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Tan0010357 (gene) of Snake gourd v1 genome

Gene IDTan0010357
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationLG04:84945729..84947198
RNA-Seq ExpressionTan0010357
SyntenyTan0010357
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.6e-2225.25Show/hide
Query:  PADSLEEALNFFMSNVRWQIQSGDTVLFWHQNWTNYGTLKHSFPRFYALSSNKFLTVSDAWNVDSRTWDFLPRRPFFDREKAVWISVQSDWEPPHSSEDK
        P  S+ + L +F  +V W+I++G +  FWH +W     L   +PR YALS+NK  ++ D WN     WD  PRR   + E  +W  +++           
Subjt:  PADSLEEALNFFMSNVRWQIQSGDTVLFWHQNWTNYGTLKHSFPRFYALSSNKFLTVSDAWNVDSRTWDFLPRRPFFDREKAVWISVQSDWEPPHSSEDK

Query:  DALRWMGSIDGSFTVGS-----------------------------------------------------------------------------------
        D+  W  + +G +TV S                                                                                   
Subjt:  DALRWMGSIDGSFTVGS-----------------------------------------------------------------------------------

Query:  -AKSILR--TSHISTNIN---------------HKVDSQILFSNLIGAILWCVWLQRNDRLFNDKVIVASALFEDVLTLAAAWSSRSSIFGGYDISTIAL
         AKSI R  +SH+S+N+N                K    ++  N   + LW +WL+RN R+FN K    + ++ED+  LA  W+SRSS+F  Y  S+IAL
Subjt:  -AKSILR--TSHISTNIN---------------HKVDSQILFSNLIGAILWCVWLQRNDRLFNDKVIVASALFEDVLTLAAAWSSRSSIFGGYDISTIAL

Query:  NWRAF
        N  AF
Subjt:  NWRAF

KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.3e-2124.92Show/hide
Query:  PADSLEEALNFFMSNVRWQIQSGDTVLFWHQNWTNYGTLKHSFPRFYALSSNKFLTVSDAWNVDSRTWDFLPRRPFFDREKAVWISVQSDWEPPHSSEDK
        P  S+ + L +F  +V W+I++G +  FWH +W     L   +PR +ALS+NK  ++ D WN     WD  PRR   + E  +W  +++          K
Subjt:  PADSLEEALNFFMSNVRWQIQSGDTVLFWHQNWTNYGTLKHSFPRFYALSSNKFLTVSDAWNVDSRTWDFLPRRPFFDREKAVWISVQSDWEPPHSSEDK

Query:  DALRWMGSIDGSFTVGS-----------------------------------------------------------------------------------
        D+  W  + +G +TV S                                                                                   
Subjt:  DALRWMGSIDGSFTVGS-----------------------------------------------------------------------------------

Query:  -AKSILR--TSHISTNIN---------------HKVDSQILFSNLIGAILWCVWLQRNDRLFNDKVIVASALFEDVLTLAAAWSSRSSIFGGYDISTIAL
         AKSI R  +SH+++N+N                K    ++  N   + LW +WL+RN R+FN K    + ++ED+  LA  W+SRSS+F  Y  S+IAL
Subjt:  -AKSILR--TSHISTNIN---------------HKVDSQILFSNLIGAILWCVWLQRNDRLFNDKVIVASALFEDVLTLAAAWSSRSSIFGGYDISTIAL

Query:  NWRAF
        N  AF
Subjt:  NWRAF

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.3e-2225.57Show/hide
Query:  PADSLEEALNFFMSNVRWQIQSGDTVLFWHQNWTNYGTLKHSFPRFYALSSNKFLTVSDAWNVDSRTWDFLPRRPFFDREKAVWISVQSDWEPPHSSEDK
        P  S+ + L +F  +V W+I++G +  FWH +W     L   +PR YALS+NK  ++ D WN     WD  PRR   + E  +W  +++          K
Subjt:  PADSLEEALNFFMSNVRWQIQSGDTVLFWHQNWTNYGTLKHSFPRFYALSSNKFLTVSDAWNVDSRTWDFLPRRPFFDREKAVWISVQSDWEPPHSSEDK

Query:  DALRWMGSIDGSFTVGS-----------------------------------------------------------------------------------
        D+  W  + +G +TV S                                                                                   
Subjt:  DALRWMGSIDGSFTVGS-----------------------------------------------------------------------------------

Query:  -AKSILRT--SHISTNIN---------------HKVDSQILFSNLIGAILWCVWLQRNDRLFNDKVIVASALFEDVLTLAAAWSSRSSIFGGYDISTIAL
         AKSI RT  SH+++N+N                K    ++  N   + LW +WL+RN R+FN K    + ++ED+  LA  W+SRSS+F  Y  S+IAL
Subjt:  -AKSILRT--SHISTNIN---------------HKVDSQILFSNLIGAILWCVWLQRNDRLFNDKVIVASALFEDVLTLAAAWSSRSSIFGGYDISTIAL

Query:  NWRAF
        N  AF
Subjt:  NWRAF

TYK10356.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.6e-1924.53Show/hide
Query:  PVPPADSLEEA-LNFFMSN---------VRWQIQSGDTVLFWHQNWTNYGTLKHSFPRFYALSSNKFLTVSDAWNVDSRTWDFLPRRPFFDREKAVWISV
        PV    S+E++  NFF  N         V W+I++G    FWH +W     L   +PR +ALS+N+  ++ D WN     WD  PRR   D E  +W  +
Subjt:  PVPPADSLEEA-LNFFMSN---------VRWQIQSGDTVLFWHQNWTNYGTLKHSFPRFYALSSNKFLTVSDAWNVDSRTWDFLPRRPFFDREKAVWISV

Query:  QSDWEPPHSSEDKDALRWMGSIDGSFTVGS----------------------------------------------------------------------
        ++          +D+  W+ + DG ++V S                                                                      
Subjt:  QSDWEPPHSSEDKDALRWMGSIDGSFTVGS----------------------------------------------------------------------

Query:  --------------AKSI--LRTSHISTNIN---------------HKVDSQILFSNLIGAILWCVWLQRNDRLFNDKVIVASALFEDVLTLAAAWSSRS
                      AKSI  L +SH+ +N+N                K    I+  N   + LW +WL+RN R+FN K    + L+ED+  LA  W+SR 
Subjt:  --------------AKSI--LRTSHISTNIN---------------HKVDSQILFSNLIGAILWCVWLQRNDRLFNDKVIVASALFEDVLTLAAAWSSRS

Query:  SIFGGYDISTIALNWRAF
         +F  Y  ++IALN  AF
Subjt:  SIFGGYDISTIALNWRAF

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]5.6e-2225.25Show/hide
Query:  PADSLEEALNFFMSNVRWQIQSGDTVLFWHQNWTNYGTLKHSFPRFYALSSNKFLTVSDAWNVDSRTWDFLPRRPFFDREKAVWISVQSDWEPPHSSEDK
        P  S+ + L +F  +V W+I++G +  FWH +W     L   +PR YALS+NK  ++ D WN     WD  PRR   + E  +W  +++           
Subjt:  PADSLEEALNFFMSNVRWQIQSGDTVLFWHQNWTNYGTLKHSFPRFYALSSNKFLTVSDAWNVDSRTWDFLPRRPFFDREKAVWISVQSDWEPPHSSEDK

Query:  DALRWMGSIDGSFTVGS-----------------------------------------------------------------------------------
        D+  W  + +G +TV S                                                                                   
Subjt:  DALRWMGSIDGSFTVGS-----------------------------------------------------------------------------------

Query:  -AKSILR--TSHISTNIN---------------HKVDSQILFSNLIGAILWCVWLQRNDRLFNDKVIVASALFEDVLTLAAAWSSRSSIFGGYDISTIAL
         AKSI R  +SH+S+N+N                K    ++  N   + LW +WL+RN R+FN K    + ++ED+  LA  W+SRSS+F  Y  S+IAL
Subjt:  -AKSILR--TSHISTNIN---------------HKVDSQILFSNLIGAILWCVWLQRNDRLFNDKVIVASALFEDVLTLAAAWSSRSSIFGGYDISTIAL

Query:  NWRAF
        N  AF
Subjt:  NWRAF

TrEMBL top hitse value%identityAlignment
A0A1S4E2K5 LINE-1 retrotransposable element ORF2 protein2.7e-2225.25Show/hide
Query:  PADSLEEALNFFMSNVRWQIQSGDTVLFWHQNWTNYGTLKHSFPRFYALSSNKFLTVSDAWNVDSRTWDFLPRRPFFDREKAVWISVQSDWEPPHSSEDK
        P  S+ + L +F  +V W+I++G +  FWH +W     L   +PR YALS+NK  ++ D WN     WD  PRR   + E  +W  +++           
Subjt:  PADSLEEALNFFMSNVRWQIQSGDTVLFWHQNWTNYGTLKHSFPRFYALSSNKFLTVSDAWNVDSRTWDFLPRRPFFDREKAVWISVQSDWEPPHSSEDK

Query:  DALRWMGSIDGSFTVGS-----------------------------------------------------------------------------------
        D+  W  + +G +TV S                                                                                   
Subjt:  DALRWMGSIDGSFTVGS-----------------------------------------------------------------------------------

Query:  -AKSILR--TSHISTNIN---------------HKVDSQILFSNLIGAILWCVWLQRNDRLFNDKVIVASALFEDVLTLAAAWSSRSSIFGGYDISTIAL
         AKSI R  +SH+S+N+N                K    ++  N   + LW +WL+RN R+FN K    + ++ED+  LA  W+SRSS+F  Y  S+IAL
Subjt:  -AKSILR--TSHISTNIN---------------HKVDSQILFSNLIGAILWCVWLQRNDRLFNDKVIVASALFEDVLTLAAAWSSRSSIFGGYDISTIAL

Query:  NWRAF
        N  AF
Subjt:  NWRAF

A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein6.1e-2224.92Show/hide
Query:  PADSLEEALNFFMSNVRWQIQSGDTVLFWHQNWTNYGTLKHSFPRFYALSSNKFLTVSDAWNVDSRTWDFLPRRPFFDREKAVWISVQSDWEPPHSSEDK
        P  S+ + L +F  +V W+I++G +  FWH +W     L   +PR +ALS+NK  ++ D WN     WD  PRR   + E  +W  +++          K
Subjt:  PADSLEEALNFFMSNVRWQIQSGDTVLFWHQNWTNYGTLKHSFPRFYALSSNKFLTVSDAWNVDSRTWDFLPRRPFFDREKAVWISVQSDWEPPHSSEDK

Query:  DALRWMGSIDGSFTVGS-----------------------------------------------------------------------------------
        D+  W  + +G +TV S                                                                                   
Subjt:  DALRWMGSIDGSFTVGS-----------------------------------------------------------------------------------

Query:  -AKSILR--TSHISTNIN---------------HKVDSQILFSNLIGAILWCVWLQRNDRLFNDKVIVASALFEDVLTLAAAWSSRSSIFGGYDISTIAL
         AKSI R  +SH+++N+N                K    ++  N   + LW +WL+RN R+FN K    + ++ED+  LA  W+SRSS+F  Y  S+IAL
Subjt:  -AKSILR--TSHISTNIN---------------HKVDSQILFSNLIGAILWCVWLQRNDRLFNDKVIVASALFEDVLTLAAAWSSRSSIFGGYDISTIAL

Query:  NWRAF
        N  AF
Subjt:  NWRAF

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein1.6e-2225.57Show/hide
Query:  PADSLEEALNFFMSNVRWQIQSGDTVLFWHQNWTNYGTLKHSFPRFYALSSNKFLTVSDAWNVDSRTWDFLPRRPFFDREKAVWISVQSDWEPPHSSEDK
        P  S+ + L +F  +V W+I++G +  FWH +W     L   +PR YALS+NK  ++ D WN     WD  PRR   + E  +W  +++          K
Subjt:  PADSLEEALNFFMSNVRWQIQSGDTVLFWHQNWTNYGTLKHSFPRFYALSSNKFLTVSDAWNVDSRTWDFLPRRPFFDREKAVWISVQSDWEPPHSSEDK

Query:  DALRWMGSIDGSFTVGS-----------------------------------------------------------------------------------
        D+  W  + +G +TV S                                                                                   
Subjt:  DALRWMGSIDGSFTVGS-----------------------------------------------------------------------------------

Query:  -AKSILRT--SHISTNIN---------------HKVDSQILFSNLIGAILWCVWLQRNDRLFNDKVIVASALFEDVLTLAAAWSSRSSIFGGYDISTIAL
         AKSI RT  SH+++N+N                K    ++  N   + LW +WL+RN R+FN K    + ++ED+  LA  W+SRSS+F  Y  S+IAL
Subjt:  -AKSILRT--SHISTNIN---------------HKVDSQILFSNLIGAILWCVWLQRNDRLFNDKVIVASALFEDVLTLAAAWSSRSSIFGGYDISTIAL

Query:  NWRAF
        N  AF
Subjt:  NWRAF

A0A5D3CJ08 LINE-1 retrotransposable element ORF2 protein3.7e-1924.53Show/hide
Query:  PVPPADSLEEA-LNFFMSN---------VRWQIQSGDTVLFWHQNWTNYGTLKHSFPRFYALSSNKFLTVSDAWNVDSRTWDFLPRRPFFDREKAVWISV
        PV    S+E++  NFF  N         V W+I++G    FWH +W     L   +PR +ALS+N+  ++ D WN     WD  PRR   D E  +W  +
Subjt:  PVPPADSLEEA-LNFFMSN---------VRWQIQSGDTVLFWHQNWTNYGTLKHSFPRFYALSSNKFLTVSDAWNVDSRTWDFLPRRPFFDREKAVWISV

Query:  QSDWEPPHSSEDKDALRWMGSIDGSFTVGS----------------------------------------------------------------------
        ++          +D+  W+ + DG ++V S                                                                      
Subjt:  QSDWEPPHSSEDKDALRWMGSIDGSFTVGS----------------------------------------------------------------------

Query:  --------------AKSI--LRTSHISTNIN---------------HKVDSQILFSNLIGAILWCVWLQRNDRLFNDKVIVASALFEDVLTLAAAWSSRS
                      AKSI  L +SH+ +N+N                K    I+  N   + LW +WL+RN R+FN K    + L+ED+  LA  W+SR 
Subjt:  --------------AKSI--LRTSHISTNIN---------------HKVDSQILFSNLIGAILWCVWLQRNDRLFNDKVIVASALFEDVLTLAAAWSSRS

Query:  SIFGGYDISTIALNWRAF
         +F  Y  ++IALN  AF
Subjt:  SIFGGYDISTIALNWRAF

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein2.7e-2225.25Show/hide
Query:  PADSLEEALNFFMSNVRWQIQSGDTVLFWHQNWTNYGTLKHSFPRFYALSSNKFLTVSDAWNVDSRTWDFLPRRPFFDREKAVWISVQSDWEPPHSSEDK
        P  S+ + L +F  +V W+I++G +  FWH +W     L   +PR YALS+NK  ++ D WN     WD  PRR   + E  +W  +++           
Subjt:  PADSLEEALNFFMSNVRWQIQSGDTVLFWHQNWTNYGTLKHSFPRFYALSSNKFLTVSDAWNVDSRTWDFLPRRPFFDREKAVWISVQSDWEPPHSSEDK

Query:  DALRWMGSIDGSFTVGS-----------------------------------------------------------------------------------
        D+  W  + +G +TV S                                                                                   
Subjt:  DALRWMGSIDGSFTVGS-----------------------------------------------------------------------------------

Query:  -AKSILR--TSHISTNIN---------------HKVDSQILFSNLIGAILWCVWLQRNDRLFNDKVIVASALFEDVLTLAAAWSSRSSIFGGYDISTIAL
         AKSI R  +SH+S+N+N                K    ++  N   + LW +WL+RN R+FN K    + ++ED+  LA  W+SRSS+F  Y  S+IAL
Subjt:  -AKSILR--TSHISTNIN---------------HKVDSQILFSNLIGAILWCVWLQRNDRLFNDKVIVASALFEDVLTLAAAWSSRSSIFGGYDISTIAL

Query:  NWRAF
        N  AF
Subjt:  NWRAF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCTTGTAGGGGTTATTGAGCTAGACGCACCTCCCGTTCCTCCTGCGGATTCACTCGAGGAGGCGTTAAACTTTTTCATGAGTAATGTTCGGTGGCAAATTCAAAG
CGGAGACACAGTCTTATTCTGGCACCAGAATTGGACCAATTATGGGACGCTGAAACACAGTTTTCCTCGGTTTTATGCTTTGTCTTCTAATAAGTTTCTTACTGTTTCAG
ATGCATGGAATGTTGATTCGAGAACTTGGGATTTCCTTCCTAGAAGACCCTTTTTCGATCGAGAAAAGGCGGTGTGGATCAGTGTTCAATCTGATTGGGAACCGCCCCAC
AGTAGTGAAGACAAGGATGCGTTAAGATGGATGGGAAGCATTGATGGCTCGTTTACCGTTGGGTCTGCTAAATCCATTCTTCGAACTTCACATATTTCCACAAATATTAA
TCACAAAGTGGATAGTCAAATTCTTTTCTCAAATCTTATTGGGGCTATTTTATGGTGCGTCTGGTTGCAAAGGAACGATCGGTTGTTTAACGATAAAGTTATTGTTGCTT
CTGCTCTCTTTGAAGACGTCCTGACTCTTGCGGCTGCATGGAGTTCCAGATCCTCGATTTTTGGTGGATACGATATTTCCACTATTGCTCTTAACTGGCGAGCTTTCTTT
TGA
mRNA sequenceShow/hide mRNA sequence
ATGGACCTTGTAGGGGTTATTGAGCTAGACGCACCTCCCGTTCCTCCTGCGGATTCACTCGAGGAGGCGTTAAACTTTTTCATGAGTAATGTTCGGTGGCAAATTCAAAG
CGGAGACACAGTCTTATTCTGGCACCAGAATTGGACCAATTATGGGACGCTGAAACACAGTTTTCCTCGGTTTTATGCTTTGTCTTCTAATAAGTTTCTTACTGTTTCAG
ATGCATGGAATGTTGATTCGAGAACTTGGGATTTCCTTCCTAGAAGACCCTTTTTCGATCGAGAAAAGGCGGTGTGGATCAGTGTTCAATCTGATTGGGAACCGCCCCAC
AGTAGTGAAGACAAGGATGCGTTAAGATGGATGGGAAGCATTGATGGCTCGTTTACCGTTGGGTCTGCTAAATCCATTCTTCGAACTTCACATATTTCCACAAATATTAA
TCACAAAGTGGATAGTCAAATTCTTTTCTCAAATCTTATTGGGGCTATTTTATGGTGCGTCTGGTTGCAAAGGAACGATCGGTTGTTTAACGATAAAGTTATTGTTGCTT
CTGCTCTCTTTGAAGACGTCCTGACTCTTGCGGCTGCATGGAGTTCCAGATCCTCGATTTTTGGTGGATACGATATTTCCACTATTGCTCTTAACTGGCGAGCTTTCTTT
TGA
Protein sequenceShow/hide protein sequence
MDLVGVIELDAPPVPPADSLEEALNFFMSNVRWQIQSGDTVLFWHQNWTNYGTLKHSFPRFYALSSNKFLTVSDAWNVDSRTWDFLPRRPFFDREKAVWISVQSDWEPPH
SSEDKDALRWMGSIDGSFTVGSAKSILRTSHISTNINHKVDSQILFSNLIGAILWCVWLQRNDRLFNDKVIVASALFEDVLTLAAAWSSRSSIFGGYDISTIALNWRAFF