CuGenDBv2

Gene ID	Tan0009972
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG09:26490473..26490949
RNA-Seq Expression	Tan0009972
Synteny	Tan0009972
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

2.8e-55

73.89

Show/hide

Query:  YDRWIKANDKAKVYILASVSEVLAKKYEGMVSAREIMSSLQDMFGQPFGQLRHESLKYVYNSRMKEGSSVREHVLDLMVHLNVAEMNDAVIDEQSQVSFI
        Y+RW KAN+KA+ YILAS+SEVLAKK+E M++AREIM SLQ+MFGQ   Q++H++LKY+YN+RM EG+SVREHVL++MVH NVAEMN AVIDE SQVSFI
Subjt:  YDRWIKANDKAKVYILASVSEVLAKKYEGMVSAREIMSSLQDMFGQPFGQLRHESLKYVYNSRMKEGSSVREHVLDLMVHLNVAEMNDAVIDEQSQVSFI

Query:  LESLPKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQTDGEANLFAHSRSF
        LESLP+SFLQFRSNAVMNKI Y LTTLLNELQTF+SLMK KGQ  GEAN+   +R F
Subjt:  LESLPKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQTDGEANLFAHSRSF

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

2.8e-55

73.89

Show/hide

Query:  YDRWIKANDKAKVYILASVSEVLAKKYEGMVSAREIMSSLQDMFGQPFGQLRHESLKYVYNSRMKEGSSVREHVLDLMVHLNVAEMNDAVIDEQSQVSFI
        Y+RW KAN+KA+ YILAS+SEVLAKK+E M++AREIM SLQ+MFGQ   Q++H++LKY+YN+RM EG+SVREHVL++MVH NVAEMN AVIDE SQVSFI
Subjt:  YDRWIKANDKAKVYILASVSEVLAKKYEGMVSAREIMSSLQDMFGQPFGQLRHESLKYVYNSRMKEGSSVREHVLDLMVHLNVAEMNDAVIDEQSQVSFI

Query:  LESLPKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQTDGEANLFAHSRSF
        LESLP+SFLQFRSNAVMNKI Y LTTLLNELQTF+SLMK KGQ  GEAN+   +R F
Subjt:  LESLPKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQTDGEANLFAHSRSF

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

2.8e-55

73.89

Show/hide

Query:  YDRWIKANDKAKVYILASVSEVLAKKYEGMVSAREIMSSLQDMFGQPFGQLRHESLKYVYNSRMKEGSSVREHVLDLMVHLNVAEMNDAVIDEQSQVSFI
        Y+RW KAN+KA+ YILAS+SEVLAKK+E M++AREIM SLQ+MFGQ   Q++H++LKY+YN+RM EG+SVREHVL++MVH NVAEMN AVIDE SQVSFI
Subjt:  YDRWIKANDKAKVYILASVSEVLAKKYEGMVSAREIMSSLQDMFGQPFGQLRHESLKYVYNSRMKEGSSVREHVLDLMVHLNVAEMNDAVIDEQSQVSFI

Query:  LESLPKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQTDGEANLFAHSRSF
        LESLP+SFLQFRSNAVMNKI Y LTTLLNELQTF+SLMK KGQ  GEAN+   +R F
Subjt:  LESLPKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQTDGEANLFAHSRSF

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

2.8e-55

73.89

Show/hide

Query:  YDRWIKANDKAKVYILASVSEVLAKKYEGMVSAREIMSSLQDMFGQPFGQLRHESLKYVYNSRMKEGSSVREHVLDLMVHLNVAEMNDAVIDEQSQVSFI
        Y+RW KAN+KA+ YILAS+SEVLAKK+E M++AREIM SLQ+MFGQ   Q++H++LKY+YN+RM EG+SVREHVL++MVH NVAEMN AVIDE SQVSFI
Subjt:  YDRWIKANDKAKVYILASVSEVLAKKYEGMVSAREIMSSLQDMFGQPFGQLRHESLKYVYNSRMKEGSSVREHVLDLMVHLNVAEMNDAVIDEQSQVSFI

Query:  LESLPKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQTDGEANLFAHSRSF
        LESLP+SFLQFRSNAVMNKI Y LTTLLNELQTF+SLMK KGQ  GEAN+   +R F
Subjt:  LESLPKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQTDGEANLFAHSRSF

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

2.8e-55

73.89

Show/hide

Query:  YDRWIKANDKAKVYILASVSEVLAKKYEGMVSAREIMSSLQDMFGQPFGQLRHESLKYVYNSRMKEGSSVREHVLDLMVHLNVAEMNDAVIDEQSQVSFI
        Y+RW KAN+KA+ YILAS+SEVLAKK+E M++AREIM SLQ+MFGQ   Q++H++LKY+YN+RM EG+SVREHVL++MVH NVAEMN AVIDE SQVSFI
Subjt:  YDRWIKANDKAKVYILASVSEVLAKKYEGMVSAREIMSSLQDMFGQPFGQLRHESLKYVYNSRMKEGSSVREHVLDLMVHLNVAEMNDAVIDEQSQVSFI

Query:  LESLPKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQTDGEANLFAHSRSF
        LESLP+SFLQFRSNAVMNKI Y LTTLLNELQTF+SLMK KGQ  GEAN+   +R F
Subjt:  LESLPKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQTDGEANLFAHSRSF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

1.3e-55

73.89

Show/hide

Query:  YDRWIKANDKAKVYILASVSEVLAKKYEGMVSAREIMSSLQDMFGQPFGQLRHESLKYVYNSRMKEGSSVREHVLDLMVHLNVAEMNDAVIDEQSQVSFI
        Y+RW KAN+KA+ YILAS+SEVLAKK+E M++AREIM SLQ+MFGQ   Q++H++LKY+YN+RM EG+SVREHVL++MVH NVAEMN AVIDE SQVSFI
Subjt:  YDRWIKANDKAKVYILASVSEVLAKKYEGMVSAREIMSSLQDMFGQPFGQLRHESLKYVYNSRMKEGSSVREHVLDLMVHLNVAEMNDAVIDEQSQVSFI

Query:  LESLPKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQTDGEANLFAHSRSF
        LESLP+SFLQFRSNAVMNKI Y LTTLLNELQTF+SLMK KGQ  GEAN+   +R F
Subjt:  LESLPKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQTDGEANLFAHSRSF

A0A5A7TU93 Gag/pol protein

1.3e-55

73.89

Show/hide

Query:  YDRWIKANDKAKVYILASVSEVLAKKYEGMVSAREIMSSLQDMFGQPFGQLRHESLKYVYNSRMKEGSSVREHVLDLMVHLNVAEMNDAVIDEQSQVSFI
        Y+RW KAN+KA+ YILAS+SEVLAKK+E M++AREIM SLQ+MFGQ   Q++H++LKY+YN+RM EG+SVREHVL++MVH NVAEMN AVIDE SQVSFI
Subjt:  YDRWIKANDKAKVYILASVSEVLAKKYEGMVSAREIMSSLQDMFGQPFGQLRHESLKYVYNSRMKEGSSVREHVLDLMVHLNVAEMNDAVIDEQSQVSFI

Query:  LESLPKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQTDGEANLFAHSRSF
        LESLP+SFLQFRSNAVMNKI Y LTTLLNELQTF+SLMK KGQ  GEAN+   +R F
Subjt:  LESLPKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQTDGEANLFAHSRSF

A0A5A7TWB9 Gag/pol protein

1.3e-55

73.89

Show/hide

Query:  YDRWIKANDKAKVYILASVSEVLAKKYEGMVSAREIMSSLQDMFGQPFGQLRHESLKYVYNSRMKEGSSVREHVLDLMVHLNVAEMNDAVIDEQSQVSFI
        Y+RW KAN+KA+ YILAS+SEVLAKK+E M++AREIM SLQ+MFGQ   Q++H++LKY+YN+RM EG+SVREHVL++MVH NVAEMN AVIDE SQVSFI
Subjt:  YDRWIKANDKAKVYILASVSEVLAKKYEGMVSAREIMSSLQDMFGQPFGQLRHESLKYVYNSRMKEGSSVREHVLDLMVHLNVAEMNDAVIDEQSQVSFI

Query:  LESLPKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQTDGEANLFAHSRSF
        LESLP+SFLQFRSNAVMNKI Y LTTLLNELQTF+SLMK KGQ  GEAN+   +R F
Subjt:  LESLPKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQTDGEANLFAHSRSF

A0A5A7V4M1 Gag/pol protein

1.3e-55

73.89

Show/hide

Query:  YDRWIKANDKAKVYILASVSEVLAKKYEGMVSAREIMSSLQDMFGQPFGQLRHESLKYVYNSRMKEGSSVREHVLDLMVHLNVAEMNDAVIDEQSQVSFI
        Y+RW KAN+KA+ YILAS+SEVLAKK+E M++AREIM SLQ+MFGQ   Q++H++LKY+YN+RM EG+SVREHVL++MVH NVAEMN AVIDE SQVSFI
Subjt:  YDRWIKANDKAKVYILASVSEVLAKKYEGMVSAREIMSSLQDMFGQPFGQLRHESLKYVYNSRMKEGSSVREHVLDLMVHLNVAEMNDAVIDEQSQVSFI

Query:  LESLPKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQTDGEANLFAHSRSF
        LESLP+SFLQFRSNAVMNKI Y LTTLLNELQTF+SLMK KGQ  GEAN+   +R F
Subjt:  LESLPKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQTDGEANLFAHSRSF

A0A5D3CPJ6 Gag/pol protein

1.3e-55

73.89

Show/hide

Query:  YDRWIKANDKAKVYILASVSEVLAKKYEGMVSAREIMSSLQDMFGQPFGQLRHESLKYVYNSRMKEGSSVREHVLDLMVHLNVAEMNDAVIDEQSQVSFI
        Y+RW KAN+KA+ YILAS+SEVLAKK+E M++AREIM SLQ+MFGQ   Q++H++LKY+YN+RM EG+SVREHVL++MVH NVAEMN AVIDE SQVSFI
Subjt:  YDRWIKANDKAKVYILASVSEVLAKKYEGMVSAREIMSSLQDMFGQPFGQLRHESLKYVYNSRMKEGSSVREHVLDLMVHLNVAEMNDAVIDEQSQVSFI

Query:  LESLPKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQTDGEANLFAHSRSF
        LESLP+SFLQFRSNAVMNKI Y LTTLLNELQTF+SLMK KGQ  GEAN+   +R F
Subjt:  LESLPKSFLQFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQTDGEANLFAHSRSF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTATGACCGTTGGATCAAGGCCAATGATAAGGCCAAGGTCTACATTTTGGCTAGTGTTTCTGAAGTTCTAGCCAAAAAGTACGAGGGCATGGTCTCAGCTCGTGAGAT
CATGAGTTCGTTGCAAGATATGTTTGGACAACCGTTTGGACAGCTTCGGCACGAATCCCTCAAATACGTTTATAACTCCCGTATGAAGGAGGGGTCGTCGGTGAGAGAAC
ATGTTCTCGATCTTATGGTCCACTTGAACGTGGCTGAAATGAACGACGCGGTCATTGACGAGCAAAGTCAGGTCTCGTTCATCCTGGAATCTCTTCCGAAGAGCTTCCTG
CAATTCCGCAGCAATGCGGTGATGAACAAGATAGAGTATAACTTGACTACTCTCCTTAATGAACTACAAACTTTTCAGTCTCTTATGAAGAATAAGGGACAGACTGATGG
AGAGGCAAATCTGTTTGCCCATTCCAGAAGTTTCTAG

mRNA sequence

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Protein sequence

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MYDRWIKANDKAKVYILASVSEVLAKKYEGMVSAREIMSSLQDMFGQPFGQLRHESLKYVYNSRMKEGSSVREHVLDLMVHLNVAEMNDAVIDEQSQVSFILESLPKSFL
QFRSNAVMNKIEYNLTTLLNELQTFQSLMKNKGQTDGEANLFAHSRSF

Tan0009972 (gene) of Snake gourd v1 genome