; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0009847 (gene) of Snake gourd v1 genome

Gene IDTan0009847
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG06:63646997..63649027
RNA-Seq ExpressionTan0009847
SyntenyTan0009847
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043405.1 hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa]2.2e-2637.55Show/hide
Query:  RNNEISTNFAKSKISKDEGSATSPILRYVPLSRRKKGESPFAECAKSL--------------AKLLKEGYTIPASRKELGYKSPESVCIIRKEKTKVADA
        R  E ST+  KS I  DE ++   ILRYVPLSRR+KGESPF +  + L               KLL+EG+ IP SRK  GYKSPE + IIRK K KV D+
Subjt:  RNNEISTNFAKSKISKDEGSATSPILRYVPLSRRKKGESPFAECAKSL--------------AKLLKEGYTIPASRKELGYKSPESVCIIRKEKTKVADA

Query:  NHITVEEVDDSDEKENVTRKTYVFSRVGPLVARPSALQRLGTIQVEEERSPPISGSTRASTLMRIRMPTETEGNVLSTLIPDFVRPSVRQRLGVSAAERE
        NHITV EVD  +EKE  +++   F ++ P V R +  +RL   + E +     S   + S L R+ M  + E      L     RPS  +RL V+  +  
Subjt:  NHITVEEVDDSDEKENVTRKTYVFSRVGPLVARPSALQRLGTIQVEEERSPPISGSTRASTLMRIRMPTETEGNVLSTLIPDFVRPSVRQRLGVSAAERE

Query:  CMTSTPVVVR---PSILQRLGAPVKEKKNVPSTSDVR
             P+  R        + G+ +  KK +P+ S V+
Subjt:  CMTSTPVVVR---PSILQRLGAPVKEKKNVPSTSDVR

KAA0047672.1 uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa]2.7e-2438.69Show/hide
Query:  NEISTNFAKSKISKDEGSATSPILRYVPLSRRKKGESPFAECAKSL----AKLLKEGYTI---PASRKELGYKSPESVCIIRKEKTKVADANHITVEEVD
        NE ST+ AKS I  +E ++  PILRYVPLSR KKGESPF E  + L     ++LKE +TI     ++K LGYKSPE + I RK K KV D+NHITV+EVD
Subjt:  NEISTNFAKSKISKDEGSATSPILRYVPLSRRKKGESPFAECAKSL----AKLLKEGYTI---PASRKELGYKSPESVCIIRKEKTKVADANHITVEEVD

Query:  DSDEKENVTRKTYVFSRVGPLVARPSALQRLGTIQVEEERSPPISGSTRASTLMRIRMPTETEGNVLSTLIPDFVRPSVRQRLGVSAAERECMTSTPVV
          + KE  +++T  F R+ P VAR    +RL   + + +     S   R S   R+ +  + E  +    +    +PS  +RL ++  +       P++
Subjt:  DSDEKENVTRKTYVFSRVGPLVARPSALQRLGTIQVEEERSPPISGSTRASTLMRIRMPTETEGNVLSTLIPDFVRPSVRQRLGVSAAERECMTSTPVV

KAA0055957.1 uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]8.4e-2636.13Show/hide
Query:  NEISTNFAKSKISKDEGSATSPILRYVPLSRRKKGESPFAECAKSL--------------------------------------------AKLLKEGYTI
        +E STN AKS I  DE ++  PILRYVPLSRRKKGESPF E  + L                                             KLL+EG+ I
Subjt:  NEISTNFAKSKISKDEGSATSPILRYVPLSRRKKGESPFAECAKSL--------------------------------------------AKLLKEGYTI

Query:  PASRKELGYKSPESVCIIRKEKTKVADANHITVEEVDDSDEKENVTRKTYVFSRVGPLVARPSALQRLGTIQVEEERSPPISGSTRASTLMRIRMPTETE
        P SRK LGYKSPE + I RK K KV D NHITV+EVD  +EKE   ++T  F R+ P VAR    +RL   + + +     S   R S   R+ +  + E
Subjt:  PASRKELGYKSPESVCIIRKEKTKVADANHITVEEVDDSDEKENVTRKTYVFSRVGPLVARPSALQRLGTIQVEEERSPPISGSTRASTLMRIRMPTETE

Query:  GNVLSTLIPDFVRPSVRQRLGVSAAERECMTSTPVVVR
          +  T +    +PS  +RL ++  +       P++ R
Subjt:  GNVLSTLIPDFVRPSVRQRLGVSAAERECMTSTPVVVR

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.4e-2627.76Show/hide
Query:  KKNNKRTEDENEGWTVVTRCKKRQQSYAQKESRLFQHHKRKSKSQKKKRKQVTKKRVYAVREDETLFYPRQLVTLEEFFP---------KNSLIACHVTG
        ++  +  E+++EGWTVVTR KKR+ +  QKESRL+ +++R +K+QK K+K+ T+K      +D+     +++VTL +FFP         +N  +    + 
Subjt:  KKNNKRTEDENEGWTVVTRCKKRQQSYAQKESRLFQHHKRKSKSQKKKRKQVTKKRVYAVREDETLFYPRQLVTLEEFFP---------KNSLIACHVTG

Query:  TTEDPSCSYETTTKFGNSSSFSIEDLLSLSQ--------------------------AAKSIPQTNLKE-------------------------------
        ++  P  +YE +T +  S  FS EDLL  S+                          A   +P++ +++                               
Subjt:  TTEDPSCSYETTTKFGNSSSFSIEDLLSLSQ--------------------------AAKSIPQTNLKE-------------------------------

Query:  -------------------------------ETIKCTNGSAPRNNEISTNFAKSKISKDEGSATSPILRYVPLSRRKKGESPFAE---------------
                                       E+ K T       +E ST+ AKS I  DE ++  PILRYVPLSRRKKGESPF E               
Subjt:  -------------------------------ETIKCTNGSAPRNNEISTNFAKSKISKDEGSATSPILRYVPLSRRKKGESPFAE---------------

Query:  -----------------------------------CAKSLA----------------------------KLLKEGYTIPASRKELGYKSPESVCIIRKEK
                                             KS+A                            KLL+EG+ IP SRK LGYK PE + I RK K
Subjt:  -----------------------------------CAKSLA----------------------------KLLKEGYTIPASRKELGYKSPESVCIIRKEK

Query:  TKVADANHITVEEVDDSDEKENVTRKTYVFSRVGPLVARPSALQRLGTIQVEEERSPPISGSTRASTLMRIRMPTETEGNVLSTLIPDFV
         KV D+NHITV+EVD  +EKE  +++T  F R+ P VAR    +RL  I+ E +     S   R ST  R+ M  + E   L     D +
Subjt:  TKVADANHITVEEVDDSDEKENVTRKTYVFSRVGPLVARPSALQRLGTIQVEEERSPPISGSTRASTLMRIRMPTETEGNVLSTLIPDFV

TYK28162.1 uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]5.4e-2534.68Show/hide
Query:  NEISTNFAKSKISKDEGSATSPILRYVPLSRRKKGESPFAECAKSL------------------------------------------------------
        +E STN AKS I  DE ++  PILRYVPLSRRKKGESPF E  + L                                                      
Subjt:  NEISTNFAKSKISKDEGSATSPILRYVPLSRRKKGESPFAECAKSL------------------------------------------------------

Query:  AKLLKEGYTIPASRKELGYKSPESVCIIRKEKTKVADANHITVEEVDDSDEKENVTRKTYVFSRVGPLVARPSALQRLGTIQVEEERSPPISGSTRASTL
         KLL+EG+ IP SRK LGYKSPE + I RK K KV D+NHITV+EVD  +EKE   ++T  F R+ P VAR    +RL   + E +     S   + S  
Subjt:  AKLLKEGYTIPASRKELGYKSPESVCIIRKEKTKVADANHITVEEVDDSDEKENVTRKTYVFSRVGPLVARPSALQRLGTIQVEEERSPPISGSTRASTL

Query:  MRIRMPTETEGNVLSTLIPDFVRPSVRQRLGVSAAERECMTSTPVVVR
         R+ +  + E  +  T +    +PS  +RL ++  +       P++ R
Subjt:  MRIRMPTETEGNVLSTLIPDFVRPSVRQRLGVSAAERECMTSTPVVVR

TrEMBL top hitse value%identityAlignment
A0A5A7TPR5 RNase H domain-containing protein1.1e-2637.55Show/hide
Query:  RNNEISTNFAKSKISKDEGSATSPILRYVPLSRRKKGESPFAECAKSL--------------AKLLKEGYTIPASRKELGYKSPESVCIIRKEKTKVADA
        R  E ST+  KS I  DE ++   ILRYVPLSRR+KGESPF +  + L               KLL+EG+ IP SRK  GYKSPE + IIRK K KV D+
Subjt:  RNNEISTNFAKSKISKDEGSATSPILRYVPLSRRKKGESPFAECAKSL--------------AKLLKEGYTIPASRKELGYKSPESVCIIRKEKTKVADA

Query:  NHITVEEVDDSDEKENVTRKTYVFSRVGPLVARPSALQRLGTIQVEEERSPPISGSTRASTLMRIRMPTETEGNVLSTLIPDFVRPSVRQRLGVSAAERE
        NHITV EVD  +EKE  +++   F ++ P V R +  +RL   + E +     S   + S L R+ M  + E      L     RPS  +RL V+  +  
Subjt:  NHITVEEVDDSDEKENVTRKTYVFSRVGPLVARPSALQRLGTIQVEEERSPPISGSTRASTLMRIRMPTETEGNVLSTLIPDFVRPSVRQRLGVSAAERE

Query:  CMTSTPVVVR---PSILQRLGAPVKEKKNVPSTSDVR
             P+  R        + G+ +  KK +P+ S V+
Subjt:  CMTSTPVVVR---PSILQRLGAPVKEKKNVPSTSDVR

A0A5A7UMY2 Reverse transcriptase domain-containing protein4.1e-2636.13Show/hide
Query:  NEISTNFAKSKISKDEGSATSPILRYVPLSRRKKGESPFAECAKSL--------------------------------------------AKLLKEGYTI
        +E STN AKS I  DE ++  PILRYVPLSRRKKGESPF E  + L                                             KLL+EG+ I
Subjt:  NEISTNFAKSKISKDEGSATSPILRYVPLSRRKKGESPFAECAKSL--------------------------------------------AKLLKEGYTI

Query:  PASRKELGYKSPESVCIIRKEKTKVADANHITVEEVDDSDEKENVTRKTYVFSRVGPLVARPSALQRLGTIQVEEERSPPISGSTRASTLMRIRMPTETE
        P SRK LGYKSPE + I RK K KV D NHITV+EVD  +EKE   ++T  F R+ P VAR    +RL   + + +     S   R S   R+ +  + E
Subjt:  PASRKELGYKSPESVCIIRKEKTKVADANHITVEEVDDSDEKENVTRKTYVFSRVGPLVARPSALQRLGTIQVEEERSPPISGSTRASTLMRIRMPTETE

Query:  GNVLSTLIPDFVRPSVRQRLGVSAAERECMTSTPVVVR
          +  T +    +PS  +RL ++  +       P++ R
Subjt:  GNVLSTLIPDFVRPSVRQRLGVSAAERECMTSTPVVVR

A0A5D3BY54 Ty3-gypsy retrotransposon protein4.1e-2627.76Show/hide
Query:  KKNNKRTEDENEGWTVVTRCKKRQQSYAQKESRLFQHHKRKSKSQKKKRKQVTKKRVYAVREDETLFYPRQLVTLEEFFP---------KNSLIACHVTG
        ++  +  E+++EGWTVVTR KKR+ +  QKESRL+ +++R +K+QK K+K+ T+K      +D+     +++VTL +FFP         +N  +    + 
Subjt:  KKNNKRTEDENEGWTVVTRCKKRQQSYAQKESRLFQHHKRKSKSQKKKRKQVTKKRVYAVREDETLFYPRQLVTLEEFFP---------KNSLIACHVTG

Query:  TTEDPSCSYETTTKFGNSSSFSIEDLLSLSQ--------------------------AAKSIPQTNLKE-------------------------------
        ++  P  +YE +T +  S  FS EDLL  S+                          A   +P++ +++                               
Subjt:  TTEDPSCSYETTTKFGNSSSFSIEDLLSLSQ--------------------------AAKSIPQTNLKE-------------------------------

Query:  -------------------------------ETIKCTNGSAPRNNEISTNFAKSKISKDEGSATSPILRYVPLSRRKKGESPFAE---------------
                                       E+ K T       +E ST+ AKS I  DE ++  PILRYVPLSRRKKGESPF E               
Subjt:  -------------------------------ETIKCTNGSAPRNNEISTNFAKSKISKDEGSATSPILRYVPLSRRKKGESPFAE---------------

Query:  -----------------------------------CAKSLA----------------------------KLLKEGYTIPASRKELGYKSPESVCIIRKEK
                                             KS+A                            KLL+EG+ IP SRK LGYK PE + I RK K
Subjt:  -----------------------------------CAKSLA----------------------------KLLKEGYTIPASRKELGYKSPESVCIIRKEK

Query:  TKVADANHITVEEVDDSDEKENVTRKTYVFSRVGPLVARPSALQRLGTIQVEEERSPPISGSTRASTLMRIRMPTETEGNVLSTLIPDFV
         KV D+NHITV+EVD  +EKE  +++T  F R+ P VAR    +RL  I+ E +     S   R ST  R+ M  + E   L     D +
Subjt:  TKVADANHITVEEVDDSDEKENVTRKTYVFSRVGPLVARPSALQRLGTIQVEEERSPPISGSTRASTLMRIRMPTETEGNVLSTLIPDFV

A0A5D3C8N8 Ribonuclease H1.3e-2438.69Show/hide
Query:  NEISTNFAKSKISKDEGSATSPILRYVPLSRRKKGESPFAECAKSL----AKLLKEGYTI---PASRKELGYKSPESVCIIRKEKTKVADANHITVEEVD
        NE ST+ AKS I  +E ++  PILRYVPLSR KKGESPF E  + L     ++LKE +TI     ++K LGYKSPE + I RK K KV D+NHITV+EVD
Subjt:  NEISTNFAKSKISKDEGSATSPILRYVPLSRRKKGESPFAECAKSL----AKLLKEGYTI---PASRKELGYKSPESVCIIRKEKTKVADANHITVEEVD

Query:  DSDEKENVTRKTYVFSRVGPLVARPSALQRLGTIQVEEERSPPISGSTRASTLMRIRMPTETEGNVLSTLIPDFVRPSVRQRLGVSAAERECMTSTPVV
          + KE  +++T  F R+ P VAR    +RL   + + +     S   R S   R+ +  + E  +    +    +PS  +RL ++  +       P++
Subjt:  DSDEKENVTRKTYVFSRVGPLVARPSALQRLGTIQVEEERSPPISGSTRASTLMRIRMPTETEGNVLSTLIPDFVRPSVRQRLGVSAAERECMTSTPVV

A0A5D3DXC7 Reverse transcriptase domain-containing protein2.6e-2534.68Show/hide
Query:  NEISTNFAKSKISKDEGSATSPILRYVPLSRRKKGESPFAECAKSL------------------------------------------------------
        +E STN AKS I  DE ++  PILRYVPLSRRKKGESPF E  + L                                                      
Subjt:  NEISTNFAKSKISKDEGSATSPILRYVPLSRRKKGESPFAECAKSL------------------------------------------------------

Query:  AKLLKEGYTIPASRKELGYKSPESVCIIRKEKTKVADANHITVEEVDDSDEKENVTRKTYVFSRVGPLVARPSALQRLGTIQVEEERSPPISGSTRASTL
         KLL+EG+ IP SRK LGYKSPE + I RK K KV D+NHITV+EVD  +EKE   ++T  F R+ P VAR    +RL   + E +     S   + S  
Subjt:  AKLLKEGYTIPASRKELGYKSPESVCIIRKEKTKVADANHITVEEVDDSDEKENVTRKTYVFSRVGPLVARPSALQRLGTIQVEEERSPPISGSTRASTL

Query:  MRIRMPTETEGNVLSTLIPDFVRPSVRQRLGVSAAERECMTSTPVVVR
         R+ +  + E  +  T +    +PS  +RL ++  +       P++ R
Subjt:  MRIRMPTETEGNVLSTLIPDFVRPSVRQRLGVSAAERECMTSTPVVVR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAAAAAAAATAATAAGCGGACCGAAGATGAAAATGAAGGTTGGACTGTCGTGACTCGTTGCAAGAAGCGACAACAAAGTTACGCACAGAAGGAATCGCGACTATT
CCAACACCATAAGAGAAAAAGTAAGTCGCAAAAGAAGAAAAGAAAACAGGTCACGAAGAAGCGTGTTTACGCCGTGAGGGAAGACGAAACCCTCTTCTACCCACGACAAC
TGGTAACTTTGGAGGAATTCTTCCCAAAGAATTCCCTAATTGCCTGTCACGTTACCGGTACGACTGAAGATCCTTCATGCTCGTATGAGACGACAACAAAGTTTGGAAAC
TCATCCTCATTCAGTATAGAGGACTTGTTGTCACTCTCCCAAGCAGCTAAGAGTATACCACAAACTAATTTGAAAGAAGAAACTATCAAATGTACAAATGGGTCTGCTCC
GAGAAACAACGAAATCTCTACGAATTTCGCAAAATCTAAAATTTCAAAAGATGAAGGAAGTGCGACCTCCCCTATTTTGCGTTACGTTCCTTTGTCACGACGCAAGAAGG
GTGAGTCACCATTTGCCGAATGCGCAAAAAGCCTGGCAAAGCTCCTGAAAGAAGGTTATACCATACCAGCATCAAGGAAAGAACTGGGATACAAGTCTCCTGAGTCAGTC
TGCATAATAAGAAAAGAGAAGACAAAGGTGGCAGACGCAAACCACATAACAGTGGAAGAGGTAGATGATTCAGATGAAAAGGAAAACGTCACCCGAAAGACTTATGTTTT
TAGCCGCGTCGGGCCGTTGGTGGCACGACCTTCAGCCCTCCAAAGATTGGGCACCATTCAAGTAGAAGAAGAGCGGTCACCTCCCATTTCTGGTTCCACTCGAGCCTCAA
CCCTCATGAGGATAAGGATGCCCACTGAAACAGAAGGAAATGTTTTATCAACCCTTATACCTGACTTCGTTCGACCTTCCGTTCGTCAGAGGCTAGGTGTGTCTGCTGCT
GAAAGAGAATGTATGACATCCACTCCAGTCGTAGTACGACCATCAATATTACAAAGGTTAGGTGCGCCTGTGAAGGAAAAGAAAAATGTACCTTCGACCTCAGACGTGCG
CGCCCTTCAACTTTTCAAAAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCAAAAAAAATAATAAGCGGACCGAAGATGAAAATGAAGGTTGGACTGTCGTGACTCGTTGCAAGAAGCGACAACAAAGTTACGCACAGAAGGAATCGCGACTATT
CCAACACCATAAGAGAAAAAGTAAGTCGCAAAAGAAGAAAAGAAAACAGGTCACGAAGAAGCGTGTTTACGCCGTGAGGGAAGACGAAACCCTCTTCTACCCACGACAAC
TGGTAACTTTGGAGGAATTCTTCCCAAAGAATTCCCTAATTGCCTGTCACGTTACCGGTACGACTGAAGATCCTTCATGCTCGTATGAGACGACAACAAAGTTTGGAAAC
TCATCCTCATTCAGTATAGAGGACTTGTTGTCACTCTCCCAAGCAGCTAAGAGTATACCACAAACTAATTTGAAAGAAGAAACTATCAAATGTACAAATGGGTCTGCTCC
GAGAAACAACGAAATCTCTACGAATTTCGCAAAATCTAAAATTTCAAAAGATGAAGGAAGTGCGACCTCCCCTATTTTGCGTTACGTTCCTTTGTCACGACGCAAGAAGG
GTGAGTCACCATTTGCCGAATGCGCAAAAAGCCTGGCAAAGCTCCTGAAAGAAGGTTATACCATACCAGCATCAAGGAAAGAACTGGGATACAAGTCTCCTGAGTCAGTC
TGCATAATAAGAAAAGAGAAGACAAAGGTGGCAGACGCAAACCACATAACAGTGGAAGAGGTAGATGATTCAGATGAAAAGGAAAACGTCACCCGAAAGACTTATGTTTT
TAGCCGCGTCGGGCCGTTGGTGGCACGACCTTCAGCCCTCCAAAGATTGGGCACCATTCAAGTAGAAGAAGAGCGGTCACCTCCCATTTCTGGTTCCACTCGAGCCTCAA
CCCTCATGAGGATAAGGATGCCCACTGAAACAGAAGGAAATGTTTTATCAACCCTTATACCTGACTTCGTTCGACCTTCCGTTCGTCAGAGGCTAGGTGTGTCTGCTGCT
GAAAGAGAATGTATGACATCCACTCCAGTCGTAGTACGACCATCAATATTACAAAGGTTAGGTGCGCCTGTGAAGGAAAAGAAAAATGTACCTTCGACCTCAGACGTGCG
CGCCCTTCAACTTTTCAAAAGCTAA
Protein sequenceShow/hide protein sequence
MPKKNNKRTEDENEGWTVVTRCKKRQQSYAQKESRLFQHHKRKSKSQKKKRKQVTKKRVYAVREDETLFYPRQLVTLEEFFPKNSLIACHVTGTTEDPSCSYETTTKFGN
SSSFSIEDLLSLSQAAKSIPQTNLKEETIKCTNGSAPRNNEISTNFAKSKISKDEGSATSPILRYVPLSRRKKGESPFAECAKSLAKLLKEGYTIPASRKELGYKSPESV
CIIRKEKTKVADANHITVEEVDDSDEKENVTRKTYVFSRVGPLVARPSALQRLGTIQVEEERSPPISGSTRASTLMRIRMPTETEGNVLSTLIPDFVRPSVRQRLGVSAA
ERECMTSTPVVVRPSILQRLGAPVKEKKNVPSTSDVRALQLFKS