CuGenDBv2

Gene ID	Tan0009809
Organism	Trichosanthes anguina (Snake gourd v1)
Description	60S ribosomal protein L30
Genome location	LG09:61460317..61462047
RNA-Seq Expression	Tan0009809
Synteny	Tan0009809
Gene Ontology terms	GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000231 - Ribosomal protein L30e IPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45 IPR022991 - Ribosomal protein L30e, conserved site IPR029064 - 50S ribosomal protein L30e-like IPR039109 - Ribosomal protein L30/YlxQ

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAF8039682.1 hypothetical protein BT93_B2023 [Corymbia citriodora subsp. variegata]

1.2e-55

98.2

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKL+IIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPGE
        DSDIIKSMPGE
Subjt:  DSDIIKSMPGE

KAG6590249.1 60S ribosomal protein L30, partial [Cucurbita argyrosperma subsp. sororia]

8.8e-56

99.1

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPGE
        DSDIIKS+PGE
Subjt:  DSDIIKSMPGE

XP_022157366.1 60S ribosomal protein L30 [Momordica charantia]

1.2e-55

99.1

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPGE
        DSDIIKS+PGE
Subjt:  DSDIIKSMPGE

XP_022960585.1 60S ribosomal protein L30-like [Cucurbita moschata]

3.0e-56

99.11

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPGES
        DSDIIKS+PGES
Subjt:  DSDIIKSMPGES

XP_038878626.1 60S ribosomal protein L30 [Benincasa hispida]

1.4e-56

100

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPGES
        DSDIIKSMPGES
Subjt:  DSDIIKSMPGES

TrEMBL top hits

e value

%identity

Alignment

A0A1U8ENE7 60S ribosomal protein L30

9.5e-56

98.2

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPGE
        DSDIIKSMPG+
Subjt:  DSDIIKSMPGE

A0A3Q7J0N1 Ribosomal_L7Ae domain-containing protein

9.5e-56

98.2

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPGE
        DSDIIKSMPG+
Subjt:  DSDIIKSMPGE

A0A6J1DXV1 60S ribosomal protein L30

5.6e-56

99.1

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPGE
        DSDIIKS+PGE
Subjt:  DSDIIKSMPGE

A0A6J1H9H7 60S ribosomal protein L30-like

1.5e-56

99.11

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPGES
        DSDIIKS+PGES
Subjt:  DSDIIKSMPGES

A0A6J1JJ11 60S ribosomal protein L30-like

1.5e-56

99.11

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPGES
        DSDIIKS+PGES
Subjt:  DSDIIKSMPGES

SwissProt top hits

e value

%identity

Alignment

O48558 60S ribosomal protein L30

2.6e-50

84.68

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVA KKTKK+ ++INN+L LVMKSGKYTLGYKTVL+TLRNSK KL+IIANNCPPLRKSEIEYYAMLAKV VHH++G+NVDLGTACGKY+RVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPGE
        DSDIIK+ PGE
Subjt:  DSDIIKSMPGE

O49884 60S ribosomal protein L30

1.9e-56

93.69

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLK+LR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPGE
        DSDIIK++PG+
Subjt:  DSDIIKSMPGE

Q8VZ19 60S ribosomal protein L30-2

2.6e-50

83.78

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MV  KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SKGKLI+I+ NCPPLR+SEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPGE
        DSDIIKS+PG+
Subjt:  DSDIIKSMPGE

Q9C8F7 Putative 60S ribosomal protein L30-1

8.9e-51

84.68

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKGKLI+I++NCPPLR+SEIEYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPGE
        DSDIIKS+PG+
Subjt:  DSDIIKSMPGE

Q9M5M6 60S ribosomal protein L30

1.5e-53

90.09

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESIN+RLALVMKSGK+TLGYKTVL++LR++KGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RVCCLSIID G
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPGE
        DSDIIKS+PG+
Subjt:  DSDIIKSMPGE

Arabidopsis top hits

e value

%identity

Alignment

AT1G36240.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

6.3e-52

84.68

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKGKLI+I++NCPPLR+SEIEYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPGE
        DSDIIKS+PG+
Subjt:  DSDIIKSMPGE

AT1G77940.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

1.8e-51

83.78

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MV  KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SKGKLI+I+ NCPPLR+SEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPGE
        DSDIIKS+PG+
Subjt:  DSDIIKSMPGE

AT3G18740.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

2.0e-50

81.98

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Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVA KK KK+HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKGKLI+I++NCPPLR+SEIEYYAMLAKVGVH YNG+NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPGE
        DSDIIK++PG+
Subjt:  DSDIIKSMPGE

Sequences

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CDS sequence

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ATGGTGGCCGCCAAGAAGACGAAGAAGACTCATGAGAGCATCAACAACAGGCTCGCTCTCGTCATGAAGAGTGGGAAATATACTTTGGGATACAAAACCGTTCTCAAGAC
TTTGAGGAACTCTAAAGGTAAGCTAATCATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCAGAGATCGAGTATTATGCGATGTTGGCAAAGGTTGGAGTTCACCATT
ACAACGGAAGCAATGTAGATCTTGGAACTGCTTGTGGCAAGTATTACAGAGTATGCTGCCTCAGCATTATCGATCCCGGCGATTCTGATATCATCAAGAGCATGCCTGGA
GAAAGCTAG

mRNA sequence

Show/hide mRNA sequence

TAGGGTTTGTTTTTGCTTATCCCTACCGTGGGCGTCGACCTTCCTCCATCTTCCATCCATCATGGTGGCCGCCAAGAAGACGAAGAAGACTCATGAGAGCATCAACAACA
GGCTCGCTCTCGTCATGAAGAGTGGGAAATATACTTTGGGATACAAAACCGTTCTCAAGACTTTGAGGAACTCTAAAGGTAAGCTAATCATCATTGCCAACAACTGCCCT
CCACTCCGAAAGTCAGAGATCGAGTATTATGCGATGTTGGCAAAGGTTGGAGTTCACCATTACAACGGAAGCAATGTAGATCTTGGAACTGCTTGTGGCAAGTATTACAG
AGTATGCTGCCTCAGCATTATCGATCCCGGCGATTCTGATATCATCAAGAGCATGCCTGGAGAAAGCTAGGTTGCAACTTCCTCTCAGATCATAGATTTTTGTTTCAGAG
TTTCTTTTTAATTTTGGGTTGGACGCAGTGACGTTCCGCTTGTGAGGCATGTTATTATCGATTGAATGGTTTCATTATAAACTTTTTATGTATGCCAGATCTTATTCCAG
AAAACTTCTGATATTATTTTGATGCTCTACATTACCTCAACTGGTTCTTAAGGAGCATTTTACCTCCAACTATTGATTTGAGTATGATTTTGCATGAATCGTTCTTTGTT
TAAGATGGGTTAGGCATTGATGTCGTTGGTTCAAA

Protein sequence

Show/hide protein sequence

MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPG
ES

Tan0009809 (gene) of Snake gourd v1 genome