| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0025358.1 gag/pol protein [Cucumis melo var. makuwa] | 4.1e-68 | 60.79 | Show/hide |
Query: MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGK-----------------------------------------------
M DVDKD+W+KAM+ EM+SMYFNSVWELVD P+GVKPIGCKWIYKRKR GK
Subjt: MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGK-----------------------------------------------
Query: ------NVDEPCVYKKIINCTVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKK
NVDEPCVYKKI VAFL+LYVDDILLIGNDVG LT++K WLA+QFQMKDLGEAQYVLG+QI++++KNK LA+S+A+YIDKML RY MQNSKK
Subjt: ------NVDEPCVYKKIINCTVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKK
Query: GLLPFRHGVHLFKDQCPKTPQEVEDMR
GLLPFRHGVHL K+QC KTPQEVED+R
Subjt: GLLPFRHGVHLFKDQCPKTPQEVEDMR
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| KAA0051787.1 gag/pol protein [Cucumis melo var. makuwa] | 4.1e-68 | 65.85 | Show/hide |
Query: MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKR--------------------------------GVDGKNVDEPCVYKKIINCT
M DVD ++WIK M+ E++SMY NSVW LVDQP+ VKPIGCKWIYKRKR G + KNVDEPCVYK+IIN T
Subjt: MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKR--------------------------------GVDGKNVDEPCVYKKIINCT
Query: VAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKKGLLPFRHGVHLFKDQCPKTPQ
VAFL+LYVDDILLIGNDVG L +IKEWLA+QFQMKDLG AQYVLG+QIV+N+KNK LAMS+ SYIDKMLSRYKMQNSKK LLP+R+G+HL K+QC KTPQ
Subjt: VAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKKGLLPFRHGVHLFKDQCPKTPQ
Query: EVEDM
E+EDM
Subjt: EVEDM
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| KAA0062926.1 gag/pol protein [Cucumis melo var. makuwa] | 3.4e-70 | 63.47 | Show/hide |
Query: MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGK---------------------------------------------NV
M DVDKD+W+KAM+ EM+S+YFNSVWELVD P+GVKPIGCKWIYKRKR GK NV
Subjt: MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGK---------------------------------------------NV
Query: DEPCVYKKIINCTVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKKGLLPFRHG
DEPCVYKKI VAFL+LYVDDILLI NDVG+LT++K WLA+QFQMKDLGEAQYVLG+QI++++KNKTLA+S+A+YIDKML RY MQNSKKGLLPFRHG
Subjt: DEPCVYKKIINCTVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKKGLLPFRHG
Query: VHLFKDQCPKTPQEVEDMR
VHL K+QCPKTPQEVEDMR
Subjt: VHLFKDQCPKTPQEVEDMR
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| TYK00851.1 gag/pol protein [Cucumis melo var. makuwa] | 5.4e-68 | 63.68 | Show/hide |
Query: DVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGK-----------------------------------------NVDEPCVY
+VD D+WIK ++ EM+SMY NSVW LVDQ + VKPIGCKWIYKRKR GK NVDEPCVY
Subjt: DVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGK-----------------------------------------NVDEPCVY
Query: KKIINCTVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKKGLLPFRHGVHLFKD
K+IIN TVAFL++YVDDILLIGNDVG LT+IK+WLA+QFQ+KDLG AQYVLG+QIV+N+KNKTLAMS+ SYIDKMLSRYKMQNSKKGLLP+R+G+HL K+
Subjt: KKIINCTVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKKGLLPFRHGVHLFKD
Query: QCPKTPQEVEDM
QCPKTPQEVEDM
Subjt: QCPKTPQEVEDM
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| TYK16417.1 gag/pol protein [Cucumis melo var. makuwa] | 3.4e-70 | 63.47 | Show/hide |
Query: MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGK---------------------------------------------NV
M DVDKD+W+KAM+ EM+S+YFNSVWELVD P+GVKPIGCKWIYKRKR GK NV
Subjt: MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGK---------------------------------------------NV
Query: DEPCVYKKIINCTVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKKGLLPFRHG
DEPCVYKKI VAFL+LYVDDILLI NDVG+LT++K WLA+QFQMKDLGEAQYVLG+QI++++KNKTLA+S+A+YIDKML RY MQNSKKGLLPFRHG
Subjt: DEPCVYKKIINCTVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKKGLLPFRHG
Query: VHLFKDQCPKTPQEVEDMR
VHL K+QCPKTPQEVEDMR
Subjt: VHLFKDQCPKTPQEVEDMR
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SGT6 Gag/pol protein | 2.0e-68 | 60.79 | Show/hide |
Query: MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGK-----------------------------------------------
M DVDKD+W+KAM+ EM+SMYFNSVWELVD P+GVKPIGCKWIYKRKR GK
Subjt: MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGK-----------------------------------------------
Query: ------NVDEPCVYKKIINCTVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKK
NVDEPCVYKKI VAFL+LYVDDILLIGNDVG LT++K WLA+QFQMKDLGEAQYVLG+QI++++KNK LA+S+A+YIDKML RY MQNSKK
Subjt: ------NVDEPCVYKKIINCTVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKK
Query: GLLPFRHGVHLFKDQCPKTPQEVEDMR
GLLPFRHGVHL K+QC KTPQEVED+R
Subjt: GLLPFRHGVHLFKDQCPKTPQEVEDMR
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| A0A5A7UBK6 Gag/pol protein | 2.0e-68 | 65.85 | Show/hide |
Query: MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKR--------------------------------GVDGKNVDEPCVYKKIINCT
M DVD ++WIK M+ E++SMY NSVW LVDQP+ VKPIGCKWIYKRKR G + KNVDEPCVYK+IIN T
Subjt: MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKR--------------------------------GVDGKNVDEPCVYKKIINCT
Query: VAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKKGLLPFRHGVHLFKDQCPKTPQ
VAFL+LYVDDILLIGNDVG L +IKEWLA+QFQMKDLG AQYVLG+QIV+N+KNK LAMS+ SYIDKMLSRYKMQNSKK LLP+R+G+HL K+QC KTPQ
Subjt: VAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKKGLLPFRHGVHLFKDQCPKTPQ
Query: EVEDM
E+EDM
Subjt: EVEDM
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| A0A5A7V901 Gag/pol protein | 1.6e-70 | 63.47 | Show/hide |
Query: MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGK---------------------------------------------NV
M DVDKD+W+KAM+ EM+S+YFNSVWELVD P+GVKPIGCKWIYKRKR GK NV
Subjt: MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGK---------------------------------------------NV
Query: DEPCVYKKIINCTVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKKGLLPFRHG
DEPCVYKKI VAFL+LYVDDILLI NDVG+LT++K WLA+QFQMKDLGEAQYVLG+QI++++KNKTLA+S+A+YIDKML RY MQNSKKGLLPFRHG
Subjt: DEPCVYKKIINCTVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKKGLLPFRHG
Query: VHLFKDQCPKTPQEVEDMR
VHL K+QCPKTPQEVEDMR
Subjt: VHLFKDQCPKTPQEVEDMR
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| A0A5D3BM03 Gag/pol protein | 2.6e-68 | 63.68 | Show/hide |
Query: DVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGK-----------------------------------------NVDEPCVY
+VD D+WIK ++ EM+SMY NSVW LVDQ + VKPIGCKWIYKRKR GK NVDEPCVY
Subjt: DVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGK-----------------------------------------NVDEPCVY
Query: KKIINCTVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKKGLLPFRHGVHLFKD
K+IIN TVAFL++YVDDILLIGNDVG LT+IK+WLA+QFQ+KDLG AQYVLG+QIV+N+KNKTLAMS+ SYIDKMLSRYKMQNSKKGLLP+R+G+HL K+
Subjt: KKIINCTVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKKGLLPFRHGVHLFKD
Query: QCPKTPQEVEDM
QCPKTPQEVEDM
Subjt: QCPKTPQEVEDM
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| A0A5D3CWZ1 Gag/pol protein | 1.6e-70 | 63.47 | Show/hide |
Query: MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGK---------------------------------------------NV
M DVDKD+W+KAM+ EM+S+YFNSVWELVD P+GVKPIGCKWIYKRKR GK NV
Subjt: MADVDKDEWIKAMNQEMQSMYFNSVWELVDQPDGVKPIGCKWIYKRKRGVDGK---------------------------------------------NV
Query: DEPCVYKKIINCTVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKKGLLPFRHG
DEPCVYKKI VAFL+LYVDDILLI NDVG+LT++K WLA+QFQMKDLGEAQYVLG+QI++++KNKTLA+S+A+YIDKML RY MQNSKKGLLPFRHG
Subjt: DEPCVYKKIINCTVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKKGLLPFRHG
Query: VHLFKDQCPKTPQEVEDMR
VHL K+QCPKTPQEVEDMR
Subjt: VHLFKDQCPKTPQEVEDMR
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 7.2e-07 | 33.71 | Show/hide |
Query: CVY---KKIINCTVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQN
C+Y K IN + +++LYVDD+++ D+ + N K +L +F+M DL E ++ +G++I + Q++K + +S+++Y+ K+LS++ M+N
Subjt: CVY---KKIINCTVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQN
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 4.8e-19 | 39.34 | Show/hide |
Query: KNVDEPCVY-KKIINCTVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKKGLLP
K +PCVY K+ L+LYVDD+L++G D G + +K L+ F MKDLG AQ +LGM+IV+ + ++ L +S+ YI+++L R+ M+N+K P
Subjt: KNVDEPCVY-KKIINCTVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKKGLLP
Query: FRHGVHLFKDQCPKTPQEVEDM
+ L K CP T +E +M
Subjt: FRHGVHLFKDQCPKTPQEVEDM
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| P92519 Uncharacterized mitochondrial protein AtMg00810 | 3.9e-05 | 39.47 | Show/hide |
Query: FLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSK
+L+LYVDDILL G+ L + L+S F MKDLG Y LG+QI + L +S+ Y +++L+ M + K
Subjt: FLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSK
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 2.0e-04 | 33.33 | Show/hide |
Query: TVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKKGLLP
++ ++++YVDDIL+ GND L N + L+ +F +KD E Y LG++ + L +S+ YI +L+R M +K P
Subjt: TVAFLILYVDDILLIGNDVGFLTNIKEWLASQFQMKDLGEAQYVLGMQIVQNQKNKTLAMSEASYIDKMLSRYKMQNSKKGLLP
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