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Tan0009978 (gene) of Snake gourd v1 genome

Gene IDTan0009978
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG11:3163754..3166246
RNA-Seq ExpressionTan0009978
SyntenyTan0009978
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4313148.1 unnamed protein product [Prunus armeniaca]8.7e-0635.29Show/hide
Query:  PQTPNNTELPDQWSLPVQGSWSLSTDASWSTDLNCGGVGWIVRDLEGRVVCAGQKFLSSNWHILILELSGIPTRFK--SHFQFTD
        P  P ++ +P  W  P  G   ++ DA+WS    CGGVGW++RD  G ++CAG +        L++EL  I       SHF  T+
Subjt:  PQTPNNTELPDQWSLPVQGSWSLSTDASWSTDLNCGGVGWIVRDLEGRVVCAGQKFLSSNWHILILELSGIPTRFK--SHFQFTD

XP_008230243.1 PREDICTED: uncharacterized protein LOC103329537 [Prunus mume]6.7e-0634.12Show/hide
Query:  PQTPNNTELPDQWSLPVQGSWSLSTDASWSTDLNCGGVGWIVRDLEGRVVCAGQKFLSSNWHILILELSGIPTRFKS--HFQFTD
        P    N  +P  W  P  G   ++ DA+WS   +CGGVGW++RD    ++CAG +        L++EL  I     +  HF  TD
Subjt:  PQTPNNTELPDQWSLPVQGSWSLSTDASWSTDLNCGGVGWIVRDLEGRVVCAGQKFLSSNWHILILELSGIPTRFKS--HFQFTD

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]3.9e-0641.67Show/hide
Query:  QWSLPVQGSWSLSTDASWSTDLNCGGVGWIVRDLEGRVVCAGQKFLSSNWHILILELSGI
        QW  P   SW L+T+A+W  D N GG+GWI+RD +G V+ A  + + +  +I  LE+  I
Subjt:  QWSLPVQGSWSLSTDASWSTDLNCGGVGWIVRDLEGRVVCAGQKFLSSNWHILILELSGI

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.9e-0540Show/hide
Query:  QWSLPVQGSWSLSTDASWSTDLNCGGVGWIVRDLEGRVVCAGQKFLSSNWHILILELSGI
        +W  P    W+L+ DASWS   + GG+GWI+R  +G +V AG +F+ +  ++ +LE S I
Subjt:  QWSLPVQGSWSLSTDASWSTDLNCGGVGWIVRDLEGRVVCAGQKFLSSNWHILILELSGI

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]3.9e-0641.67Show/hide
Query:  QWSLPVQGSWSLSTDASWSTDLNCGGVGWIVRDLEGRVVCAGQKFLSSNWHILILELSGI
        +W  P   SW L+TDA+W  D N GG+GWI+RD +G V+ A  + + +  +I  LE+  I
Subjt:  QWSLPVQGSWSLSTDASWSTDLNCGGVGWIVRDLEGRVVCAGQKFLSSNWHILILELSGI

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134121.9e-0641.67Show/hide
Query:  QWSLPVQGSWSLSTDASWSTDLNCGGVGWIVRDLEGRVVCAGQKFLSSNWHILILELSGI
        QW  P   SW L+T+A+W  D N GG+GWI+RD +G V+ A  + + +  +I  LE+  I
Subjt:  QWSLPVQGSWSLSTDASWSTDLNCGGVGWIVRDLEGRVVCAGQKFLSSNWHILILELSGI

A0A6J1DNV9 uncharacterized protein LOC1110224039.4e-0640Show/hide
Query:  QWSLPVQGSWSLSTDASWSTDLNCGGVGWIVRDLEGRVVCAGQKFLSSNWHILILELSGI
        +W  P    W+L+ DASWS   + GG+GWI+R  +G +V AG +F+ +  ++ +LE S I
Subjt:  QWSLPVQGSWSLSTDASWSTDLNCGGVGWIVRDLEGRVVCAGQKFLSSNWHILILELSGI

A0A6J1DSV1 uncharacterized protein LOC1110236081.9e-0641.67Show/hide
Query:  QWSLPVQGSWSLSTDASWSTDLNCGGVGWIVRDLEGRVVCAGQKFLSSNWHILILELSGI
        +W  P   SW L+TDA+W  D N GG+GWI+RD +G V+ A  + + +  +I  LE+  I
Subjt:  QWSLPVQGSWSLSTDASWSTDLNCGGVGWIVRDLEGRVVCAGQKFLSSNWHILILELSGI

A0A6J5XPQ2 RNase H domain-containing protein4.2e-0635.29Show/hide
Query:  PQTPNNTELPDQWSLPVQGSWSLSTDASWSTDLNCGGVGWIVRDLEGRVVCAGQKFLSSNWHILILELSGIPTRFK--SHFQFTD
        P  P ++ +P  W  P  G   ++ DA+WS    CGGVGW++RD  G ++CAG +        L++EL  I       SHF  T+
Subjt:  PQTPNNTELPDQWSLPVQGSWSLSTDASWSTDLNCGGVGWIVRDLEGRVVCAGQKFLSSNWHILILELSGIPTRFK--SHFQFTD

A0A6P5SQ64 uncharacterized protein LOC1107587823.6e-0531Show/hide
Query:  SQIEDFTFISGETFPQTPN--NTELPDQWSLPVQGSWSLSTDASWSTDLNCGGVGWIVRDLEGRVVCAGQKFLSSNWHILILELSGIPTRFK--SHFQFT
        +Q+ ++     E  PQ     ++ +   W  P+ G   ++ DA+WS  L  GGVGW++RD  G ++CAG +       +L++EL  I       +HFQ T
Subjt:  SQIEDFTFISGETFPQTPN--NTELPDQWSLPVQGSWSLSTDASWSTDLNCGGVGWIVRDLEGRVVCAGQKFLSSNWHILILELSGIPTRFK--SHFQFT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAGCCTTAAAAAGAATCAAACGGAACAAACCAAATCCACATCCCAAATCGAGGATTTTACATTCATCTCTGGGGAGACATTCCCACAAACTCCAAATAATACAGA
ATTACCAGATCAATGGTCTCTGCCCGTACAGGGGTCTTGGAGCCTTAGTACGGATGCATCTTGGAGTACAGATCTCAATTGTGGTGGAGTAGGATGGATCGTTCGTGATT
TGGAAGGGAGAGTGGTTTGCGCCGGACAAAAGTTCCTTTCATCGAACTGGCATATCTTGATACTGGAGCTTAGTGGGATCCCTACAAGGTTTAAGAGCCATTTCCAATTC
ACAGATTCCCTTGGTGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAGCCTTAAAAAGAATCAAACGGAACAAACCAAATCCACATCCCAAATCGAGGATTTTACATTCATCTCTGGGGAGACATTCCCACAAACTCCAAATAATACAGA
ATTACCAGATCAATGGTCTCTGCCCGTACAGGGGTCTTGGAGCCTTAGTACGGATGCATCTTGGAGTACAGATCTCAATTGTGGTGGAGTAGGATGGATCGTTCGTGATT
TGGAAGGGAGAGTGGTTTGCGCCGGACAAAAGTTCCTTTCATCGAACTGGCATATCTTGATACTGGAGCTTAGTGGGATCCCTACAAGGTTTAAGAGCCATTTCCAATTC
ACAGATTCCCTTGGTGGTTGA
Protein sequenceShow/hide protein sequence
MKSLKKNQTEQTKSTSQIEDFTFISGETFPQTPNNTELPDQWSLPVQGSWSLSTDASWSTDLNCGGVGWIVRDLEGRVVCAGQKFLSSNWHILILELSGIPTRFKSHFQF
TDSLGG