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Tan0010318 (gene) of Snake gourd v1 genome

Gene IDTan0010318
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG01:39306862..39307460
RNA-Seq ExpressionTan0010318
SyntenyTan0010318
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-4265.45Show/hide
Query:  MKEGSSVREHVLDMMTHFNLAEMNGASIDESSKVSFILETFSKSFLQFRSNAVMNKISYTLTTLLNELQNFQSLMRIRAPECEANVA--YRSYHWGSTSR
        M EG+SVREHVL+MM HFN+AEMNGA IDE+S+VSFILE+  +SFLQFRSNAVMNKI+YTLTTLLNELQ F+SLM+I+  + EANVA   R +H GSTS 
Subjt:  MKEGSSVREHVLDMMTHFNLAEMNGASIDESSKVSFILETFSKSFLQFRSNAVMNKISYTLTTLLNELQNFQSLMRIRAPECEANVA--YRSYHWGSTSR

Query:  TK--PVAPSHPKGKKKKMKRG-KADRAAAQKGKKVKEVAEKGKCFHCNGDGHWKRNCSKLHAERK
        TK  P +  + K KKKK  +G KA+ AAA+  KK K  A KG CFHCN +GHWKRNC K  AE+K
Subjt:  TK--PVAPSHPKGKKKKMKRG-KADRAAAQKGKKVKEVAEKGKCFHCNGDGHWKRNCSKLHAERK

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-4265.45Show/hide
Query:  MKEGSSVREHVLDMMTHFNLAEMNGASIDESSKVSFILETFSKSFLQFRSNAVMNKISYTLTTLLNELQNFQSLMRIRAPECEANVA--YRSYHWGSTSR
        M EG+SVREHVL+MM HFN+AEMNGA IDE+S+VSFILE+  +SFLQFRSNAVMNKI+YTLTTLLNELQ F+SLM+I+  + EANVA   R +H GSTS 
Subjt:  MKEGSSVREHVLDMMTHFNLAEMNGASIDESSKVSFILETFSKSFLQFRSNAVMNKISYTLTTLLNELQNFQSLMRIRAPECEANVA--YRSYHWGSTSR

Query:  TK--PVAPSHPKGKKKKMKRG-KADRAAAQKGKKVKEVAEKGKCFHCNGDGHWKRNCSKLHAERK
        TK  P +  + K KKKK  +G KA+ AAA+  KK K  A KG CFHCN +GHWKRNC K  AE+K
Subjt:  TK--PVAPSHPKGKKKKMKRG-KADRAAAQKGKKVKEVAEKGKCFHCNGDGHWKRNCSKLHAERK

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-4265.45Show/hide
Query:  MKEGSSVREHVLDMMTHFNLAEMNGASIDESSKVSFILETFSKSFLQFRSNAVMNKISYTLTTLLNELQNFQSLMRIRAPECEANVA--YRSYHWGSTSR
        M EG+SVREHVL+MM HFN+AEMNGA IDE+S+VSFILE+  +SFLQFRSNAVMNKI+YTLTTLLNELQ F+SLM+I+  + EANVA   R +H GSTS 
Subjt:  MKEGSSVREHVLDMMTHFNLAEMNGASIDESSKVSFILETFSKSFLQFRSNAVMNKISYTLTTLLNELQNFQSLMRIRAPECEANVA--YRSYHWGSTSR

Query:  TK--PVAPSHPKGKKKKMKRG-KADRAAAQKGKKVKEVAEKGKCFHCNGDGHWKRNCSKLHAERK
        TK  P +  + K KKKK  +G KA+ AAA+  KK K  A KG CFHCN +GHWKRNC K  AE+K
Subjt:  TK--PVAPSHPKGKKKKMKRG-KADRAAAQKGKKVKEVAEKGKCFHCNGDGHWKRNCSKLHAERK

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-4265.45Show/hide
Query:  MKEGSSVREHVLDMMTHFNLAEMNGASIDESSKVSFILETFSKSFLQFRSNAVMNKISYTLTTLLNELQNFQSLMRIRAPECEANVA--YRSYHWGSTSR
        M EG+SVREHVL+MM HFN+AEMNGA IDE+S+VSFILE+  +SFLQFRSNAVMNKI+YTLTTLLNELQ F+SLM+I+  + EANVA   R +H GSTS 
Subjt:  MKEGSSVREHVLDMMTHFNLAEMNGASIDESSKVSFILETFSKSFLQFRSNAVMNKISYTLTTLLNELQNFQSLMRIRAPECEANVA--YRSYHWGSTSR

Query:  TK--PVAPSHPKGKKKKMKRG-KADRAAAQKGKKVKEVAEKGKCFHCNGDGHWKRNCSKLHAERK
        TK  P +  + K KKKK  +G KA+ AAA+  KK K  A KG CFHCN +GHWKRNC K  AE+K
Subjt:  TK--PVAPSHPKGKKKKMKRG-KADRAAAQKGKKVKEVAEKGKCFHCNGDGHWKRNCSKLHAERK

TYK28896.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-4265.06Show/hide
Query:  MKEGSSVREHVLDMMTHFNLAEMNGASIDESSKVSFILETFSKSFLQFRSNAVMNKISYTLTTLLNELQNFQSLMRIRAPECEANVA--YRSYHWGSTSR
        M EG+SVREHVL+MM HFN+AEMNGA IDE+S+VSFIL++  +SFLQFRSNAVMNKI+YTLTTLLNELQNF+SLM+I+  + EANVA   R +H GST  
Subjt:  MKEGSSVREHVLDMMTHFNLAEMNGASIDESSKVSFILETFSKSFLQFRSNAVMNKISYTLTTLLNELQNFQSLMRIRAPECEANVA--YRSYHWGSTSR

Query:  TKPVAPSHPKGKKKKMKRG----KADRAAAQKGKKVKEVAEKGKCFHCNGDGHWKRNCSKLHAERK
        TK V PS    KK K K+G    KA+ AAA+  KK K  A KG CFHCN +GHWKRNC K  AE+K
Subjt:  TKPVAPSHPKGKKKKMKRG----KADRAAAQKGKKVKEVAEKGKCFHCNGDGHWKRNCSKLHAERK

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein8.0e-4365.45Show/hide
Query:  MKEGSSVREHVLDMMTHFNLAEMNGASIDESSKVSFILETFSKSFLQFRSNAVMNKISYTLTTLLNELQNFQSLMRIRAPECEANVA--YRSYHWGSTSR
        M EG+SVREHVL+MM HFN+AEMNGA IDE+S+VSFILE+  +SFLQFRSNAVMNKI+YTLTTLLNELQ F+SLM+I+  + EANVA   R +H GSTS 
Subjt:  MKEGSSVREHVLDMMTHFNLAEMNGASIDESSKVSFILETFSKSFLQFRSNAVMNKISYTLTTLLNELQNFQSLMRIRAPECEANVA--YRSYHWGSTSR

Query:  TK--PVAPSHPKGKKKKMKRG-KADRAAAQKGKKVKEVAEKGKCFHCNGDGHWKRNCSKLHAERK
        TK  P +  + K KKKK  +G KA+ AAA+  KK K  A KG CFHCN +GHWKRNC K  AE+K
Subjt:  TK--PVAPSHPKGKKKKMKRG-KADRAAAQKGKKVKEVAEKGKCFHCNGDGHWKRNCSKLHAERK

A0A5A7TU93 Gag/pol protein8.0e-4365.45Show/hide
Query:  MKEGSSVREHVLDMMTHFNLAEMNGASIDESSKVSFILETFSKSFLQFRSNAVMNKISYTLTTLLNELQNFQSLMRIRAPECEANVA--YRSYHWGSTSR
        M EG+SVREHVL+MM HFN+AEMNGA IDE+S+VSFILE+  +SFLQFRSNAVMNKI+YTLTTLLNELQ F+SLM+I+  + EANVA   R +H GSTS 
Subjt:  MKEGSSVREHVLDMMTHFNLAEMNGASIDESSKVSFILETFSKSFLQFRSNAVMNKISYTLTTLLNELQNFQSLMRIRAPECEANVA--YRSYHWGSTSR

Query:  TK--PVAPSHPKGKKKKMKRG-KADRAAAQKGKKVKEVAEKGKCFHCNGDGHWKRNCSKLHAERK
        TK  P +  + K KKKK  +G KA+ AAA+  KK K  A KG CFHCN +GHWKRNC K  AE+K
Subjt:  TK--PVAPSHPKGKKKKMKRG-KADRAAAQKGKKVKEVAEKGKCFHCNGDGHWKRNCSKLHAERK

A0A5A7V4M1 Gag/pol protein8.0e-4365.45Show/hide
Query:  MKEGSSVREHVLDMMTHFNLAEMNGASIDESSKVSFILETFSKSFLQFRSNAVMNKISYTLTTLLNELQNFQSLMRIRAPECEANVA--YRSYHWGSTSR
        M EG+SVREHVL+MM HFN+AEMNGA IDE+S+VSFILE+  +SFLQFRSNAVMNKI+YTLTTLLNELQ F+SLM+I+  + EANVA   R +H GSTS 
Subjt:  MKEGSSVREHVLDMMTHFNLAEMNGASIDESSKVSFILETFSKSFLQFRSNAVMNKISYTLTTLLNELQNFQSLMRIRAPECEANVA--YRSYHWGSTSR

Query:  TK--PVAPSHPKGKKKKMKRG-KADRAAAQKGKKVKEVAEKGKCFHCNGDGHWKRNCSKLHAERK
        TK  P +  + K KKKK  +G KA+ AAA+  KK K  A KG CFHCN +GHWKRNC K  AE+K
Subjt:  TK--PVAPSHPKGKKKKMKRG-KADRAAAQKGKKVKEVAEKGKCFHCNGDGHWKRNCSKLHAERK

A0A5D3CPJ6 Gag/pol protein8.0e-4365.45Show/hide
Query:  MKEGSSVREHVLDMMTHFNLAEMNGASIDESSKVSFILETFSKSFLQFRSNAVMNKISYTLTTLLNELQNFQSLMRIRAPECEANVA--YRSYHWGSTSR
        M EG+SVREHVL+MM HFN+AEMNGA IDE+S+VSFILE+  +SFLQFRSNAVMNKI+YTLTTLLNELQ F+SLM+I+  + EANVA   R +H GSTS 
Subjt:  MKEGSSVREHVLDMMTHFNLAEMNGASIDESSKVSFILETFSKSFLQFRSNAVMNKISYTLTTLLNELQNFQSLMRIRAPECEANVA--YRSYHWGSTSR

Query:  TK--PVAPSHPKGKKKKMKRG-KADRAAAQKGKKVKEVAEKGKCFHCNGDGHWKRNCSKLHAERK
        TK  P +  + K KKKK  +G KA+ AAA+  KK K  A KG CFHCN +GHWKRNC K  AE+K
Subjt:  TK--PVAPSHPKGKKKKMKRG-KADRAAAQKGKKVKEVAEKGKCFHCNGDGHWKRNCSKLHAERK

A0A5D3DYU3 Gag/pol protein6.1e-4365.06Show/hide
Query:  MKEGSSVREHVLDMMTHFNLAEMNGASIDESSKVSFILETFSKSFLQFRSNAVMNKISYTLTTLLNELQNFQSLMRIRAPECEANVA--YRSYHWGSTSR
        M EG+SVREHVL+MM HFN+AEMNGA IDE+S+VSFIL++  +SFLQFRSNAVMNKI+YTLTTLLNELQNF+SLM+I+  + EANVA   R +H GST  
Subjt:  MKEGSSVREHVLDMMTHFNLAEMNGASIDESSKVSFILETFSKSFLQFRSNAVMNKISYTLTTLLNELQNFQSLMRIRAPECEANVA--YRSYHWGSTSR

Query:  TKPVAPSHPKGKKKKMKRG----KADRAAAQKGKKVKEVAEKGKCFHCNGDGHWKRNCSKLHAERK
        TK V PS    KK K K+G    KA+ AAA+  KK K  A KG CFHCN +GHWKRNC K  AE+K
Subjt:  TKPVAPSHPKGKKKKMKRG----KADRAAAQKGKKVKEVAEKGKCFHCNGDGHWKRNCSKLHAERK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAAGGGTCGTCTGTCCGAGAACACGTTCTAGACATGATGACCCACTTTAATTTGGCGGAGATGAACGGGGCTTCAATCGACGAGTCGAGCAAGGTCAGCTTTAT
TTTGGAGACTTTTTCGAAGAGTTTCCTTCAGTTTCGTAGCAACGCTGTTATGAACAAGATAAGCTACACTCTGACTACCCTCCTTAATGAGCTACAGAACTTCCAGTCCT
TGATGAGGATCAGGGCACCGGAATGTGAGGCAAATGTTGCCTACAGGTCTTATCACTGGGGTTCCACCTCTAGGACTAAACCTGTTGCTCCTTCTCACCCGAAAGGGAAG
AAGAAGAAGATGAAGAGGGGTAAAGCTGACCGAGCTGCCGCCCAAAAGGGCAAGAAAGTCAAGGAAGTTGCAGAGAAAGGAAAGTGTTTCCACTGCAATGGGGACGGCCA
CTGGAAGAGAAACTGTTCCAAGTTACATGCCGAGAGGAAGAATCAAGGGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGAAGGGTCGTCTGTCCGAGAACACGTTCTAGACATGATGACCCACTTTAATTTGGCGGAGATGAACGGGGCTTCAATCGACGAGTCGAGCAAGGTCAGCTTTAT
TTTGGAGACTTTTTCGAAGAGTTTCCTTCAGTTTCGTAGCAACGCTGTTATGAACAAGATAAGCTACACTCTGACTACCCTCCTTAATGAGCTACAGAACTTCCAGTCCT
TGATGAGGATCAGGGCACCGGAATGTGAGGCAAATGTTGCCTACAGGTCTTATCACTGGGGTTCCACCTCTAGGACTAAACCTGTTGCTCCTTCTCACCCGAAAGGGAAG
AAGAAGAAGATGAAGAGGGGTAAAGCTGACCGAGCTGCCGCCCAAAAGGGCAAGAAAGTCAAGGAAGTTGCAGAGAAAGGAAAGTGTTTCCACTGCAATGGGGACGGCCA
CTGGAAGAGAAACTGTTCCAAGTTACATGCCGAGAGGAAGAATCAAGGGAATTGA
Protein sequenceShow/hide protein sequence
MKEGSSVREHVLDMMTHFNLAEMNGASIDESSKVSFILETFSKSFLQFRSNAVMNKISYTLTTLLNELQNFQSLMRIRAPECEANVAYRSYHWGSTSRTKPVAPSHPKGK
KKKMKRGKADRAAAQKGKKVKEVAEKGKCFHCNGDGHWKRNCSKLHAERKNQGN