; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0010153 (gene) of Snake gourd v1 genome

Gene IDTan0010153
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibosome biogenesis protein
Genome locationLG04:31034660..31037169
RNA-Seq ExpressionTan0010153
SyntenyTan0010153
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0030686 - 90S preribosome (cellular component)
GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domainsIPR028160 - Ribosome biogenesis protein Slx9-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589685.1 hypothetical protein SDJN03_15108, partial [Cucurbita argyrosperma subsp. sororia]1.0e-5780.89Show/hide
Query:  MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTITKKKLRRRKRDLKVFDLSSLSESLAELKAPKQKASAAELKLNCKSRLKFLLKEKKQMAS
        MGKP S+SDSKSKAE K+EKK+QFY+RVGET+A L+AQKTITK KLRRRKRDLK FDL++LSE L  LKAPKQK S  ELK+NCKSRLKF+LKE KQM +
Subjt:  MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTITKKKLRRRKRDLKVFDLSSLSESLAELKAPKQKASAAELKLNCKSRLKFLLKEKKQMAS

Query:  VLNHPAFQADPLGAMYLHLKSTQPVEEPKKKKTNKNGSKKRKEKKSKATARPSSMEM
        VLNHPAFQADPLGA++LHL+STQPVEE KKKKTN+NGSKKRKEKKSKATA+PSSMEM
Subjt:  VLNHPAFQADPLGAMYLHLKSTQPVEEPKKKKTNKNGSKKRKEKKSKATARPSSMEM

XP_022922102.1 putative ribosome biogenesis protein slx9-like [Cucurbita moschata]2.7e-5881.53Show/hide
Query:  MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTITKKKLRRRKRDLKVFDLSSLSESLAELKAPKQKASAAELKLNCKSRLKFLLKEKKQMAS
        MGKP S+SDSKSKAE K+EKK+QFY+RVGET+A L+AQKTITKKKLRRRKRDLK FDL++LSE L  LKAPKQK S  ELK+NCKSRLKF+LKE KQM +
Subjt:  MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTITKKKLRRRKRDLKVFDLSSLSESLAELKAPKQKASAAELKLNCKSRLKFLLKEKKQMAS

Query:  VLNHPAFQADPLGAMYLHLKSTQPVEEPKKKKTNKNGSKKRKEKKSKATARPSSMEM
        VLNHPAFQADPLGA++LHL+STQPVEE KKKKTN+NGSKKRKEKKSKATA+PSSMEM
Subjt:  VLNHPAFQADPLGAMYLHLKSTQPVEEPKKKKTNKNGSKKRKEKKSKATARPSSMEM

XP_022987345.1 putative ribosome biogenesis protein slx9-like [Cucurbita maxima]7.8e-5880.89Show/hide
Query:  MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTITKKKLRRRKRDLKVFDLSSLSESLAELKAPKQKASAAELKLNCKSRLKFLLKEKKQMAS
        MGKP S+SDSKSKAE K+EKK+QFY+RVGET+A L+AQKTITKKKLRRRKRDLK FDL++LSE L  LK PKQK S  ELK+NCKSRLKF+LKE KQM +
Subjt:  MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTITKKKLRRRKRDLKVFDLSSLSESLAELKAPKQKASAAELKLNCKSRLKFLLKEKKQMAS

Query:  VLNHPAFQADPLGAMYLHLKSTQPVEEPKKKKTNKNGSKKRKEKKSKATARPSSMEM
        VLNHPAFQADPLGA++LHL+STQPVEE KKKKTN+NGSKKRKEKKSKATA+PSSMEM
Subjt:  VLNHPAFQADPLGAMYLHLKSTQPVEEPKKKKTNKNGSKKRKEKKSKATARPSSMEM

XP_023515417.1 putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo]3.2e-5982.17Show/hide
Query:  MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTITKKKLRRRKRDLKVFDLSSLSESLAELKAPKQKASAAELKLNCKSRLKFLLKEKKQMAS
        MGKP S+SDSKSKAE K+EKK+QFY+RVGET+A L+AQKTITKKKLRRRKRDLK FDL++LSE L  LKAPKQK S  ELK+NCKSRLKF+LKE KQM +
Subjt:  MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTITKKKLRRRKRDLKVFDLSSLSESLAELKAPKQKASAAELKLNCKSRLKFLLKEKKQMAS

Query:  VLNHPAFQADPLGAMYLHLKSTQPVEEPKKKKTNKNGSKKRKEKKSKATARPSSMEM
        VLNHPAFQADPLGA++LHL+STQPVEEPKKKKTN+NGSKKRKEKKSKATA+PSSMEM
Subjt:  VLNHPAFQADPLGAMYLHLKSTQPVEEPKKKKTNKNGSKKRKEKKSKATARPSSMEM

XP_038900086.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida]1.0e-5480.38Show/hide
Query:  MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTITKKKL-RRRKRDLKVFDLSSLSESLAELKAPKQKASAAELKLNCKSRLKFLLKEKKQMA
        MGKPVS+SDSKSKAE K+EKKVQFY+RVGET++ L+AQKTITKKK  RRRKRDLK FDLS+LSE L  L+APKQK SAAELKLNCKSRLKF+LKE+KQM 
Subjt:  MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTITKKKL-RRRKRDLKVFDLSSLSESLAELKAPKQKASAAELKLNCKSRLKFLLKEKKQMA

Query:  SVLNHPAFQADPLGAMYLHLKSTQPVEEPKKKKTNKNGSKKRKEKKSKATARPSSMEM
        +VLNHP FQADPL A+ LHL+ TQP+EEP KKKTNKNGSKKRKEKKSKA+ RPSSMEM
Subjt:  SVLNHPAFQADPLGAMYLHLKSTQPVEEPKKKKTNKNGSKKRKEKKSKATARPSSMEM

TrEMBL top hitse value%identityAlignment
A0A0A0L113 Uncharacterized protein5.6e-5478.48Show/hide
Query:  MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTITKKK-LRRRKRDLKVFDLSSLSESLAELKAPKQKASAAELKLNCKSRLKFLLKEKKQMA
        MGKPVS+SD KSKAE K+EKKVQFY+RVGET+  L+AQK+ITKKK  RRRKRDLK FDLS+LSE L  L+A KQK SAAELKLNCKSRLKF+LKE+KQM 
Subjt:  MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTITKKK-LRRRKRDLKVFDLSSLSESLAELKAPKQKASAAELKLNCKSRLKFLLKEKKQMA

Query:  SVLNHPAFQADPLGAMYLHLKSTQPVEEPKKKKTNKNGSKKRKEKKSKATARPSSMEM
        +VLNHP FQADPL A+ LHL+ TQP+EEPKKKK NKNGSKKRKEKKSKA+A+PSSMEM
Subjt:  SVLNHPAFQADPLGAMYLHLKSTQPVEEPKKKKTNKNGSKKRKEKKSKATARPSSMEM

A0A5D3BQL6 Putative ribosome biogenesis protein slx9-like2.8e-5378.48Show/hide
Query:  MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTITKKK-LRRRKRDLKVFDLSSLSESLAELKAPKQKASAAELKLNCKSRLKFLLKEKKQMA
        MGKPVS+SD KSKAE K+EKKVQFY+RVGE++A L+AQK+ITKKK  RRRKRDLK FDLS+LSE L  L+A KQK SAAELKLNCKSRLKF+LKE+KQM 
Subjt:  MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTITKKK-LRRRKRDLKVFDLSSLSESLAELKAPKQKASAAELKLNCKSRLKFLLKEKKQMA

Query:  SVLNHPAFQADPLGAMYLHLKSTQPVEEPKKKKTNKNGSKKRKEKKSKATARPSSMEM
        +VLNHP FQADPL A+ LHL+ TQP EEPKKKK NKNGSKKRKEKK KA+ARPSSMEM
Subjt:  SVLNHPAFQADPLGAMYLHLKSTQPVEEPKKKKTNKNGSKKRKEKKSKATARPSSMEM

A0A6J1CYW4 putative ribosome biogenesis protein slx9-like isoform X11.5e-5175.8Show/hide
Query:  MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTITKK--KLRRRKRDLKVFDLSSLSESLAELKAPKQKASAAELKLNCKSRLKFLLKEKKQM
        MGKPVS+SDSKSKAE K++KKVQFY+RVGETV AL+AQKTI+K+  K R RK+ LK FDL++LSE L  L+APKQK+SAAELK+NCKSRLKF+LKE+KQM
Subjt:  MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTITKK--KLRRRKRDLKVFDLSSLSESLAELKAPKQKASAAELKLNCKSRLKFLLKEKKQM

Query:  ASVLNHPAFQADPLGAMYLHLKSTQPVEEPKKKKTNKNGSKKRKEKKSKATARPSSM
         +VLNHPAFQADPL A++LHL+STQPVEEPKKK TNKNGSKKRKEKK KA+A P  M
Subjt:  ASVLNHPAFQADPLGAMYLHLKSTQPVEEPKKKKTNKNGSKKRKEKKSKATARPSSM

A0A6J1E5M8 putative ribosome biogenesis protein slx9-like1.3e-5881.53Show/hide
Query:  MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTITKKKLRRRKRDLKVFDLSSLSESLAELKAPKQKASAAELKLNCKSRLKFLLKEKKQMAS
        MGKP S+SDSKSKAE K+EKK+QFY+RVGET+A L+AQKTITKKKLRRRKRDLK FDL++LSE L  LKAPKQK S  ELK+NCKSRLKF+LKE KQM +
Subjt:  MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTITKKKLRRRKRDLKVFDLSSLSESLAELKAPKQKASAAELKLNCKSRLKFLLKEKKQMAS

Query:  VLNHPAFQADPLGAMYLHLKSTQPVEEPKKKKTNKNGSKKRKEKKSKATARPSSMEM
        VLNHPAFQADPLGA++LHL+STQPVEE KKKKTN+NGSKKRKEKKSKATA+PSSMEM
Subjt:  VLNHPAFQADPLGAMYLHLKSTQPVEEPKKKKTNKNGSKKRKEKKSKATARPSSMEM

A0A6J1JDX4 putative ribosome biogenesis protein slx9-like3.8e-5880.89Show/hide
Query:  MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTITKKKLRRRKRDLKVFDLSSLSESLAELKAPKQKASAAELKLNCKSRLKFLLKEKKQMAS
        MGKP S+SDSKSKAE K+EKK+QFY+RVGET+A L+AQKTITKKKLRRRKRDLK FDL++LSE L  LK PKQK S  ELK+NCKSRLKF+LKE KQM +
Subjt:  MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTITKKKLRRRKRDLKVFDLSSLSESLAELKAPKQKASAAELKLNCKSRLKFLLKEKKQMAS

Query:  VLNHPAFQADPLGAMYLHLKSTQPVEEPKKKKTNKNGSKKRKEKKSKATARPSSMEM
        VLNHPAFQADPLGA++LHL+STQPVEE KKKKTN+NGSKKRKEKKSKATA+PSSMEM
Subjt:  VLNHPAFQADPLGAMYLHLKSTQPVEEPKKKKTNKNGSKKRKEKKSKATARPSSMEM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G01640.1 unknown protein1.9e-3054Show/hide
Query:  MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTI-TKKKLRRRKRDLKVFDLSSLSESLAELKAPKQKA-SAAELKLNCKSRLKFLLKEKKQM
        MGKP   S+  +K++ K+EKK+QFY +V +TV +LS QK I  KKK+R R++ LK +DL++LSE L E  A ++ A  A ELK+NCK R K +L E +++
Subjt:  MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTI-TKKKLRRRKRDLKVFDLSSLSESLAELKAPKQKA-SAAELKLNCKSRLKFLLKEKKQM

Query:  ASVLNHPAFQADPLGAMYLHLKSTQ-PVEEPKKKKTNKNGSKKRKEKKSK
          VL+HPAFQADP+G+++ HL S Q PVEE  KKKTN NGSKKR +KK K
Subjt:  ASVLNHPAFQADPLGAMYLHLKSTQ-PVEEPKKKKTNKNGSKKRKEKKSK

AT2G01640.2 unknown protein1.9e-3054Show/hide
Query:  MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTI-TKKKLRRRKRDLKVFDLSSLSESLAELKAPKQKA-SAAELKLNCKSRLKFLLKEKKQM
        MGKP   S+  +K++ K+EKK+QFY +V +TV +LS QK I  KKK+R R++ LK +DL++LSE L E  A ++ A  A ELK+NCK R K +L E +++
Subjt:  MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTI-TKKKLRRRKRDLKVFDLSSLSESLAELKAPKQKA-SAAELKLNCKSRLKFLLKEKKQM

Query:  ASVLNHPAFQADPLGAMYLHLKSTQ-PVEEPKKKKTNKNGSKKRKEKKSK
          VL+HPAFQADP+G+++ HL S Q PVEE  KKKTN NGSKKR +KK K
Subjt:  ASVLNHPAFQADPLGAMYLHLKSTQ-PVEEPKKKKTNKNGSKKRKEKKSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAAACCAGTCTCTCAGTCGGATTCGAAATCTAAAGCCGAATGCAAGTATGAAAAGAAGGTCCAGTTTTATAAGAGAGTTGGAGAAACTGTTGCTGCCTTAAGTGC
TCAAAAGACTATTACTAAGAAGAAACTTCGAAGACGTAAAAGGGACTTGAAGGTTTTCGATCTTTCTTCTCTATCAGAGTCTCTTGCTGAATTGAAGGCTCCTAAACAAA
AAGCTTCTGCAGCCGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAGTTTTTATTGAAGGAAAAAAAGCAAATGGCTTCAGTCCTTAATCACCCTGCATTCCAGGCAGAC
CCCTTGGGAGCTATGTATCTACATTTAAAGAGTACACAACCAGTTGAGGAACCGAAGAAAAAGAAGACGAACAAAAATGGGAGCAAGAAAAGGAAAGAGAAAAAGTCCAA
AGCCACTGCAAGACCTTCATCTATGGAGATGTGA
mRNA sequenceShow/hide mRNA sequence
ATCACATCTTCTGGTTTTCTTAAACCCTATTTCCTCGACGGAGTTGAGATCGCCGATTCTCCGAGTGTGAATGCTCGGAACCAGAAGTTTTCGATTGGAGCATTGGCGGG
CTGGAGGTTTCTAATCAGAAAGCTTGCAAGTTGTAGTTATGGGCAAACCAGTCTCTCAGTCGGATTCGAAATCTAAAGCCGAATGCAAGTATGAAAAGAAGGTCCAGTTT
TATAAGAGAGTTGGAGAAACTGTTGCTGCCTTAAGTGCTCAAAAGACTATTACTAAGAAGAAACTTCGAAGACGTAAAAGGGACTTGAAGGTTTTCGATCTTTCTTCTCT
ATCAGAGTCTCTTGCTGAATTGAAGGCTCCTAAACAAAAAGCTTCTGCAGCCGAGTTAAAACTAAATTGCAAGTCTAGGCTAAAGTTTTTATTGAAGGAAAAAAAGCAAA
TGGCTTCAGTCCTTAATCACCCTGCATTCCAGGCAGACCCCTTGGGAGCTATGTATCTACATTTAAAGAGTACACAACCAGTTGAGGAACCGAAGAAAAAGAAGACGAAC
AAAAATGGGAGCAAGAAAAGGAAAGAGAAAAAGTCCAAAGCCACTGCAAGACCTTCATCTATGGAGATGTGACTAATCTCTCGTGGGCCTTCTCTTGCCATTTTAAGCCA
ATAGATTTTTTTGTTTGGCTAATCTGAGCAGAACTCAACTGGACGAGGTAACCAAGCATACCCCGATGATCAAGAGGTCAAAAGTTCATGTTGTAGCTTGCTTAATATGC
TAATGATCATTTTAATTTGTCAAGTATCTTGATTTTGTTATCAATCCGTCCGTTCATAGCTAAAGGAAGAATCTCATTTGATCACATTAGAGGCTTCTTGTTTTTGATTG
CACAGGCAACCAAACAGTCTCGGGAATCTTTGTGGAGCAATCGTTTGTTATTATTCAGAGGAAGAGAAATTGGTCAACTAGTCATTTTCCACAATATTATATATTTTCAA
AATTATTTTCGATATTCCAATTAATCAACAATTTATTTCACGAATGTTGTGATTTTACTCCACAAGTCGGT
Protein sequenceShow/hide protein sequence
MGKPVSQSDSKSKAECKYEKKVQFYKRVGETVAALSAQKTITKKKLRRRKRDLKVFDLSSLSESLAELKAPKQKASAAELKLNCKSRLKFLLKEKKQMASVLNHPAFQAD
PLGAMYLHLKSTQPVEEPKKKKTNKNGSKKRKEKKSKATARPSSMEM