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Tan0010150 (gene) of Snake gourd v1 genome

Gene IDTan0010150
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptiontranscription factor PRE6-like
Genome locationLG04:9976285..9976667
RNA-Seq ExpressionTan0010150
SyntenyTan0010150
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135185.1 transcription factor PRE6 [Cucumis sativus]1.2e-3493.68Show/hide
Query:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS RSSRSRRS V SRNISD+QIADLISKLQ LIPEIRN RSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Subjt:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

XP_022151230.1 transcription factor PRE6-like [Momordica charantia]1.7e-3696.84Show/hide
Query:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MSSRSSRSRRS VPSRNISDDQIADLISKLQ LIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLS+RLSELLASTDPESAQAAIIRSLLM
Subjt:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

XP_022945906.1 transcription factor PRE6-like [Cucurbita moschata]5.6e-3594.74Show/hide
Query:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MSSRSSRSRRSSVPS NISD+QIADLISKLQ LIPEIRNARSSSRVSASKVLQETCNYIRSLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Subjt:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

XP_022968308.1 transcription factor PRE6-like [Cucurbita maxima]4.3e-3594.74Show/hide
Query:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MSSRSSRSRRSSVPS NISD+QIADLISKLQ LIPEIRNARSSSRVSASKVLQETCNYIRSLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Subjt:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

XP_038893351.1 transcription factor PRE6-like [Benincasa hispida]3.9e-3695.79Show/hide
Query:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS RSSRSRRS VPSRNISDDQIADLISKLQ LIPEIRN RSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Subjt:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

TrEMBL top hitse value%identityAlignment
A0A0A0KQJ7 Transcription regulator6.0e-3593.68Show/hide
Query:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS RSSRSRRS V SRNISD+QIADLISKLQ LIPEIRN RSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Subjt:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

A0A1S3BFH5 transcription factor PRE6-like1.3e-3492.63Show/hide
Query:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS RSSRSRRS V SRNISD+QIADLISKLQ LIPEIRN RSSSRVSASKVLQETCNYIRSLQREVDDLSDRLS+LLASTDPESAQAAIIRSLLM
Subjt:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

A0A6J1DAM4 transcription factor PRE6-like8.4e-3796.84Show/hide
Query:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MSSRSSRSRRS VPSRNISDDQIADLISKLQ LIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLS+RLSELLASTDPESAQAAIIRSLLM
Subjt:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

A0A6J1G268 transcription factor PRE6-like2.7e-3594.74Show/hide
Query:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MSSRSSRSRRSSVPS NISD+QIADLISKLQ LIPEIRNARSSSRVSASKVLQETCNYIRSLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Subjt:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

A0A6J1HXN1 transcription factor PRE6-like2.1e-3594.74Show/hide
Query:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MSSRSSRSRRSSVPS NISD+QIADLISKLQ LIPEIRNARSSSRVSASKVLQETCNYIRSLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Subjt:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI61.3e-2370.53Show/hide
Query:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MSSR SRSR+S   S  I+D+QI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIRSL +EVDDLS+RLSELLA++D  SAQAAIIRSLLM
Subjt:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

Q0DUR2 Transcription factor ILI61.3e-2370.53Show/hide
Query:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MSSR SRSR+S   S  I+D+QI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIRSL +EVDDLS+RLSELLA++D  SAQAAIIRSLLM
Subjt:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

Q8GW32 Transcription factor PRE66.4e-2677.42Show/hide
Query:  SSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL
        S RSSRSR+S   S  ISDDQI+DL+SKLQ LIPE+R  R S +VSASKVLQETCNYIR+L REVDDLSDRLSELLASTD  SA+AAIIRSLL
Subjt:  SSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL

Q9CA64 Transcription factor PRE33.9e-2369.15Show/hide
Query:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL
        MS R SRSR+SS  SR IS+DQI DLI KLQ L+PE+R++R S +VSA++VLQ+TCNYIR+L REVDDLS+RLSELLA++D  +AQAA+IRSLL
Subjt:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL

Q9LXG5 Transcription factor PRE23.0e-2369.57Show/hide
Query:  SRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL
        S S RSR++S  SR ISDDQI DLISKL+  IPEIR  R S+ VSASKVLQETCNYIR+L +E DDLSDRL++LL S DP S QAA+IRSL+
Subjt:  SRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein4.6e-2777.42Show/hide
Query:  SSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL
        S RSSRSR+S   S  ISDDQI+DL+SKLQ LIPE+R  R S +VSASKVLQETCNYIR+L REVDDLSDRLSELLASTD  SA+AAIIRSLL
Subjt:  SSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 12.8e-2469.15Show/hide
Query:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL
        MS R SRSR+SS  SR IS+DQI DLI KLQ L+PE+R++R S +VSA++VLQ+TCNYIR+L REVDDLS+RLSELLA++D  +AQAA+IRSLL
Subjt:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein2.3e-2366.32Show/hide
Query:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS+R  RSR++S  SR ISDDQ+ DL+SKL+  +PEI   R S +VSASKVLQETCNYIR L REVD+LSDRLS+LL S D +S +AA+IRSLLM
Subjt:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

AT5G15160.1 BANQUO 22.1e-2469.57Show/hide
Query:  SRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL
        S S RSR++S  SR ISDDQI DLISKL+  IPEIR  R S+ VSASKVLQETCNYIR+L +E DDLSDRL++LL S DP S QAA+IRSL+
Subjt:  SRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLL

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein5.8e-2263.16Show/hide
Query:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
        MS+R  RSR+SS   R ISD+Q+ DL+SKL+ ++PEI   R S + SASKVLQETCNYIR+L REVD+LS+RLS+LL S D +S +AA+IRSLLM
Subjt:  MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAGCAGAAGCTCCCGTTCTAGACGCTCGTCTGTTCCTTCTAGGAACATTTCTGACGACCAGATTGCTGATTTGATCTCCAAGTTACAACTACTCATCCCTGAGAT
TCGCAATGCCCGTTCCTCCTCCAGGGTATCAGCTTCAAAGGTTTTACAAGAGACTTGCAACTACATAAGAAGCTTACAAAGAGAGGTGGATGACTTAAGCGACCGATTAT
CAGAGCTATTGGCTTCAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTACTTATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGAGCAGAAGCTCCCGTTCTAGACGCTCGTCTGTTCCTTCTAGGAACATTTCTGACGACCAGATTGCTGATTTGATCTCCAAGTTACAACTACTCATCCCTGAGAT
TCGCAATGCCCGTTCCTCCTCCAGGGTATCAGCTTCAAAGGTTTTACAAGAGACTTGCAACTACATAAGAAGCTTACAAAGAGAGGTGGATGACTTAAGCGACCGATTAT
CAGAGCTATTGGCTTCAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTACTTATGTAA
Protein sequenceShow/hide protein sequence
MSSRSSRSRRSSVPSRNISDDQIADLISKLQLLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM