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Tan0009937 (gene) of Snake gourd v1 genome

Gene IDTan0009937
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposon protein
Genome locationLG02:85441173..85441655
RNA-Seq ExpressionTan0009937
SyntenyTan0009937
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022158565.1 uncharacterized protein LOC111025018 [Momordica charantia]1.3e-2039.62Show/hide
Query:  MAFNVAEQMEEEIRLGSQDFIGTEQRTMENPGLGDVGEDDLPDTPTSRRNTPGMSSRCTGSKRKRSSFQTELIDVVRTAMDMQTSHMQQLLSWQKEKYEL
        MA + A  + E+    +QDF   +          D  E+DLP+TPTS+   P + +   GSKRKRS + +E++DVVRT M MQT+H++++ +W  +K E 
Subjt:  MAFNVAEQMEEEIRLGSQDFIGTEQRTMENPGLGDVGEDDLPDTPTSRRNTPGMSSRCTGSKRKRSSFQTELIDVVRTAMDMQTSHMQQLLSWQKEKYEL

Query:  EASRRKEVVDLLYQIEGLTEHDRVSLIDLLVTDIQKTDCFLQVPPQSRKAYCMRLLGRT
        + +RRK V D L QI  L  +D V L+ +L+T+++K+  FL+VP + +K +CM+LLG++
Subjt:  EASRRKEVVDLLYQIEGLTEHDRVSLIDLLVTDIQKTDCFLQVPPQSRKAYCMRLLGRT

XP_038877407.1 uncharacterized protein LOC120069696 [Benincasa hispida]2.9e-2855.91Show/hide
Query:  VGEDDLPDTP----TSRRNTPGMSSRCTGSKRKRSSFQTELIDVVRTAMDMQTSHMQQLLSWQKEKYELEASRRKEVVDLLYQIEGLTEHDRVSLIDLLV
        + +D++ + P    T R + P  SSR  GSKRKRSSFQ E+ID++R+ ++M ++HM +L SWQK+KYELE  R+KEVV+ +Y I+GL E  +V+LIDL+V
Subjt:  VGEDDLPDTP----TSRRNTPGMSSRCTGSKRKRSSFQTELIDVVRTAMDMQTSHMQQLLSWQKEKYELEASRRKEVVDLLYQIEGLTEHDRVSLIDLLV

Query:  TDIQKTDCFLQVPPQSRKAYCMRLLGR
        TDIQKTDCFL VP  + K YC+RLLGR
Subjt:  TDIQKTDCFLQVPPQSRKAYCMRLLGR

XP_038887234.1 uncharacterized protein LOC120077425 [Benincasa hispida]1.0e-2855.56Show/hide
Query:  EQRTMENPGLGDVGEDDLPDTPTSRRNTPGMSSRCTGSKRKRSSFQTELIDVVRTAMDMQTSHMQQLLSWQKEKYELEASRRKEVVDLLYQIEGLTEHDR
        E R  E+P   D  +++  +  T R + P  SSR  GSKRKRSSFQ E+ID+V++ ++MQ++HM +L SWQ EKYELE    KEVV+ +Y I+ L E+D+
Subjt:  EQRTMENPGLGDVGEDDLPDTPTSRRNTPGMSSRCTGSKRKRSSFQTELIDVVRTAMDMQTSHMQQLLSWQKEKYELEASRRKEVVDLLYQIEGLTEHDR

Query:  VSLIDLLVTDIQKTDCFLQVPPQSRKAYCMRLLGR
        V+LIDL+VTDIQKTDCFL VP  +RK YC+RLLGR
Subjt:  VSLIDLLVTDIQKTDCFLQVPPQSRKAYCMRLLGR

XP_038895773.1 uncharacterized protein LOC120083935 [Benincasa hispida]2.3e-2068.42Show/hide
Query:  QTSHMQQLLSWQKEKYELEASRRKEVVDLLYQIEGLTEHDRVSLIDLLVTDIQKTDCFLQVPPQSRKAYCMRLLGR
        +++HM +L SWQKEKYELE  RRKEVV+ +Y I+GL E D+V+LIDLLVTDIQKT+CFL VP  +RK YC+RLLGR
Subjt:  QTSHMQQLLSWQKEKYELEASRRKEVVDLLYQIEGLTEHDRVSLIDLLVTDIQKTDCFLQVPPQSRKAYCMRLLGR

XP_038896380.1 uncharacterized protein LOC120084641 [Benincasa hispida]1.3e-2856.15Show/hide
Query:  ENPGLGDVGEDDLPDTPTSRRNTPGMSSRCTGSKRKRSSFQTELIDVVRTAMDMQTSHMQQLLSWQKEKYELEASRRKEVVDLLYQIEGLTEHDRVSLID
        E+P   D  +++  +  T R +    SSR  GSKRKR SFQ E+ID++R+ ++MQ++HM +L SWQKEKYELE  RRKEVV+ +Y I+GL E D+V+ ID
Subjt:  ENPGLGDVGEDDLPDTPTSRRNTPGMSSRCTGSKRKRSSFQTELIDVVRTAMDMQTSHMQQLLSWQKEKYELEASRRKEVVDLLYQIEGLTEHDRVSLID

Query:  LLVTDIQKTDCFLQVPPQSRKAYCMRLLGR
        LLVTDIQKTDCFL VP  +RK YC+ LL R
Subjt:  LLVTDIQKTDCFLQVPPQSRKAYCMRLLGR

TrEMBL top hitse value%identityAlignment
A0A5A7SQU2 Putative nuclease HARBI12.0e-0632.65Show/hide
Query:  TGSKRKRSSFQTELIDVVRTAMDMQTSHMQQLLSWQKEKYELEASRRKEVVDLLYQIEGLTEHDRVSLIDLLVTDIQKTDCFLQVPPQSRKAYCMRLL
        +GSKRK+ S   E ++V+++A++     ++ + +W KEK   E   R EV+  L  I  L   DR  LI +L   ++  + FL +P + +  YC  LL
Subjt:  TGSKRKRSSFQTELIDVVRTAMDMQTSHMQQLLSWQKEKYELEASRRKEVVDLLYQIEGLTEHDRVSLIDLLVTDIQKTDCFLQVPPQSRKAYCMRLL

A0A5A7TYQ6 Retrotransposon protein2.0e-0632.14Show/hide
Query:  SQDFIGTEQRTMENPGLGDVGEDDLPDTPTSRRNTPGMSSRCTGSKRKRSSFQTELIDVVRTAMDMQTSHMQQLLSWQKEKYELEASRRKEVVDLLYQIE
        + D   T+   M +PGL ++  DDL +T T+R +     S  +GSKRKRS   T+  D+VRTAM+     + ++  W   + +     R+E+V  L  I 
Subjt:  SQDFIGTEQRTMENPGLGDVGEDDLPDTPTSRRNTPGMSSRCTGSKRKRSSFQTELIDVVRTAMDMQTSHMQQLLSWQKEKYELEASRRKEVVDLLYQIE

Query:  GLTEHDRVSLIDLLVTDIQKTDCFLQVPPQSRKAYCMRLL
         LT  DR  L+ +++ ++     FL+VP   +  YC  +L
Subjt:  GLTEHDRVSLIDLLVTDIQKTDCFLQVPPQSRKAYCMRLL

A0A5A7U0H7 Retrotransposon protein2.6e-0633.33Show/hide
Query:  SKRKRSSFQTELIDVVRTAMDMQTSHMQQLLSWQKEKYELEASRRKEVVDLLYQIEGLTEHDRVSLIDLLVTDIQKTDCFLQVPPQSRKAYCMRLL
        SKRKR S + E ++V+R+ M+     ++ +  W KEK  +E   R +VV  L  I  L   DR  L+ +L   ++  + FL +P + +  YC  LL
Subjt:  SKRKRSSFQTELIDVVRTAMDMQTSHMQQLLSWQKEKYELEASRRKEVVDLLYQIEGLTEHDRVSLIDLLVTDIQKTDCFLQVPPQSRKAYCMRLL

A0A5D3CT52 Retrotransposon protein6.9e-0735.71Show/hide
Query:  TGSKRKRSSFQTELIDVVRTAMDMQTSHMQQLLSWQKEKYELEASRRKEVVDLLYQIEGLTEHDRVSLIDLLVTDIQKTDCFLQVPPQSRKAYCMRLL
        +GSKRKR S   E ++V+R+AM+     ++ + +W KEK   E   R EVV  L  I  L   DR  L+ +L   ++  + FL +P + +  YC  LL
Subjt:  TGSKRKRSSFQTELIDVVRTAMDMQTSHMQQLLSWQKEKYELEASRRKEVVDLLYQIEGLTEHDRVSLIDLLVTDIQKTDCFLQVPPQSRKAYCMRLL

A0A6J1DW73 uncharacterized protein LOC1110250186.4e-2139.62Show/hide
Query:  MAFNVAEQMEEEIRLGSQDFIGTEQRTMENPGLGDVGEDDLPDTPTSRRNTPGMSSRCTGSKRKRSSFQTELIDVVRTAMDMQTSHMQQLLSWQKEKYEL
        MA + A  + E+    +QDF   +          D  E+DLP+TPTS+   P + +   GSKRKRS + +E++DVVRT M MQT+H++++ +W  +K E 
Subjt:  MAFNVAEQMEEEIRLGSQDFIGTEQRTMENPGLGDVGEDDLPDTPTSRRNTPGMSSRCTGSKRKRSSFQTELIDVVRTAMDMQTSHMQQLLSWQKEKYEL

Query:  EASRRKEVVDLLYQIEGLTEHDRVSLIDLLVTDIQKTDCFLQVPPQSRKAYCMRLLGRT
        + +RRK V D L QI  L  +D V L+ +L+T+++K+  FL+VP + +K +CM+LLG++
Subjt:  EASRRKEVVDLLYQIEGLTEHDRVSLIDLLVTDIQKTDCFLQVPPQSRKAYCMRLLGRT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTTCAATGTTGCGGAACAAATGGAGGAGGAGATTCGTTTGGGATCACAAGACTTCATAGGGACAGAACAACGAACGATGGAGAATCCAGGACTTGGTGACGTAGG
GGAAGATGACTTGCCAGACACTCCTACTAGTAGGCGTAATACACCTGGCATGTCTTCTAGATGTACTGGGAGCAAAAGAAAACGATCGTCCTTCCAGACTGAATTAATTG
ATGTTGTGCGGACAGCAATGGATATGCAGACCAGTCACATGCAACAACTTCTATCATGGCAGAAGGAGAAGTATGAATTGGAGGCCTCACGAAGGAAAGAAGTAGTTGAT
CTCTTGTATCAGATAGAAGGATTGACTGAGCATGATCGTGTCTCCCTGATTGACTTGCTTGTGACTGATATCCAGAAGACTGATTGCTTTCTACAGGTTCCGCCTCAATC
GAGAAAGGCGTATTGCATGCGTCTTCTAGGAAGGACTGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTTCAATGTTGCGGAACAAATGGAGGAGGAGATTCGTTTGGGATCACAAGACTTCATAGGGACAGAACAACGAACGATGGAGAATCCAGGACTTGGTGACGTAGG
GGAAGATGACTTGCCAGACACTCCTACTAGTAGGCGTAATACACCTGGCATGTCTTCTAGATGTACTGGGAGCAAAAGAAAACGATCGTCCTTCCAGACTGAATTAATTG
ATGTTGTGCGGACAGCAATGGATATGCAGACCAGTCACATGCAACAACTTCTATCATGGCAGAAGGAGAAGTATGAATTGGAGGCCTCACGAAGGAAAGAAGTAGTTGAT
CTCTTGTATCAGATAGAAGGATTGACTGAGCATGATCGTGTCTCCCTGATTGACTTGCTTGTGACTGATATCCAGAAGACTGATTGCTTTCTACAGGTTCCGCCTCAATC
GAGAAAGGCGTATTGCATGCGTCTTCTAGGAAGGACTGGATGA
Protein sequenceShow/hide protein sequence
MAFNVAEQMEEEIRLGSQDFIGTEQRTMENPGLGDVGEDDLPDTPTSRRNTPGMSSRCTGSKRKRSSFQTELIDVVRTAMDMQTSHMQQLLSWQKEKYELEASRRKEVVD
LLYQIEGLTEHDRVSLIDLLVTDIQKTDCFLQVPPQSRKAYCMRLLGRTG