 1 homolog [Benincasa hispida]1.3e-4476.98Show/hide
Query:  MSINTSPPQILAPNSSNRPARRFHQRTIIPPNLIK---MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITA
        MSIN +        SS RPA +   RT I P  I    MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRID+KNLIGEASCRICQE FSTTITA
Subjt:  MSINTSPPQILAPNSSNRPARRFHQRTIIPPNLIK---MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITA

Query:  LTEAIDIYSEWIDECERVNNLEDDGA
        L+EAID+YSEWIDECERVNNLEDD A
Subjt:  LTEAIDIYSEWIDECERVNNLEDDGA

TrEMBL top hitse value%identityAlignment
A0A0A0LAG5 Transcription elongation factor 1 homolog1.3e-4296.59Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDDGA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTITAL+EAIDIYSEWIDECERVNNLEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDDGA

A0A1S3C2B7 Transcription elongation factor 1 homolog1.3e-4296.59Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDDGA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTITAL+EAIDIYSEWIDECERVNNLEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDDGA

A0A6A1W9X5 Transcription elongation factor 1 homolog1.0e-4295.45Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDDGA
        MGKRKSR+KPPPKKRMDKLDTVFSCPFCNHGTS+ECRIDMKNLIGEASCRICQE FSTTITALTE IDIYSEWIDECERVNNLEDDGA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDDGA

A0A6J1CNR1 Transcription elongation factor 1 homolog1.3e-4296.59Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDDGA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTE IDIYSEWIDECERVNNLE+D A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDDGA

W9R774 Transcription elongation factor 1 homolog3.5e-4397.73Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDDGA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTITALTE IDIYSEWIDECERVNNLEDDGA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDDGA

SwissProt top hitse value%identityAlignment
A4IFR3 Transcription elongation factor 1 homolog1.5e-1952.44Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVN
        MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T IT L+E +D+YS+WID CE  N
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVN

P36053 Transcription elongation factor 11.5e-1950Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNN
        MGKRK   + P K+ + KLDT F+C FCNH  SV C +D KN IG  SC+IC + F T I +L++ +D+YS+W D  E VN+
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNN

P60002 Transcription elongation factor 1 homolog1.5e-1952.44Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVN
        MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T IT L+E +D+YS+WID CE  N
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVN

Q8LEF3 Transcription elongation factor 1 homolog6.6e-3986.05Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDD
        MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+E FSTTITALTEAIDIYSEWIDECERVN  EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDD

Q8LHP0 Transcription elongation factor 1 homolog2.9e-4291.86Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDD
        MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQE FSTT+ ALTE IDIYSEWIDECERVNN+EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDD

Arabidopsis top hitse value%identityAlignment
AT5G46030.1 unknown protein4.7e-4086.05Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDD
        MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+E FSTTITALTEAIDIYSEWIDECERVN  EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWIDECERVNNLEDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTATAAATACCAGCCCCCCTCAAATTCTTGCTCCCAATTCTTCAAATCGACCAGCGAGACGATTTCATCAACGAACGATAATCCCTCCCAATTTGATCAAGATGGG
GAAAAGAAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGCCCCTTCTGCAATCATGGGACCAGTGTGGAATGTCGCATTG
ATATGAAGAACCTGATTGGGGAAGCTTCCTGTAGGATTTGCCAAGAAGGCTTTAGCACAACCATTACAGCCTTGACTGAGGCAATAGACATATATAGTGAATGGATCGAT
GAATGTGAGCGGGTCAACAACCTTGAAGACGATGGTGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTATAAATACCAGCCCCCCTCAAATTCTTGCTCCCAATTCTTCAAATCGACCAGCGAGACGATTTCATCAACGAACGATAATCCCTCCCAATTTGATCAAGATGGG
GAAAAGAAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGCCCCTTCTGCAATCATGGGACCAGTGTGGAATGTCGCATTG
ATATGAAGAACCTGATTGGGGAAGCTTCCTGTAGGATTTGCCAAGAAGGCTTTAGCACAACCATTACAGCCTTGACTGAGGCAATAGACATATATAGTGAATGGATCGAT
GAATGTGAGCGGGTCAACAACCTTGAAGACGATGGTGCCTAG
Protein sequenceShow/hide protein sequence
MSINTSPPQILAPNSSNRPARRFHQRTIIPPNLIKMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEAIDIYSEWID
ECERVNNLEDDGA