CuGenDBv2

Gene ID	Tan0009854
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA ligase
Genome location	LG02:95675094..95675807
RNA-Seq Expression	Tan0009854
Synteny	Tan0009854
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008445585.1 PREDICTED: uncharacterized protein LOC103488565 [Cucumis melo]

2.4e-30

65.38

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Query:  SICCFHGSDQDDFLESPSKTPTSSPCSWLKSAASELPELLDRCRYLVARIGRGRRKHLGSADFSYDSSSYALNFEDDCRDDDEFPFRDFTARLPPAIKER
        S CCFH          PS TP +SPCSWLKS A EL  LL RCRY +AR+ R R  +L SADFSYDSSSYALNF+DDCRDD +FPFRDFTAR PP +K+R
Subjt:  SICCFHGSDQDDFLESPSKTPTSSPCSWLKSAASELPELLDRCRYLVARIGRGRRKHLGSADFSYDSSSYALNFEDDCRDDDEFPFRDFTARLPPAIKER

Query:  VPAA
        +PAA
Subjt:  VPAA

XP_022131639.1 uncharacterized protein LOC111004768 [Momordica charantia]

7.5e-32

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Query:  MLADFHHSSSSSSLAHKLKSSICCFHGSDQDDFLESPSKTPTSSPCSWLKSAASELPELLDRCRYLVARIGRG-RRKHLGSADFSYDSSSYALNFEDDCR
        MLADFHH   SSS AHKLKSSI CF  SDQ      PS   T SPCSW KS A+E P+LLDRCRYLVARIGRG RR++  S DF+YDSSSYALNFEDD R
Subjt:  MLADFHHSSSSSSLAHKLKSSICCFHGSDQDDFLESPSKTPTSSPCSWLKSAASELPELLDRCRYLVARIGRG-RRKHLGSADFSYDSSSYALNFEDDCR

Query:  DDDEFPFRDFTARLPPAIKERVPAA
         DDEFP R+F ARLP     R+PAA
Subjt:  DDDEFPFRDFTARLPPAIKERVPAA

XP_022962228.1 uncharacterized protein LOC111462741 [Cucurbita moschata]

3.6e-42

70.97

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Query:  MLADFHHSSSSSSLAHKLKSSICCFHGSDQDDFLESPSKTPTSSPCSWLKSAASELPELLDRCRYLVARIGRGRRKHLGSADFSYDSSSYALNFEDDCRD
        ML  FHH   S + A KLKSS CCFHG  QDDFL+SPSK+PT SPCSW KS   E   +L RCRYL+ARI R R+++L S DFSYDSSSYALNFEDDCR+
Subjt:  MLADFHHSSSSSSLAHKLKSSICCFHGSDQDDFLESPSKTPTSSPCSWLKSAASELPELLDRCRYLVARIGRGRRKHLGSADFSYDSSSYALNFEDDCRD

Query:  DDEFPFRDFTARLPPAIKERVPAA
        DDEFPFR+FTAR PP IKERVPAA
Subjt:  DDEFPFRDFTARLPPAIKERVPAA

XP_022997531.1 uncharacterized protein LOC111492424 [Cucurbita maxima]

1.1e-41

69.35

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Query:  MLADFHHSSSSSSLAHKLKSSICCFHGSDQDDFLESPSKTPTSSPCSWLKSAASELPELLDRCRYLVARIGRGRRKHLGSADFSYDSSSYALNFEDDCRD
        ML  FHH   S + A KLKSS CCFHG  QDDFL+SPSK+PT SPCSW KS   E   +L RCRYL+ARI R R+++L S DF+YDSSSYALNF+DDCR+
Subjt:  MLADFHHSSSSSSLAHKLKSSICCFHGSDQDDFLESPSKTPTSSPCSWLKSAASELPELLDRCRYLVARIGRGRRKHLGSADFSYDSSSYALNFEDDCRD

Query:  DDEFPFRDFTARLPPAIKERVPAA
        DDEFPFRDFTAR PP IKER PAA
Subjt:  DDEFPFRDFTARLPPAIKERVPAA

XP_023546798.1 uncharacterized protein LOC111805797 [Cucurbita pepo subsp. pepo]

2.1e-42

70.97

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Query:  MLADFHHSSSSSSLAHKLKSSICCFHGSDQDDFLESPSKTPTSSPCSWLKSAASELPELLDRCRYLVARIGRGRRKHLGSADFSYDSSSYALNFEDDCRD
        ML  FHH   S + A KLKSS CCFHG  QDDFL+SPSK+PT+SPCSW KS   E   +L RCRYL+ARI R R+++L S DFSYDSSSYALNFEDDCR+
Subjt:  MLADFHHSSSSSSLAHKLKSSICCFHGSDQDDFLESPSKTPTSSPCSWLKSAASELPELLDRCRYLVARIGRGRRKHLGSADFSYDSSSYALNFEDDCRD

Query:  DDEFPFRDFTARLPPAIKERVPAA
        DDEFPFR+FTAR PP IKERVPAA
Subjt:  DDEFPFRDFTARLPPAIKERVPAA

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BDX7 uncharacterized protein LOC103488565

1.2e-30

65.38

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Query:  SICCFHGSDQDDFLESPSKTPTSSPCSWLKSAASELPELLDRCRYLVARIGRGRRKHLGSADFSYDSSSYALNFEDDCRDDDEFPFRDFTARLPPAIKER
        S CCFH          PS TP +SPCSWLKS A EL  LL RCRY +AR+ R R  +L SADFSYDSSSYALNF+DDCRDD +FPFRDFTAR PP +K+R
Subjt:  SICCFHGSDQDDFLESPSKTPTSSPCSWLKSAASELPELLDRCRYLVARIGRGRRKHLGSADFSYDSSSYALNFEDDCRDDDEFPFRDFTARLPPAIKER

Query:  VPAA
        +PAA
Subjt:  VPAA

A0A6J1BQU1 uncharacterized protein LOC111004768

3.7e-32

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Query:  MLADFHHSSSSSSLAHKLKSSICCFHGSDQDDFLESPSKTPTSSPCSWLKSAASELPELLDRCRYLVARIGRG-RRKHLGSADFSYDSSSYALNFEDDCR
        MLADFHH   SSS AHKLKSSI CF  SDQ      PS   T SPCSW KS A+E P+LLDRCRYLVARIGRG RR++  S DF+YDSSSYALNFEDD R
Subjt:  MLADFHHSSSSSSLAHKLKSSICCFHGSDQDDFLESPSKTPTSSPCSWLKSAASELPELLDRCRYLVARIGRG-RRKHLGSADFSYDSSSYALNFEDDCR

Query:  DDDEFPFRDFTARLPPAIKERVPAA
         DDEFP R+F ARLP     R+PAA
Subjt:  DDDEFPFRDFTARLPPAIKERVPAA

A0A6J1HE78 uncharacterized protein LOC111462741

1.7e-42

70.97

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Query:  MLADFHHSSSSSSLAHKLKSSICCFHGSDQDDFLESPSKTPTSSPCSWLKSAASELPELLDRCRYLVARIGRGRRKHLGSADFSYDSSSYALNFEDDCRD
        ML  FHH   S + A KLKSS CCFHG  QDDFL+SPSK+PT SPCSW KS   E   +L RCRYL+ARI R R+++L S DFSYDSSSYALNFEDDCR+
Subjt:  MLADFHHSSSSSSLAHKLKSSICCFHGSDQDDFLESPSKTPTSSPCSWLKSAASELPELLDRCRYLVARIGRGRRKHLGSADFSYDSSSYALNFEDDCRD

Query:  DDEFPFRDFTARLPPAIKERVPAA
        DDEFPFR+FTAR PP IKERVPAA
Subjt:  DDEFPFRDFTARLPPAIKERVPAA

A0A6J1K7R1 uncharacterized protein LOC111492424

5.1e-42

69.35

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Query:  MLADFHHSSSSSSLAHKLKSSICCFHGSDQDDFLESPSKTPTSSPCSWLKSAASELPELLDRCRYLVARIGRGRRKHLGSADFSYDSSSYALNFEDDCRD
        ML  FHH   S + A KLKSS CCFHG  QDDFL+SPSK+PT SPCSW KS   E   +L RCRYL+ARI R R+++L S DF+YDSSSYALNF+DDCR+
Subjt:  MLADFHHSSSSSSLAHKLKSSICCFHGSDQDDFLESPSKTPTSSPCSWLKSAASELPELLDRCRYLVARIGRGRRKHLGSADFSYDSSSYALNFEDDCRD

Query:  DDEFPFRDFTARLPPAIKERVPAA
        DDEFPFRDFTAR PP IKER PAA
Subjt:  DDEFPFRDFTARLPPAIKERVPAA

A0A6P3ZZP3 uncharacterized protein LOC107421138

4.5e-22

56.78

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Query:  SSSSSSLAHKL-KSSIC---CFHGSDQDDFLESPSK-------TPTSSPCSWLKSAASELPELLDRCRYLVARIGRGRRKHLGSADFSYDSSSYALNFED
        SSSSSSL  KL KSS+C   CF  +   + LE+  K       +P+SS  SWLKS A +LPE+ DRCR L++RIG+GRR H  S +FSYD SSYALNFED
Subjt:  SSSSSSLAHKL-KSSIC---CFHGSDQDDFLESPSK-------TPTSSPCSWLKSAASELPELLDRCRYLVARIGRGRRKHLGSADFSYDSSSYALNFED

Query:  DCRDDDEFPFRDFTARLP
        + R +DEFP RDF++RLP
Subjt:  DCRDDDEFPFRDFTARLP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G11070.1 unknown protein

1.4e-12

40.8

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Query:  HKLKSSICCFHGS---DQDDFLESPSKTPTSSPCSWLKSAASELPELLDRCRYLVARIGRGRRK-------------HLGS--ADFSYDSSSYALNFEDD
        H+++S ICC   +   + +  +    +    SP  WLKS A EL EL DRCR + +RI    R              H  S   DFSYD  SYALNFED+
Subjt:  HKLKSSICCFHGS---DQDDFLESPSKTPTSSPCSWLKSAASELPELLDRCRYLVARIGRGRRK-------------HLGS--ADFSYDSSSYALNFEDD

Query:  CRDDDEFPFRDFTARLP--PAIKER
         R DD+  F +FTARLP  P  K R
Subjt:  CRDDDEFPFRDFTARLP--PAIKER

AT5G35090.1 unknown protein

1.9e-09

38.13

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Query:  SLAHKLKSSIC---CF-------HGSDQDDFLESPSKT--PTSSP-CSWLKSAASELPELL----DRCRYLVARIG------RGRRKHL--GSADFSYDS
        SL  KLKS  C   CF       H +  DD   SP  T   T SP    +K+ +  L   L    ++C+ L+ R+G       G  KH+   +ADF YD 
Subjt:  SLAHKLKSSIC---CF-------HGSDQDDFLESPSKT--PTSSP-CSWLKSAASELPELL----DRCRYLVARIG------RGRRKHL--GSADFSYDS

Query:  SSYALNFEDDCRDD--DEFPFRDFTARLPPAIKERVPAA
        SSYALNF+    DD  D FP R+F+ARLP +      AA
Subjt:  SSYALNFEDDCRDD--DEFPFRDFTARLPPAIKERVPAA

Sequences

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CDS sequence

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ATGTTGGCCGATTTTCATCACTCTTCTTCTTCTTCTTCTTTAGCTCACAAGCTCAAGTCGTCAATCTGTTGCTTTCACGGTTCCGATCAAGATGATTTTCTCGAATCGCC
CTCGAAGACGCCGACGAGCTCGCCTTGTTCCTGGTTGAAATCGGCGGCCAGTGAATTGCCGGAGTTACTTGATCGGTGTCGGTATCTCGTGGCTCGGATCGGTCGCGGCC
GGAGGAAGCACCTTGGCTCCGCTGATTTTAGCTACGATTCTTCCAGTTATGCCCTTAATTTTGAAGACGATTGTCGCGACGACGATGAGTTCCCATTTAGGGATTTTACG
GCCAGGTTGCCGCCGGCGATCAAGGAGCGTGTTCCGGCTGCCTAA

mRNA sequence

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CACTTTTTTCCTCTTCCCTTTTTGCCCCCAACCTATAAAATTCAACCCCTTTCCCTTATCTCACTCTCATCTTCATTCTCCATACCCACTCATTTCGAATTTCCAAAATC
CGTCTCTGATTCTGCAATGTTGGCCGATTTTCATCACTCTTCTTCTTCTTCTTCTTTAGCTCACAAGCTCAAGTCGTCAATCTGTTGCTTTCACGGTTCCGATCAAGATG
ATTTTCTCGAATCGCCCTCGAAGACGCCGACGAGCTCGCCTTGTTCCTGGTTGAAATCGGCGGCCAGTGAATTGCCGGAGTTACTTGATCGGTGTCGGTATCTCGTGGCT
CGGATCGGTCGCGGCCGGAGGAAGCACCTTGGCTCCGCTGATTTTAGCTACGATTCTTCCAGTTATGCCCTTAATTTTGAAGACGATTGTCGCGACGACGATGAGTTCCC
ATTTAGGGATTTTACGGCCAGGTTGCCGCCGGCGATCAAGGAGCGTGTTCCGGCTGCCTAATTTGCCGGATCTCAAGATGGAATCACGATTTCTGCGTGTGGTTGATTGA
TTACACAGCGGAATTTGAGATTTTCATTTTTTGCCGATTTTGAATGTAAATTGCCCTGTAAGAATTAACCGTTGTTGAAGTTCTAGCCAAATTGTAAATATATATTTACT
TTTCTTTTTTTTTTTGGGTGTTCATGAAATAAATATGAAATTGTTCGTAAGCAA

Protein sequence

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MLADFHHSSSSSSLAHKLKSSICCFHGSDQDDFLESPSKTPTSSPCSWLKSAASELPELLDRCRYLVARIGRGRRKHLGSADFSYDSSSYALNFEDDCRDDDEFPFRDFT
ARLPPAIKERVPAA

Tan0009854 (gene) of Snake gourd v1 genome