CuGenDBv2

Gene ID	Tan0010047
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Rep_fac-A_C domain-containing protein
Genome location	LG05:1629970..1632685
RNA-Seq Expression	Tan0010047
Synteny	Tan0010047
Gene Ontology terms	NA
InterPro domains	IPR012340 - Nucleic acid-binding, OB-fold

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022943427.1 uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata]

7.0e-79

92.45

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Query:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPDNPPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGSSADEFFDFAKL
        MENDKPITTMCAVIAMDHTSFCYRVCSICERTLP NPP SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDR ARVLFG SADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPDNPPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGSSADEFFDFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHSRVVQIVPLSSSFQPAILRLRELYGVSR
        HPFAAE V+EILEGEMFRMTISKPKNGNAQHSRVVQ+VPLSS FQPAILRLRELYG+++
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHSRVVQIVPLSSSFQPAILRLRELYGVSR

XP_022943430.1 uncharacterized protein LOC111448196 isoform X2 [Cucurbita moschata]

7.0e-79

92.45

Show/hide

Query:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPDNPPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGSSADEFFDFAKL
        MENDKPITTMCAVIAMDHTSFCYRVCSICERTLP NPP SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDR ARVLFG SADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPDNPPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGSSADEFFDFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHSRVVQIVPLSSSFQPAILRLRELYGVSR
        HPFAAE V+EILEGEMFRMTISKPKNGNAQHSRVVQ+VPLSS FQPAILRLRELYG+++
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHSRVVQIVPLSSSFQPAILRLRELYGVSR

XP_022985581.1 uncharacterized protein LOC111483608 isoform X3 [Cucurbita maxima]

7.7e-78

91.82

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Query:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPDNPPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGSSADEFFDFAKL
        MENDK ITTMCAVIAMDHTSFCYRVCSICERTLP NPP SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDR ARVLFG SADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPDNPPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGSSADEFFDFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHSRVVQIVPLSSSFQPAILRLRELYGVSR
        HPFAAE V+EILEGEMFRMTISKPKNGNAQHSRVVQ+VPLSS FQPAILRLRELYG+++
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHSRVVQIVPLSSSFQPAILRLRELYGVSR

XP_023512879.1 uncharacterized protein LOC111777484 isoform X3 [Cucurbita pepo subsp. pepo]

4.5e-78

92.45

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Query:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPDNPPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGSSADEFFDFAKL
        MENDKPITTMCAVIAMDHTSFCYRVCSICERTLP NPP SLCKFCNFNAFNP SSSSKRVFRLLMSIATDKKVQTVICFDR ARVLFG SADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPDNPPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGSSADEFFDFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHSRVVQIVPLSSSFQPAILRLRELYGVSR
        HPFAAE V+EILEGEMFRMTISKPKNGNAQHSRVVQ+VPLSS FQPAILRLRELYG+++
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHSRVVQIVPLSSSFQPAILRLRELYGVSR

XP_038901726.1 uncharacterized protein LOC120088466 [Benincasa hispida]

2.9e-77

92.95

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Query:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPDNPPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGSSADEFFDFAKL
        MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPDNP SS+CKFCNFNAFNP  SSSKRVFRLLMSIATD+KVQTVICFDRAARVLFG SADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPDNPPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGSSADEFFDFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHSRVVQIVPLSSSFQPAILRLRELYG
        HPFAAETV+EILEGEMFR+TISKPKNGNAQHSRVVQ+VPLSS FQPAI RLRELYG
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHSRVVQIVPLSSSFQPAILRLRELYG

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CHW5 uncharacterized protein LOC111011075

3.2e-77

91.67

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Query:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPDNPPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGSSADEFFDFAKL
        MENDKPITTMC V+AMDH+SFCYRVCSICER+LPDNP SSLCKFCNFNAFNPG SSSKR+FRLLMSIATDKKVQTVICFDRAARVLFG SADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPDNPPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGSSADEFFDFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHSRVVQIVPLSSSFQPAILRLRELYG
        HPFAAET +EILEGEMFRMTISKPKNGNAQHSRVVQ+VPLSS FQPAI+RLRELYG
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHSRVVQIVPLSSSFQPAILRLRELYG

A0A6J1FWW9 uncharacterized protein LOC111448196 isoform X1

3.4e-79

92.45

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Query:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPDNPPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGSSADEFFDFAKL
        MENDKPITTMCAVIAMDHTSFCYRVCSICERTLP NPP SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDR ARVLFG SADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPDNPPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGSSADEFFDFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHSRVVQIVPLSSSFQPAILRLRELYGVSR
        HPFAAE V+EILEGEMFRMTISKPKNGNAQHSRVVQ+VPLSS FQPAILRLRELYG+++
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHSRVVQIVPLSSSFQPAILRLRELYGVSR

A0A6J1FXT2 uncharacterized protein LOC111448196 isoform X2

3.4e-79

92.45

Show/hide

Query:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPDNPPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGSSADEFFDFAKL
        MENDKPITTMCAVIAMDHTSFCYRVCSICERTLP NPP SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDR ARVLFG SADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPDNPPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGSSADEFFDFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHSRVVQIVPLSSSFQPAILRLRELYGVSR
        HPFAAE V+EILEGEMFRMTISKPKNGNAQHSRVVQ+VPLSS FQPAILRLRELYG+++
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHSRVVQIVPLSSSFQPAILRLRELYGVSR

A0A6J1J8M2 uncharacterized protein LOC111483608 isoform X3

3.7e-78

91.82

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Query:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPDNPPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGSSADEFFDFAKL
        MENDK ITTMCAVIAMDHTSFCYRVCSICERTLP NPP SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDR ARVLFG SADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPDNPPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGSSADEFFDFAKL

Query:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHSRVVQIVPLSSSFQPAILRLRELYGVSR
        HPFAAE V+EILEGEMFRMTISKPKNGNAQHSRVVQ+VPLSS FQPAILRLRELYG+++
Subjt:  HPFAAETVNEILEGEMFRMTISKPKNGNAQHSRVVQIVPLSSSFQPAILRLRELYGVSR

A0A6J1JE09 uncharacterized protein LOC111483608 isoform X1

3.5e-76

88.48

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Query:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPDNPPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGSSADEFFDFAKL
        MENDK ITTMCAVIAMDHTSFCYRVCSICERTLP NPP SLCKFCNFNAFNPGSSSSKRVFR+LMSIATDKKVQTVICFDR ARVLFG SADEFFDFAKL
Subjt:  MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPDNPPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGSSADEFFDFAKL

Query:  HPF------AAETVNEILEGEMFRMTISKPKNGNAQHSRVVQIVPLSSSFQPAILRLRELYGVSR
        HPF      AAE V+EILEGEMFRMTISKPKNGNAQHSRVVQ+VPLSS FQPAILRLRELYG+++
Subjt:  HPF------AAETVNEILEGEMFRMTISKPKNGNAQHSRVVQIVPLSSSFQPAILRLRELYGVSR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G28105.1 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

7.3e-42

56.29

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Query:  TTMCAVIAMDHTSFCYRVCSICERTLP-DN---PPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGSSADEFFDFAKLHPF
        T +C ++A+D T +CYRVCS C+R LP DN     SS CKFC        S   K ++R+LMSIATD  V+TVICFDRAA VLFG SADEFF F KL+P 
Subjt:  TTMCAVIAMDHTSFCYRVCSICERTLP-DN---PPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGSSADEFFDFAKLHPF

Query:  AAETVNEILEGEMFRMTISKPKNGNAQHSRVVQIVPLSSSFQPAILRLREL
        AA  VN++ +GEM RMT+++P+N NAQH RV  +VPL S  QPAI+ LR++
Subjt:  AAETVNEILEGEMFRMTISKPKNGNAQHSRVVQIVPLSSSFQPAILRLREL

Sequences

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CDS sequence

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ATGGAAAATGATAAGCCAATAACAACCATGTGCGCAGTGATAGCCATGGATCACACCAGTTTCTGTTACAGGGTTTGTTCTATCTGTGAGAGGACTCTTCCCGATAACCC
CCCTTCTTCTCTCTGCAAATTCTGCAACTTCAACGCCTTCAATCCCGGTTCCTCCTCCTCCAAACGCGTCTTTCGTCTCCTTATGTCAATTGCAACGGATAAGAAAGTAC
AAACTGTAATATGCTTTGATAGGGCTGCTAGGGTTCTGTTTGGTTCCTCTGCTGATGAGTTTTTCGACTTTGCTAAGCTACATCCTTTTGCCGCTGAAACTGTAAATGAA
ATTCTGGAGGGAGAGATGTTTAGGATGACGATCTCTAAACCCAAGAATGGCAATGCACAACACTCGAGAGTTGTACAAATTGTTCCACTGAGTTCAAGTTTTCAACCAGC
AATTCTGAGACTGAGGGAATTGTATGGGGTAAGTAGAGAAGCTGCTCATAATTTTCCTCCCTTTGTCAATAGTACGTTCATACAGTGTGTAACACAGTGA

mRNA sequence

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GTGAAAAGAACCATTCTTTGAGGATAAACTAATACTCACCTTATCCCGTGTTTAAAAATCAAAAATTAAATAATAAAAAAAAAAGGTCCCTTTGGCTTTTATTCTTTGAT
TTCCCCCCAAAACCCCAACTTTTGGGGTATCTGAACAGGGAATCGCGGTGGAGCGGCGCGGCCTTTTCAGTTTCCAGCAACGGAGGCAATCTCCTTCTGTGGAGCGATGG
AAAATGATAAGCCAATAACAACCATGTGCGCAGTGATAGCCATGGATCACACCAGTTTCTGTTACAGGGTTTGTTCTATCTGTGAGAGGACTCTTCCCGATAACCCCCCT
TCTTCTCTCTGCAAATTCTGCAACTTCAACGCCTTCAATCCCGGTTCCTCCTCCTCCAAACGCGTCTTTCGTCTCCTTATGTCAATTGCAACGGATAAGAAAGTACAAAC
TGTAATATGCTTTGATAGGGCTGCTAGGGTTCTGTTTGGTTCCTCTGCTGATGAGTTTTTCGACTTTGCTAAGCTACATCCTTTTGCCGCTGAAACTGTAAATGAAATTC
TGGAGGGAGAGATGTTTAGGATGACGATCTCTAAACCCAAGAATGGCAATGCACAACACTCGAGAGTTGTACAAATTGTTCCACTGAGTTCAAGTTTTCAACCAGCAATT
CTGAGACTGAGGGAATTGTATGGGGTAAGTAGAGAAGCTGCTCATAATTTTCCTCCCTTTGTCAATAGTACGTTCATACAGTGTGTAACACAGTGAAGATGATTATTTTA
GATATTGAGGAATTGAGATACATGTGAAGTGAGCTAGTTTCTGGGAGGTGTTCTAAAAGAGATATGGAAGCCTTTGAATTCTCTTCAGTTGTATTGCTG

Protein sequence

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MENDKPITTMCAVIAMDHTSFCYRVCSICERTLPDNPPSSLCKFCNFNAFNPGSSSSKRVFRLLMSIATDKKVQTVICFDRAARVLFGSSADEFFDFAKLHPFAAETVNE
ILEGEMFRMTISKPKNGNAQHSRVVQIVPLSSSFQPAILRLRELYGVSREAAHNFPPFVNSTFIQCVTQ

Tan0010047 (gene) of Snake gourd v1 genome