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Tan0009970 (gene) of Snake gourd v1 genome

Gene IDTan0009970
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRING-H2 finger protein ATL74-like
Genome locationLG03:62620022..62620519
RNA-Seq ExpressionTan0009970
SyntenyTan0009970
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025403.1 RING-H2 finger protein ATL74 [Cucumis melo var. makuwa]2.2e-3178.02Show/hide
Query:  AAAGVERGELEKIPVAVFGAEG--RIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKTALDGGGRGGSE
        AAA VER ELE+IPVAVF  EG  R+RGTECAICLGEFE+G+DLRILP+CNHGFHV CIDAWLVSHSSCP CRHS+ LKT  DGG  G SE
Subjt:  AAAGVERGELEKIPVAVFGAEG--RIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKTALDGGGRGGSE

XP_008463261.1 PREDICTED: RING-H2 finger protein ATL74 [Cucumis melo]3.8e-3177.17Show/hide
Query:  AAAAGVERGELEKIPVAVFGAEG--RIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKTALDGGGRGGSE
        +AAA VER ELE IPVAVF  EG  R+RGTECAICLGEFE+G+DLRILP+CNHGFHV CIDAWLVSHSSCP CRHS+ LKT  DGG  G SE
Subjt:  AAAAGVERGELEKIPVAVFGAEG--RIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKTALDGGGRGGSE

XP_011653722.1 RING-H2 finger protein ATL74 isoform X1 [Cucumis sativus]6.5e-3169.52Show/hide
Query:  AAAAGVERGELEKIPVAVFGAEGR--IRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKTALDGGG-------RGGSEG
        AAAA VER ELE+IPVAV+  EGR  IRGTECAICLGEFE+G+ LRI+PKCNHGFHV CIDAWLVSHSSCP CRHSL +KT  DGG        R G++G
Subjt:  AAAAGVERGELEKIPVAVFGAEGR--IRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKTALDGGG-------RGGSEG

Query:  GGGII
           II
Subjt:  GGGII

XP_022144089.1 RING-H2 finger protein ATL74-like [Momordica charantia]7.7e-3270.91Show/hide
Query:  LSSTSLCALRRTGRELDSLLRVAAAAGVE-RGELEKIPVAVF--GAEGRIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSL
        ++S   C  RR   EL      AA AGV+ RGELE+IPVAVF   AEGRIRGTECAICLGEFE GDDLRILP C+HGFHV CID W VSHSSCP CRHSL
Subjt:  LSSTSLCALRRTGRELDSLLRVAAAAGVE-RGELEKIPVAVF--GAEGRIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSL

Query:  LLKTALDGGG
        L KTA DGGG
Subjt:  LLKTALDGGG

XP_025695792.1 RING-H2 finger protein ATL74 [Arachis hypogaea]1.1e-2756Show/hide
Query:  LSSTSLCALRRTGREL--DSLLRVAAAAGVERGELEKIPVAVFGAEGRIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLL
        L+S + CAL R GR L  +      A  G+++  L +IPVAV+G+   I  TEC ICLGEFE GD +R+LP+CNHGFHV+CID WLVSHSSCP CRHSLL
Subjt:  LSSTSLCALRRTGREL--DSLLRVAAAAGVERGELEKIPVAVFGAEGRIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLL

Query:  LK-------TALDGGGRGGSEGGGG
         K       +A  GGG GG  GGGG
Subjt:  LK-------TALDGGGRGGSEGGGG

TrEMBL top hitse value%identityAlignment
A0A0A0L057 RING-type domain-containing protein3.2e-3169.52Show/hide
Query:  AAAAGVERGELEKIPVAVFGAEGR--IRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKTALDGGG-------RGGSEG
        AAAA VER ELE+IPVAV+  EGR  IRGTECAICLGEFE+G+ LRI+PKCNHGFHV CIDAWLVSHSSCP CRHSL +KT  DGG        R G++G
Subjt:  AAAAGVERGELEKIPVAVFGAEGR--IRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKTALDGGG-------RGGSEG

Query:  GGGII
           II
Subjt:  GGGII

A0A1S3CKD5 RING-H2 finger protein ATL741.8e-3177.17Show/hide
Query:  AAAAGVERGELEKIPVAVFGAEG--RIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKTALDGGGRGGSE
        +AAA VER ELE IPVAVF  EG  R+RGTECAICLGEFE+G+DLRILP+CNHGFHV CIDAWLVSHSSCP CRHS+ LKT  DGG  G SE
Subjt:  AAAAGVERGELEKIPVAVFGAEG--RIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKTALDGGGRGGSE

A0A5A7SL64 RING-H2 finger protein ATL741.1e-3178.02Show/hide
Query:  AAAGVERGELEKIPVAVFGAEG--RIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKTALDGGGRGGSE
        AAA VER ELE+IPVAVF  EG  R+RGTECAICLGEFE+G+DLRILP+CNHGFHV CIDAWLVSHSSCP CRHS+ LKT  DGG  G SE
Subjt:  AAAGVERGELEKIPVAVFGAEG--RIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKTALDGGGRGGSE

A0A5D3CEJ5 RING-H2 finger protein ATL741.8e-3177.17Show/hide
Query:  AAAAGVERGELEKIPVAVFGAEG--RIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKTALDGGGRGGSE
        +AAA VER ELE IPVAVF  EG  R+RGTECAICLGEFE+G+DLRILP+CNHGFHV CIDAWLVSHSSCP CRHS+ LKT  DGG  G SE
Subjt:  AAAAGVERGELEKIPVAVFGAEG--RIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKTALDGGGRGGSE

A0A6J1CR99 RING-H2 finger protein ATL74-like3.7e-3270.91Show/hide
Query:  LSSTSLCALRRTGRELDSLLRVAAAAGVE-RGELEKIPVAVF--GAEGRIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSL
        ++S   C  RR   EL      AA AGV+ RGELE+IPVAVF   AEGRIRGTECAICLGEFE GDDLRILP C+HGFHV CID W VSHSSCP CRHSL
Subjt:  LSSTSLCALRRTGRELDSLLRVAAAAGVE-RGELEKIPVAVF--GAEGRIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSL

Query:  LLKTALDGGG
        L KTA DGGG
Subjt:  LLKTALDGGG

SwissProt top hitse value%identityAlignment
Q9FLC6 RING-H2 finger protein ATL734.0e-2348.11Show/hide
Query:  CALRRTGRELDSLLRVAAAAGVERGELEKIPVAVFGAEGRIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKTALDGG
        C  R T  E         A G+++  L+ IPV  +  E +++ TEC ICLG+F  G+ +R+LPKCNHGFHV+CID WL+SHSSCPTCR SLL       G
Subjt:  CALRRTGRELDSLLRVAAAAGVERGELEKIPVAVFGAEGRIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKTALDGG

Query:  GRGGSE
         R G +
Subjt:  GRGGSE

Q9LM69 RING-H2 finger protein ATL801.0e-1848.42Show/hide
Query:  AAAAGVERGELEKIPVAVFGAEG--RIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKTALDGGGRGGSEGGG
        AA  G+++  L+ +P   F  E     +  ECAICL EF  GD+LR+LP+C HGFHV CID WL SHSSCP+CR  L++      GG  GS   G
Subjt:  AAAAGVERGELEKIPVAVFGAEG--RIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKTALDGGGRGGSEGGG

Q9LX93 E3 ubiquitin-protein ligase RING13.9e-1852.63Show/hide
Query:  GVERGELEKIPVAVF-GAEGRIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKT
        G+ R  +  I V  F   EG I GTEC++CL EFE  + LR+LPKC+H FH+ CID WL+SH +CP CR  +LL T
Subjt:  GVERGELEKIPVAVF-GAEGRIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKT

Q9LZV8 RING-H2 finger protein ATL744.7e-2455.88Show/hide
Query:  LSSTSLCALRRTGRELDSLL---RVAAAAGVERGELEKIPVAVFGA-EGRIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHS
        L+S   CA+ R G  L S      VA  AG+++ EL+K PVA +G+ E +I  TECAICLGEF +G+ +R+LP CNH FH+ CID WLVSHSSCP CRHS
Subjt:  LSSTSLCALRRTGRELDSLL---RVAAAAGVERGELEKIPVAVFGA-EGRIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHS

Query:  LL
        L+
Subjt:  LL

Q9SG96 RING-H2 finger protein ATL728.0e-2450.88Show/hide
Query:  LSSTSLCALRRTGRELD------------SLLRVAAAAGVERGELEKIPVAVFGAEGRI--RGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVS
        L+S   C LR T R               +L R+AAA G+++  L++IPV ++G+ G I  + TEC ICLG+FE+G+ +R+LPKCNHGFHV CID WL+S
Subjt:  LSSTSLCALRRTGRELD------------SLLRVAAAAGVERGELEKIPVAVFGAEGRI--RGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVS

Query:  HSSCPTCRHSLLLK
         SSCPTCR SLLL+
Subjt:  HSSCPTCRHSLLLK

Arabidopsis top hitse value%identityAlignment
AT1G20823.1 RING/U-box superfamily protein7.2e-2048.42Show/hide
Query:  AAAAGVERGELEKIPVAVFGAEG--RIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKTALDGGGRGGSEGGG
        AA  G+++  L+ +P   F  E     +  ECAICL EF  GD+LR+LP+C HGFHV CID WL SHSSCP+CR  L++      GG  GS   G
Subjt:  AAAAGVERGELEKIPVAVFGAEG--RIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKTALDGGGRGGSEGGG

AT3G10910.1 RING/U-box superfamily protein5.7e-2550.88Show/hide
Query:  LSSTSLCALRRTGRELD------------SLLRVAAAAGVERGELEKIPVAVFGAEGRI--RGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVS
        L+S   C LR T R               +L R+AAA G+++  L++IPV ++G+ G I  + TEC ICLG+FE+G+ +R+LPKCNHGFHV CID WL+S
Subjt:  LSSTSLCALRRTGRELD------------SLLRVAAAAGVERGELEKIPVAVFGAEGRI--RGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVS

Query:  HSSCPTCRHSLLLK
         SSCPTCR SLLL+
Subjt:  HSSCPTCRHSLLLK

AT5G01880.1 RING/U-box superfamily protein3.3e-2555.88Show/hide
Query:  LSSTSLCALRRTGRELDSLL---RVAAAAGVERGELEKIPVAVFGA-EGRIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHS
        L+S   CA+ R G  L S      VA  AG+++ EL+K PVA +G+ E +I  TECAICLGEF +G+ +R+LP CNH FH+ CID WLVSHSSCP CRHS
Subjt:  LSSTSLCALRRTGRELDSLL---RVAAAAGVERGELEKIPVAVFGA-EGRIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHS

Query:  LL
        L+
Subjt:  LL

AT5G05280.1 RING/U-box superfamily protein2.8e-2448.11Show/hide
Query:  CALRRTGRELDSLLRVAAAAGVERGELEKIPVAVFGAEGRIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKTALDGG
        C  R T  E         A G+++  L+ IPV  +  E +++ TEC ICLG+F  G+ +R+LPKCNHGFHV+CID WL+SHSSCPTCR SLL       G
Subjt:  CALRRTGRELDSLLRVAAAAGVERGELEKIPVAVFGAEGRIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKTALDGG

Query:  GRGGSE
         R G +
Subjt:  GRGGSE

AT5G10380.1 RING/U-box superfamily protein2.7e-1952.63Show/hide
Query:  GVERGELEKIPVAVF-GAEGRIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKT
        G+ R  +  I V  F   EG I GTEC++CL EFE  + LR+LPKC+H FH+ CID WL+SH +CP CR  +LL T
Subjt:  GVERGELEKIPVAVF-GAEGRIRGTECAICLGEFENGDDLRILPKCNHGFHVECIDAWLVSHSSCPTCRHSLLLKT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCATTTCTCCTCAAAATTTCCTCAAACACCCACAAAAAGCCATACAAATTAAAACAATCCCACCAAATGTTCCAGGCGGCGGCGTACAAGGCCGAGACGAATCTCT
ACATGATGATCGTCTTAGCAGCACTTCTCTGTGCGCTCTTCGGCGCACTGGCCGTGAACTCGATTCTCTGCTGCGTGTGGCGGCGGCGGCAGGGGTTGAGAGAGGCGAAT
TGGAGAAGATTCCGGTGGCGGTGTTTGGGGCGGAGGGGAGAATTAGAGGGACGGAATGTGCGATTTGTTTGGGGGAATTTGAAAATGGCGACGATTTGAGGATTTTGCCC
AAATGTAACCATGGATTTCATGTTGAATGTATTGATGCTTGGCTTGTTTCTCACTCTTCGTGCCCTACTTGCCGCCATTCTCTCCTGCTGAAGACGGCGCTGGATGGTGG
CGGCCGTGGCGGCAGTGAGGGTGGCGGAGGAATCATCAACCCGAGGTCGGTCCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCATTTCTCCTCAAAATTTCCTCAAACACCCACAAAAAGCCATACAAATTAAAACAATCCCACCAAATGTTCCAGGCGGCGGCGTACAAGGCCGAGACGAATCTCT
ACATGATGATCGTCTTAGCAGCACTTCTCTGTGCGCTCTTCGGCGCACTGGCCGTGAACTCGATTCTCTGCTGCGTGTGGCGGCGGCGGCAGGGGTTGAGAGAGGCGAAT
TGGAGAAGATTCCGGTGGCGGTGTTTGGGGCGGAGGGGAGAATTAGAGGGACGGAATGTGCGATTTGTTTGGGGGAATTTGAAAATGGCGACGATTTGAGGATTTTGCCC
AAATGTAACCATGGATTTCATGTTGAATGTATTGATGCTTGGCTTGTTTCTCACTCTTCGTGCCCTACTTGCCGCCATTCTCTCCTGCTGAAGACGGCGCTGGATGGTGG
CGGCCGTGGCGGCAGTGAGGGTGGCGGAGGAATCATCAACCCGAGGTCGGTCCGATGA
Protein sequenceShow/hide protein sequence
MSISPQNFLKHPQKAIQIKTIPPNVPGGGVQGRDESLHDDRLSSTSLCALRRTGRELDSLLRVAAAAGVERGELEKIPVAVFGAEGRIRGTECAICLGEFENGDDLRILP
KCNHGFHVECIDAWLVSHSSCPTCRHSLLLKTALDGGGRGGSEGGGGIINPRSVR