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Tan0010188 (gene) of Snake gourd v1 genome

Gene IDTan0010188
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG09:65338068..65340418
RNA-Seq ExpressionTan0010188
SyntenyTan0010188
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]3.2e-0764Show/hide
Query:  LSQSVGNLNFTSFL-LSTLSVLRDNNAIVSAGRAPLRQRRWECWAGPTTS
        LS  + +  +T ++ L TL+VLRDN+AIVSAGR PLRQR+WECWA PTTS
Subjt:  LSQSVGNLNFTSFL-LSTLSVLRDNNAIVSAGRAPLRQRRWECWAGPTTS
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]7.2e-0781.08Show/hide
Query:  FLLSTLSVLRDNNAIVSAGRAPLRQRRWECWAGPTTS
        F LSTLSVL DN+A+VSAG+APLRQRRWEC  GPTTS
Subjt:  FLLSTLSVLRDNNAIVSAGRAPLRQRRWECWAGPTTS
KAA0040296.1 hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa]9.4e-0769.39Show/hide
Query:  SQSVGNLNFT-SFLLSTLSVLRDNNAIVSAGRAPLRQRRWECWAGPTTS
        S   G L+ T  F LSTLSVLR+N+A VSAGR PLRQRRWEC  GPTTS
Subjt:  SQSVGNLNFT-SFLLSTLSVLRDNNAIVSAGRAPLRQRRWECWAGPTTS
TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]7.2e-0781.08Show/hide
Query:  FLLSTLSVLRDNNAIVSAGRAPLRQRRWECWAGPTTS
        F LSTLSVL DN+A+VSAG+APLRQRRWEC  GPTTS
Subjt:  FLLSTLSVLRDNNAIVSAGRAPLRQRRWECWAGPTTS
TYK27262.1 hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa]1.6e-0681.08Show/hide
Query:  FLLSTLSVLRDNNAIVSAGRAPLRQRRWECWAGPTTS
        F LSTLSVLR+N+A VSAGR PLRQRRWEC  GPTTS
Subjt:  FLLSTLSVLRDNNAIVSAGRAPLRQRRWECWAGPTTS
TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein1.6e-0764Show/hide
Query:  LSQSVGNLNFTSFL-LSTLSVLRDNNAIVSAGRAPLRQRRWECWAGPTTS
        LS  + +  +T ++ L TL+VLRDN+AIVSAGR PLRQR+WECWA PTTS
Subjt:  LSQSVGNLNFTSFL-LSTLSVLRDNNAIVSAGRAPLRQRRWECWAGPTTS
A0A5A7T7M6 Reverse transcriptase3.5e-0781.08Show/hide
Query:  FLLSTLSVLRDNNAIVSAGRAPLRQRRWECWAGPTTS
        F LSTLSVL DN+A+VSAG+APLRQRRWEC  GPTTS
Subjt:  FLLSTLSVLRDNNAIVSAGRAPLRQRRWECWAGPTTS
A0A5A7TDY3 Uncharacterized protein4.5e-0769.39Show/hide
Query:  SQSVGNLNFT-SFLLSTLSVLRDNNAIVSAGRAPLRQRRWECWAGPTTS
        S   G L+ T  F LSTLSVLR+N+A VSAGR PLRQRRWEC  GPTTS
Subjt:  SQSVGNLNFT-SFLLSTLSVLRDNNAIVSAGRAPLRQRRWECWAGPTTS
A0A5D3BTP3 Reverse transcriptase3.5e-0781.08Show/hide
Query:  FLLSTLSVLRDNNAIVSAGRAPLRQRRWECWAGPTTS
        F LSTLSVL DN+A+VSAG+APLRQRRWEC  GPTTS
Subjt:  FLLSTLSVLRDNNAIVSAGRAPLRQRRWECWAGPTTS
A0A5D3DUS7 Uncharacterized protein7.7e-0781.08Show/hide
Query:  FLLSTLSVLRDNNAIVSAGRAPLRQRRWECWAGPTTS
        F LSTLSVLR+N+A VSAGR PLRQRRWEC  GPTTS
Subjt:  FLLSTLSVLRDNNAIVSAGRAPLRQRRWECWAGPTTS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGGAAAAAAGCAGAATGGAAAGAAGGAGAATGAAAGATGCATTAAGAGAGAAAATGAAGTTGTTTTTAGGGAAGAAGCTTTCGAGGTATTTTTGAGTCAATCTGT
TGGAAATCTCAATTTTACGTCATTTCTATTGTCGACGTTGAGTGTACTCCGTGACAACAACGCTATCGTGAGTGCTGGACGGGCCCCACTACGACAAAGACGATGGGAGT
GTTGGGCGGGCCCCACTACATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGGAAAAAAGCAGAATGGAAAGAAGGAGAATGAAAGATGCATTAAGAGAGAAAATGAAGTTGTTTTTAGGGAAGAAGCTTTCGAGGTATTTTTGAGTCAATCTGT
TGGAAATCTCAATTTTACGTCATTTCTATTGTCGACGTTGAGTGTACTCCGTGACAACAACGCTATCGTGAGTGCTGGACGGGCCCCACTACGACAAAGACGATGGGAGT
GTTGGGCGGGCCCCACTACATCGTAG
Protein sequenceShow/hide protein sequence
MKGKKQNGKKENERCIKRENEVVFREEAFEVFLSQSVGNLNFTSFLLSTLSVLRDNNAIVSAGRAPLRQRRWECWAGPTTS