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Tan0010243 (gene) of Snake gourd v1 genome

Gene IDTan0010243
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG08:12290144..12290527
RNA-Seq ExpressionTan0010243
SyntenyTan0010243
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3615230.1 hypothetical protein FXO37_35592 [Capsicum annuum]2.8e-2657.14Show/hide
Query:  KIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNILANVHGIST
        K  ++KFDG +NF LWQ+QVKDVLIQ GLHKALK RL+ G  +K S           SS+ SKK  I+DEEW+ELD++  S IRL   KN+LANV G+ST
Subjt:  KIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNILANVHGIST

Query:  AKEVWEKFETMYQEKNISN
         KE+WEK E +YQ K+ISN
Subjt:  AKEVWEKFETMYQEKNISN

KAF3622233.1 hypothetical protein FXO38_31400 [Capsicum annuum]1.8e-2557.14Show/hide
Query:  KIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNILANVHGIST
        K  ++KFDG +NF +WQ+QVKDVLIQ GLHKALK R +    EK + D    E    SS+ S+KS ISDEEW+ELD++  S IRL   KN+LANV G+ST
Subjt:  KIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNILANVHGIST

Query:  AKEVWEKFETMYQEKNISN
         KE+WEK E +YQ K+ISN
Subjt:  AKEVWEKFETMYQEKNISN

KAF5463231.1 hypothetical protein F2P56_019161 [Juglans regia]1.1e-2552.38Show/hide
Query:  SSFMSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNILA
        S   + ++  V+KFDG +NF LWQ+QVKDVLIQ GLHKALKGR +     ++SSD    + +        +S +SDE+W++LDLR  SAIRL   KN+LA
Subjt:  SSFMSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNILA

Query:  NVHGISTAKEVWEKFETMYQEKNISN
        N+HGISTAK++WEK E +YQ K +SN
Subjt:  NVHGISTAKEVWEKFETMYQEKNISN

KAF7802225.1 cytochrome p450 [Senna tora]2.2e-2654.33Show/hide
Query:  MSSFMSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNIL
        MS F S VK  V+KFDG +NF LWQ+QVKDVLIQ GLHKAL+G++S    EK                   +S++SD +W+ELDLR  S IRL+  KN+L
Subjt:  MSSFMSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNIL

Query:  ANVHGISTAKEVWEKFETMYQEKNISN
        ANV GISTAKE+W+K E +YQ K ISN
Subjt:  ANVHGISTAKEVWEKFETMYQEKNISN

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]1.2e-4072.44Show/hide
Query:  MSSFMSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNIL
        MS FMS VKI V+KFDGM+NF LWQ+QVKDVLIQ  LHKALKGR S G  EKLS D GP+ESSGGSSRGSKKS++S E+W+E+DLR  SAIR +  KNIL
Subjt:  MSSFMSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNIL

Query:  ANVHGISTAKEVWEKFETMYQEKNISN
        ANVH ISTAKE+WEK E +YQ K ISN
Subjt:  ANVHGISTAKEVWEKFETMYQEKNISN

TrEMBL top hitse value%identityAlignment
A0A2G2YJH4 Uncharacterized protein1.3e-2454.84Show/hide
Query:  FMSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNILANV
        +M   K  ++KFDG +NF LWQ+QVKDVLIQ GLHKALK R + G   K   D    E    SS  S+KS ISDEEW+ELD++V S IRL   K +L NV
Subjt:  FMSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNILANV

Query:  HGISTAKEVWEKFETMYQEKNISN
         G+ST K++WEK E +YQ K+ISN
Subjt:  HGISTAKEVWEKFETMYQEKNISN

A0A2G3AMB5 Uncharacterized protein1.4e-2353.33Show/hide
Query:  KIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIES-SGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNILANVHGIS
        K  ++KFDG +NF LWQ+QVKDVLIQ GL+KALK        E+ +S+ G  +S    SS+ S+K  ISDEEW+ELD++  S IRL   KN+LANV G+S
Subjt:  KIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIES-SGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNILANVHGIS

Query:  TAKEVWEKFETMYQEKNISN
        T KE+WEK E +YQ K++ N
Subjt:  TAKEVWEKFETMYQEKNISN

A0A444X3K2 Uncharacterized protein4.1e-2350.39Show/hide
Query:  MSSFMSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNIL
        +S + S VK+ ++KFDG +NF LWQ+QVKDVLIQ GLHKALK                            K S I DEEW+ELDLR  SAIRL   KN+L
Subjt:  MSSFMSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNIL

Query:  ANVHGISTAKEVWEKFETMYQEKNISN
        ANV G+  AKE+W+K E +YQ K ISN
Subjt:  ANVHGISTAKEVWEKFETMYQEKNISN

A0A6A2YS90 Transcription initiation factor IIA subunit 22.1e-2250.41Show/hide
Query:  MSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNILANVH
        + L +  ++KFDG +NF LWQ+QVKD+LIQ GL+KALKG+ +   L +      P +SSG       KS +S+EEW+ELD+R  S IRL   KN+LANV 
Subjt:  MSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNILANVH

Query:  GISTAKEVWEKFETMYQEKNISN
          S+ KE+WEK E MYQ K++SN
Subjt:  GISTAKEVWEKFETMYQEKNISN

A0A6J1CG82 uncharacterized protein LOC1110105215.8e-4172.44Show/hide
Query:  MSSFMSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNIL
        MS FMS VKI V+KFDGM+NF LWQ+QVKDVLIQ  LHKALKGR S G  EKLS D GP+ESSGGSSRGSKKS++S E+W+E+DLR  SAIR +  KNIL
Subjt:  MSSFMSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNIL

Query:  ANVHGISTAKEVWEKFETMYQEKNISN
        ANVH ISTAKE+WEK E +YQ K ISN
Subjt:  ANVHGISTAKEVWEKFETMYQEKNISN

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-947.8e-1132.52Show/hide
Query:  MSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNILANVH
        MS VK  V KF+G   F  WQ +++D+LIQ GLHK L                  ++S        K   +  E+W +LD R  SAIRL+ + +++ N+ 
Subjt:  MSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNILANVH

Query:  GISTAKEVWEKFETMYQEKNISN
           TA+ +W + E++Y  K ++N
Subjt:  GISTAKEVWEKFETMYQEKNISN

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGTTTTATGAGTCTAGTAAAGATTGGCGTGGATAAATTTGACGGAATGATGAACTTTTGCTTGTGGCAAATGCAAGTCAAAGATGTGCTGATACAATTTGGGTT
ACACAAGGCTTTGAAGGGAAGATTGAGTTGTGGTGTTCTTGAAAAGTTAAGCAGTGATTGTGGTCCAATAGAGTCTAGTGGTGGTTCCAGCAGAGGTTCTAAGAAGTCCA
ACATAAGTGATGAAGAATGGGATGAATTAGATTTGAGAGTTACAAGTGCAATAAGATTAAATTTCACTAAGAATATTCTTGCAAATGTGCATGGAATTTCGACAGCCAAA
GAGGTTTGGGAGAAGTTTGAAACGATGTATCAGGAAAAGAACATCTCAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAAGTTTTATGAGTCTAGTAAAGATTGGCGTGGATAAATTTGACGGAATGATGAACTTTTGCTTGTGGCAAATGCAAGTCAAAGATGTGCTGATACAATTTGGGTT
ACACAAGGCTTTGAAGGGAAGATTGAGTTGTGGTGTTCTTGAAAAGTTAAGCAGTGATTGTGGTCCAATAGAGTCTAGTGGTGGTTCCAGCAGAGGTTCTAAGAAGTCCA
ACATAAGTGATGAAGAATGGGATGAATTAGATTTGAGAGTTACAAGTGCAATAAGATTAAATTTCACTAAGAATATTCTTGCAAATGTGCATGGAATTTCGACAGCCAAA
GAGGTTTGGGAGAAGTTTGAAACGATGTATCAGGAAAAGAACATCTCAAATTAG
Protein sequenceShow/hide protein sequence
MSSFMSLVKIGVDKFDGMMNFCLWQMQVKDVLIQFGLHKALKGRLSCGVLEKLSSDCGPIESSGGSSRGSKKSNISDEEWDELDLRVTSAIRLNFTKNILANVHGISTAK
EVWEKFETMYQEKNISN