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Tan0010211 (gene) of Snake gourd v1 genome

Gene IDTan0010211
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptiontranscription factor RADIALIS-like
Genome locationLG05:16011561..16012520
RNA-Seq ExpressionTan0010211
SyntenyTan0010211
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571113.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia]1.6e-3684.16Show/hide
Query:  MASISSSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAV-GGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQRYPL
        MAS+SSS  S SWTPKQNKAFERALAVFDKDTPDRWLNVA AV GGKTPDEVK HFDLLVEDV HIESG VPFPNY SS+AS S TSN NINDQEQRY  
Subjt:  MASISSSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAV-GGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQRYPL

Query:  K
        K
Subjt:  K

KAG6571117.1 Protein RADIALIS-like 2, partial [Cucurbita argyrosperma subsp. sororia]3.0e-3585.57Show/hide
Query:  MASISSSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAV-GGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR
        MAS+SSS  S SWTPKQNKAFERALAVFDKDTPDRWLNVA AV GGKTPDEVK HFDLLVEDV HIESG VPFPNY SS+AS S TSN NINDQEQR
Subjt:  MASISSSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAV-GGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR

XP_022944318.1 protein RADIALIS-like 2 [Cucurbita moschata]1.7e-3585.57Show/hide
Query:  MASISSSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAV-GGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR
        MAS++SS  S SWTPKQNKAFERALAVFDKDTPDRWLNVA AV GGKTPDEVK HFDLLVEDV HIESG VPFPNY SS+ASAS TSN NINDQEQR
Subjt:  MASISSSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAV-GGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR

XP_023513343.1 protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo]4.6e-3685.57Show/hide
Query:  MASISSSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAV-GGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR
        MAS+SSS  S SWTPKQNKAFERALAVFDKDTPDRWLNVA AV GGKTPDEVK HFDLLVEDV HIESG VPFPNY SS+ASASETSN N++DQEQR
Subjt:  MASISSSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAV-GGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR

XP_038902123.1 protein RADIALIS-like 2 [Benincasa hispida]2.0e-3685.57Show/hide
Query:  MASISSSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAV-GGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR
        MASISSS DSGSWTP QNKAFERALAVFDKDTPDRWLNVANAV GGKT DEVKRHFDLLVEDV HIESGRVPFPNYTS+S  A+ + N N+NDQEQR
Subjt:  MASISSSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAV-GGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR

TrEMBL top hitse value%identityAlignment
A0A0A0LL58 MYB transcription factor MYB1421.0e-3384.54Show/hide
Query:  MASISSSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAV-GGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR
        MASISSS  S SWTP QNKAFERALAVFDKDTPDRWLNVA AV GGKTPDEVKRHFD LVEDV HIESGRVPFP YTSSS+S + TSN NI DQEQR
Subjt:  MASISSSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAV-GGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR

A0A1S3CDK8 protein RADIALIS-like 27.9e-3480.58Show/hide
Query:  MASISSSRD---SGSWTPKQNKAFERALAVFDKDTPDRWLNVANAV-GGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASAS---ETSNRNINDQ
        MASISSS     S SWTP QNKAFERALAVFDKDTPDRWLNVANAV GGKTPDEVKRHFD LVEDV HIESGRVPFP YTSSS+S+S    +SN NI DQ
Subjt:  MASISSSRD---SGSWTPKQNKAFERALAVFDKDTPDRWLNVANAV-GGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASAS---ETSNRNINDQ

Query:  EQR
        EQR
Subjt:  EQR

A0A6J1FXX9 protein RADIALIS-like 28.4e-3685.57Show/hide
Query:  MASISSSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAV-GGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR
        MAS++SS  S SWTPKQNKAFERALAVFDKDTPDRWLNVA AV GGKTPDEVK HFDLLVEDV HIESG VPFPNY SS+ASAS TSN NINDQEQR
Subjt:  MASISSSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAV-GGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR

A0A6J1G543 transcription factor RADIALIS-like4.2e-3582.29Show/hide
Query:  MASISSSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAVGGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR
        MASISSS DS SW+P QNKAFE ALAVFDKDTPDRWLNVA AVG KT DEVKRHF+LLVEDV HIESG VPFPNYTSSS+SA  TS+ NIN QEQR
Subjt:  MASISSSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAVGGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR

A0A6J1JBS7 protein RADIALIS-like 27.1e-3583.51Show/hide
Query:  MASISSSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAV-GGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR
        MAS+SSS  S SWTPK+NKAFERALAVFDKDTPDRWLNVA AV GGKTPDEVK HFDLLVEDV HIE G VPFPNY SS+ASA+ TSN NINDQEQR
Subjt:  MASISSSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAV-GGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 19.9e-2659.79Show/hide
Query:  MASIS-SSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAVGGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR
        MAS S SS+ SGSWT KQNKAFE+ALA +D+DTP+RW NVA  VGGKT +EVKRH++LLV+D+N IE+G VPFPNY +S       +N  ++ +E+R
Subjt:  MASIS-SSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAVGGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR

Q1A173 Protein RADIALIS-like 63.2e-2463.44Show/hide
Query:  SSSRDSGS-WTPKQNKAFERALAVFDKDTPDRWLNVANAVGGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR
        S+SR S S WT  QNK FERALAV+DKDTPDRW NVA AVGGKT +EVKRH+D+LVED+ +IE+GRVP PNY        E+++R+IND + R
Subjt:  SSSRDSGS-WTPKQNKAFERALAVFDKDTPDRWLNVANAVGGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR

Q58FS3 Transcription factor RADIALIS8.4e-2556.84Show/hide
Query:  ISSSRDSG-SWTPKQNKAFERALAVFDKDTPDRWLNVANAVGGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQRY
        ++S+R SG  W+ K+NKAFERALAV+DKDTPDRW NVA AV G+TP+EVK+H+++LVED+ +IESG+VPFPNY         T+  N+   E+R+
Subjt:  ISSSRDSG-SWTPKQNKAFERALAVFDKDTPDRWLNVANAVGGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQRY

Q6NNN0 Protein RADIALIS-like 37.9e-2366.67Show/hide
Query:  MASISSSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAVGGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSS
        MAS S S  S SWT K+NK FERALA +D+DTPDRW NVA AVGGK+ +EV+RH++LL+ DVN IESGR P PNY S+
Subjt:  MASISSSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAVGGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSS

Q9SIJ5 Protein RADIALIS-like 21.3e-2563.27Show/hide
Query:  MASIS-SSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAVGGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNR-NINDQEQR
        MAS S SS  SGSWT KQNKAFERALAV+D+DTPDRW NVA AVGGKTP+E KR +DLLV D+  IE+G VPFP+Y +++ +    SNR  + D+E+R
Subjt:  MASIS-SSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAVGGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNR-NINDQEQR

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.1e-2257.29Show/hide
Query:  MASISSSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAVGGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR
        MAS SS   S SWT KQNK FERALAV+DKDTPDRW NVA AVG K+ +EVKRH+D+LVED+ +IE   VP P Y +       + +R I+D + R
Subjt:  MASISSSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAVGGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR

AT1G75250.1 RAD-like 67.0e-2761Show/hide
Query:  SSSRDSGS-WTPKQNKAFERALAVFDKDTPDRWLNVANAVGGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQRYPLKFSF
        S+SR S S WT  QNK FERALAV+DKDTPDRW NVA AVGGKT +EVKRH+D+LVED+ +IE+GRVP PNY        E+++R+IND + RY  K+ +
Subjt:  SSSRDSGS-WTPKQNKAFERALAVFDKDTPDRWLNVANAVGGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQRYPLKFSF

AT1G75250.2 RAD-like 62.3e-2563.44Show/hide
Query:  SSSRDSGS-WTPKQNKAFERALAVFDKDTPDRWLNVANAVGGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR
        S+SR S S WT  QNK FERALAV+DKDTPDRW NVA AVGGKT +EVKRH+D+LVED+ +IE+GRVP PNY        E+++R+IND + R
Subjt:  SSSRDSGS-WTPKQNKAFERALAVFDKDTPDRWLNVANAVGGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR

AT2G21650.1 Homeodomain-like superfamily protein9.2e-2763.27Show/hide
Query:  MASIS-SSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAVGGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNR-NINDQEQR
        MAS S SS  SGSWT KQNKAFERALAV+D+DTPDRW NVA AVGGKTP+E KR +DLLV D+  IE+G VPFP+Y +++ +    SNR  + D+E+R
Subjt:  MASIS-SSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAVGGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNR-NINDQEQR

AT4G39250.1 RAD-like 17.0e-2759.79Show/hide
Query:  MASIS-SSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAVGGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR
        MAS S SS+ SGSWT KQNKAFE+ALA +D+DTP+RW NVA  VGGKT +EVKRH++LLV+D+N IE+G VPFPNY +S       +N  ++ +E+R
Subjt:  MASIS-SSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAVGGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATCTCCTCCTCTCGTGACTCTGGCTCTTGGACTCCCAAACAAAACAAAGCCTTTGAAAGGGCTTTGGCTGTCTTTGACAAGGACACCCCTGATCGCTGGCT
CAATGTCGCCAACGCCGTCGGCGGTAAGACCCCCGATGAAGTCAAGAGACATTTCGACCTTCTCGTCGAGGATGTCAACCACATTGAATCCGGTCGCGTCCCCTTCCCTA
ATTACACCTCCTCCTCCGCCTCCGCCTCTGAAACCTCCAATCGCAACATCAACGACCAAGAACAAAGGTACCCTCTTAAATTTTCTTTTTGGCGTGCCACTCACGTGCCT
TCTTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCATCTCCTCCTCTCGTGACTCTGGCTCTTGGACTCCCAAACAAAACAAAGCCTTTGAAAGGGCTTTGGCTGTCTTTGACAAGGACACCCCTGATCGCTGGCT
CAATGTCGCCAACGCCGTCGGCGGTAAGACCCCCGATGAAGTCAAGAGACATTTCGACCTTCTCGTCGAGGATGTCAACCACATTGAATCCGGTCGCGTCCCCTTCCCTA
ATTACACCTCCTCCTCCGCCTCCGCCTCTGAAACCTCCAATCGCAACATCAACGACCAAGAACAAAGGTACCCTCTTAAATTTTCTTTTTGGCGTGCCACTCACGTGCCT
TCTTCATAG
Protein sequenceShow/hide protein sequence
MASISSSRDSGSWTPKQNKAFERALAVFDKDTPDRWLNVANAVGGKTPDEVKRHFDLLVEDVNHIESGRVPFPNYTSSSASASETSNRNINDQEQRYPLKFSFWRATHVP
SS