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Tan0009998 (gene) of Snake gourd v1 genome

Gene IDTan0009998
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionserine-rich protein-related
Genome locationLG06:3264035..3264334
RNA-Seq ExpressionTan0009998
SyntenyTan0009998
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058731.1 uncharacterized protein E6C27_scaffold339G002010 [Cucumis melo var. makuwa]1.9e-3071.15Show/hide
Query:  MANKTAPSSRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKASTATD---LVKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVAS--DHR
        MANKTA SSRLCLCAPTTHPGSFRCSLHRRP  + +    PL  P GSQSKA+T T     +KAFLMQ++KPSSH LQRR NFQPKPSRFCN+ S  D R
Subjt:  MANKTAPSSRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKASTATD---LVKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVAS--DHR

Query:  LAVS
        LAVS
Subjt:  LAVS

KAG6593379.1 hypothetical protein SDJN03_12855, partial [Cucurbita argyrosperma subsp. sororia]3.1e-3686Show/hide
Query:  MANKTAPSS-RLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKASTATDLVKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVASDHRLAVS
        MANKTAPSS RLCLCAPTTHPGSFRCSLHRR RKA +NK PPL  PPG+QSKA +ATDLVKAFLMQVIKPSS DLQRRRNFQPKPSRFCN ASD+ LAVS
Subjt:  MANKTAPSS-RLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKASTATDLVKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVASDHRLAVS

KAG7014157.1 hypothetical protein SDJN02_24331, partial [Cucurbita argyrosperma subsp. argyrosperma]8.7e-3175.73Show/hide
Query:  MANKTAPSSRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKA----STATDLVKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVASDHRL
        MANKTA SSRLCLCAPT+HPGSFRCSLHRRPRKA +       +  GSQSKA    STAT L K FLMQ IKPSSHDL RRRNFQPKPSRFCN ASDHRL
Subjt:  MANKTAPSSRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKA----STATDLVKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVASDHRL

Query:  AVS
         VS
Subjt:  AVS

KAG7025727.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-3585.71Show/hide
Query:  MANKTAPSS-RLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKASTATDLVKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVASDHRLA
        MANKTAPSS RLCLCAPTTHPGSFRCSLHRR RKA +NK PPL  PPG+QSKA +ATDLVKAFLMQVIKPSS DLQRRRNFQPKPSRFCN ASD+ LA
Subjt:  MANKTAPSS-RLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKASTATDLVKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVASDHRLA

XP_008461151.1 PREDICTED: uncharacterized protein LOC103499822 [Cucumis melo]7.4e-3070.19Show/hide
Query:  MANKTAPSSRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKASTATD---LVKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVAS--DHR
        M NKTA SSRLCLCAPTTHPGSFRCSLHRRP  + +    PL  P GSQSKA+T T     +KAFLMQ++KPSSH LQRR NFQPKPSRFCN+ S  D R
Subjt:  MANKTAPSSRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKASTATD---LVKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVAS--DHR

Query:  LAVS
        LAVS
Subjt:  LAVS

TrEMBL top hitse value%identityAlignment
A0A0A0K698 Uncharacterized protein4.4e-2871.7Show/hide
Query:  MANKTAPSSRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPP--GSQSK-ASTATD--LVKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNV--ASD
        M NKTA SSRLCLCAPTTHPGSFRCSLHRR   + ++K PPL  P   GSQSK A+T TD  L+KAFLMQ++KPSSHDLQRR +F+PKPSRFC+V  ASD
Subjt:  MANKTAPSSRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPP--GSQSK-ASTATD--LVKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNV--ASD

Query:  HRLAVS
         RLAVS
Subjt:  HRLAVS

A0A1S3CEH6 uncharacterized protein LOC1034998223.6e-3070.19Show/hide
Query:  MANKTAPSSRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKASTATD---LVKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVAS--DHR
        M NKTA SSRLCLCAPTTHPGSFRCSLHRRP  + +    PL  P GSQSKA+T T     +KAFLMQ++KPSSH LQRR NFQPKPSRFCN+ S  D R
Subjt:  MANKTAPSSRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKASTATD---LVKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVAS--DHR

Query:  LAVS
        LAVS
Subjt:  LAVS

A0A1U7ZP33 uncharacterized protein LOC1045926553.0e-2153.4Show/hide
Query:  MANKTAPS-------SRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKAST--ATDLVKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVA
        MA++T PS       +R CLC+PT HPGSFRCSLHR  RK Y      +A  PGS+S+  T   ++L+K FL+Q+IKPS HD+ RRRNFQPKP+RFC + 
Subjt:  MANKTAPS-------SRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKAST--ATDLVKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVA

Query:  SDH
        S++
Subjt:  SDH

A0A5A7UZ19 Uncharacterized protein9.4e-3171.15Show/hide
Query:  MANKTAPSSRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKASTATD---LVKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVAS--DHR
        MANKTA SSRLCLCAPTTHPGSFRCSLHRRP  + +    PL  P GSQSKA+T T     +KAFLMQ++KPSSH LQRR NFQPKPSRFCN+ S  D R
Subjt:  MANKTAPSSRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKASTATD---LVKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVAS--DHR

Query:  LAVS
        LAVS
Subjt:  LAVS

A0A6J1DD51 uncharacterized protein LOC1110193814.4e-2872.82Show/hide
Query:  MANKTAPS----SRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKASTATDLVKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVASDHRL
        MA KTAPS    SRLCLCAPTTHPGSFRCSLHRRPRKA +  K   A      +K    TDLVKAFLMQ+IKPSSHDLQRRRNFQPKPSRFCNV S   L
Subjt:  MANKTAPS----SRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKASTATDLVKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVASDHRL

Query:  AVS
        AVS
Subjt:  AVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G24577.1 unknown protein1.3e-0551.61Show/hide
Query:  MANKTAPSSRLCLCAPTTHPGSFRCSLHRRP
        ++ +T+ +  +C+C+PTTHPGSF+C LHR P
Subjt:  MANKTAPSSRLCLCAPTTHPGSFRCSLHRRP

AT5G11090.1 serine-rich protein-related1.4e-1036.56Show/hide
Query:  SRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKASTATDL----------VKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVA
        SR C+C+PTTHPGSFRCSLH+     +            +  +++    L          V+  L  +I+PSSH L+RR  +QP+PSR   +A
Subjt:  SRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKASTATDL----------VKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVA

AT5G20370.1 serine-rich protein-related6.1e-0632.69Show/hide
Query:  SSRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQS----KASTATDLVKAFLM--------------------QVIKPSSHDLQRRRNFQPK
        + R CLC+PTTHPGSFRCS HRR     +       V   ++     + +   +L K  LM                     + KPSS    RR  F+P+
Subjt:  SSRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQS----KASTATDLVKAFLM--------------------QVIKPSSHDLQRRRNFQPK

Query:  PSRF
         SRF
Subjt:  PSRF

AT5G25280.1 serine-rich protein-related1.2e-0932.32Show/hide
Query:  NKTAPSSRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKASTATDL----------VKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVA
        +K   S R C+C+PTTHPGSFRCSLH+     +            +  +++    L          V+  L  +I+PSSH L+RR  ++P+ SR  +++
Subjt:  NKTAPSSRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKASTATDL----------VKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVA

AT5G25280.2 serine-rich protein-related1.2e-0932.32Show/hide
Query:  NKTAPSSRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKASTATDL----------VKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVA
        +K   S R C+C+PTTHPGSFRCSLH+     +            +  +++    L          V+  L  +I+PSSH L+RR  ++P+ SR  +++
Subjt:  NKTAPSSRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKASTATDL----------VKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAACAAAACCGCTCCATCTTCCCGCCTCTGTCTCTGTGCTCCGACCACCCACCCCGGCTCTTTCCGCTGCAGCCTCCACCGCCGTCCGCGGAAGGCCTACAACAA
CAAAAAGCCACCGCTGGCGGTGCCGCCTGGAAGCCAGTCGAAAGCCTCCACCGCGACCGATCTCGTCAAGGCGTTTCTGATGCAGGTGATCAAGCCGTCGAGTCACGATC
TCCAGAGAAGGAGGAATTTCCAGCCTAAACCCTCCCGATTCTGTAATGTCGCTTCCGATCATCGCTTGGCGGTTTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAACAAAACCGCTCCATCTTCCCGCCTCTGTCTCTGTGCTCCGACCACCCACCCCGGCTCTTTCCGCTGCAGCCTCCACCGCCGTCCGCGGAAGGCCTACAACAA
CAAAAAGCCACCGCTGGCGGTGCCGCCTGGAAGCCAGTCGAAAGCCTCCACCGCGACCGATCTCGTCAAGGCGTTTCTGATGCAGGTGATCAAGCCGTCGAGTCACGATC
TCCAGAGAAGGAGGAATTTCCAGCCTAAACCCTCCCGATTCTGTAATGTCGCTTCCGATCATCGCTTGGCGGTTTCTTGA
Protein sequenceShow/hide protein sequence
MANKTAPSSRLCLCAPTTHPGSFRCSLHRRPRKAYNNKKPPLAVPPGSQSKASTATDLVKAFLMQVIKPSSHDLQRRRNFQPKPSRFCNVASDHRLAVS