CuGenDBv2

Gene ID	Tan0010346
Organism	Trichosanthes anguina (Snake gourd v1)
Description	50S ribosomal protein L23, chloroplastic
Genome location	LG01:45295868..45305219
RNA-Seq Expression	Tan0010346
Synteny	Tan0010346
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0009507 - chloroplast (cellular component) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR001014 - Ribosomal protein L23/L25, conserved site IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR012678 - Ribosomal protein L23/L15e core domain superfamily IPR013025 - Ribosomal protein L25/L23

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

NP_054541.1 ribosomal protein L23 [Nicotiana tabacum]

5.0e-41

92.47

Show/hide

Query:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT
        MDGIKY VFTDKSIRLLGKNQYTSNVESGSTRTEIKHW+ELFFG  VIAMNSH+LPGKSRRMGPI+GHTMHYRRMIITLQ GYSIPPLRKKRT
Subjt:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT

YP_008082775.1 ribosomal protein L23 [Prinsepia utilis]

5.0e-41

92.47

Show/hide

Query:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT
        MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHW+ELFFG  VIAMNSH+LPGK RRMGPI+GHTMHYRRMIITLQ GYSIPPLRKKRT
Subjt:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT

YP_009262332.1 ribosomal protein L23 [Spondias tuberosa]

5.0e-41

92.47

Show/hide

Query:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT
        MDGIKY VFTDKSIRLLGKNQYTSNVESGSTRTEIKHW+ELFFG  VIAMNSHQLPGK RRMGPI+GHTMHYRRMIITLQ GYSIPPLRKKRT
Subjt:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT

YP_009437511.1 ribosomal protein L23 [Primulina eburnea]

3.8e-41

91.4

Show/hide

Query:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT
        MDGIKY VFTDKSIRLLGKNQYTSNVESGSTRTE+KHW+ELFFG  VIAMNSH+LPGK RRMGPI+GHTMHYRRMIITLQRGYSIPPLRKKRT
Subjt:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT

YP_009756322.1 ribosomal protein L23 [Withania coagulans]

1.7e-41

93.55

Show/hide

Query:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT
        MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHW+ELFFG  VIAMNSH+LPGKSRRMGPI+GHTMHYRRMIITLQ GYSIPPLRKKRT
Subjt:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT

TrEMBL top hits

e value

%identity

Alignment

A0A291F776 50S ribosomal protein L23, chloroplastic

1.9e-41

91.4

Show/hide

Query:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT
        MDGIKY VFTDKSIRLLGKNQYTSNVESGSTRTE+KHW+ELFFG  VIAMNSH+LPGK RRMGPI+GHTMHYRRMIITLQRGYSIPPLRKKRT
Subjt:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT

A0A5P8SZ13 50S ribosomal protein L23, chloroplastic

8.3e-42

93.55

Show/hide

Query:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT
        MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHW+ELFFG  VIAMNSH+LPGKSRRMGPI+GHTMHYRRMIITLQ GYSIPPLRKKRT
Subjt:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT

A0A6H1YDD7 50S ribosomal protein L23, chloroplastic

8.3e-42

93.55

Show/hide

Query:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT
        MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHW+ELFFG  VIAMNSH+LPGKSRRMGPI+GHTMHYRRMIITLQ GYSIPPLRKKRT
Subjt:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT

A0A6V8F3R1 50S ribosomal protein L23, chloroplastic

8.3e-42

93.55

Show/hide

Query:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT
        MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHW+ELFFG  VIAMNSH+LPGKSRRMGPI+GHTMHYRRMIITLQ GYSIPPLRKKRT
Subjt:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT

A0A6V8F6D5 50S ribosomal protein L23, chloroplastic

8.3e-42

93.55

Show/hide

Query:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT
        MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHW+ELFFG  VIAMNSH+LPGKSRRMGPI+GHTMHYRRMIITLQ GYSIPPLRKKRT
Subjt:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT

SwissProt top hits

e value

%identity

Alignment

Q2MI58 50S ribosomal protein L23, chloroplastic

6.6e-44

92.47

Show/hide

Query:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT
        MDGIKY VFTDKSIRLLGKNQYTSNVESGSTRTEIKHW+ELFFG  VIAMNSH+LPGKSRRMGPI+GHTMHYRRMIITLQ GYSIPPLRKKRT
Subjt:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT

Q2MIE5 50S ribosomal protein L23, chloroplastic

6.6e-44

92.47

Show/hide

Query:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT
        MDGIKY VFTDKSIRLLGKNQYTSNVESGSTRTEIKHW+ELFFG  VIAMNSH+LPGKSRRMGPI+GHTMHYRRMIITLQ GYSIPPLRKKRT
Subjt:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT

Q33BY9 50S ribosomal protein L23, chloroplastic

6.6e-44

92.47

Show/hide

Query:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT
        MDGIKY VFTDKSIRLLGKNQYTSNVESGSTRTEIKHW+ELFFG  VIAMNSH+LPGKSRRMGPI+GHTMHYRRMIITLQ GYSIPPLRKKRT
Subjt:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT

Q3C1N5 50S ribosomal protein L23, chloroplastic

6.6e-44

92.47

Show/hide

Query:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT
        MDGIKY VFTDKSIRLLGKNQYTSNVESGSTRTEIKHW+ELFFG  VIAMNSH+LPGKSRRMGPI+GHTMHYRRMIITLQ GYSIPPLRKKRT
Subjt:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT

Q7FNR4 50S ribosomal protein L23, chloroplastic

6.6e-44

92.47

Show/hide

Query:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT
        MDGIKY VFTDKSIRLLGKNQYTSNVESGSTRTEIKHW+ELFFG  VIAMNSH+LPGKSRRMGPI+GHTMHYRRMIITLQ GYSIPPLRKKRT
Subjt:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT

Arabidopsis top hits

e value

%identity

Alignment

ATCG00840.1 ribosomal protein L23.1

2.0e-43

89.25

Show/hide

Query:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT
        MDGIKY VFTDKSIRLLGKNQYT NVESGSTRTEIKHW+ELFFG  VIAMNSH+LPGK +RMGPI+GHTMHYRRMIITLQ GYSIPPLRKKRT
Subjt:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT

ATCG01300.1 ribosomal protein L23

2.0e-43

89.25

Show/hide

Query:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT
        MDGIKY VFTDKSIRLLGKNQYT NVESGSTRTEIKHW+ELFFG  VIAMNSH+LPGK +RMGPI+GHTMHYRRMIITLQ GYSIPPLRKKRT
Subjt:  MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFG--VIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATGGAATCAAATATGTAGTATTTACAGACAAAAGTATTCGGTTATTGGGAAAAAATCAATATACTTCTAATGTCGAATCAGGTTCAACTAGGACAGAAATAAAGCA
TTGGATCGAACTCTTCTTTGGTGTAATAGCTATGAATAGTCATCAACTCCCGGGAAAGAGTAGAAGAATGGGACCTATTATAGGACATACAATGCATTACAGACGTATGA
TCATTACGCTTCAACGGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDGIKYVVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWIELFFGVIAMNSHQLPGKSRRMGPIIGHTMHYRRMIITLQRGYSIPPLRKKRT

Tan0010346 (gene) of Snake gourd v1 genome