CuGenDBv2

Gene ID	Tan0010381
Organism	Trichosanthes anguina (Snake gourd v1)
Description	transcription elongation factor B polypeptide 3 isoform X2
Genome location	LG01:106289095..106289511
RNA-Seq Expression	Tan0010381
Synteny	Tan0010381
Gene Ontology terms	GO:0006368 - transcription elongation from RNA polymerase II promoter (biological process) GO:0070449 - elongin complex (cellular component)
InterPro domains	IPR010684 - RNA polymerase II transcription factor SIII, subunit A

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7034869.1 hypothetical protein SDJN02_01662 [Cucurbita argyrosperma subsp. argyrosperma]

4.3e-20

47.74

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Query:  MSEVSKVSSLNDDVLVNKLTDSLKCLEN-----------------IDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGKIYTNYVSE----TKGPFTWEQ
        M  V KV SL  D+ V K  D+L+ L +                 +DQ M VEKS EGRDLTP+ ++LWK+ YERQFG+  TN VSE     K  F W Q
Subjt:  MSEVSKVSSLNDDVLVNKLTDSLKCLEN-----------------IDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGKIYTNYVSE----TKGPFTWEQ

Query:  LYEAKMKDVENKRRESENRFIQNYQKEKARKESRQIKFCEVVTSPSNKKQRFEGK
        LYEAKMKD+E    E+ +R  Q+Y KE ARK+SRQI+ C  V   SNK+  F GK
Subjt:  LYEAKMKDVENKRRESENRFIQNYQKEKARKESRQIKFCEVVTSPSNKKQRFEGK

XP_022948140.1 transcription elongation factor B polypeptide 3 isoform X1 [Cucurbita moschata]

9.6e-20

47.65

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Query:  MSEVSKVSSLNDDVLVNKLTDSLKCLEN-----------------IDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGKIYTNYVSE----TKGPFTWEQ
        M  V KV SL  D+ V K  D+L+ L +                 +DQ M VEKS EGRDLTP+ ++LWK+ YERQFG+  TN VSE     K  F W Q
Subjt:  MSEVSKVSSLNDDVLVNKLTDSLKCLEN-----------------IDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGKIYTNYVSE----TKGPFTWEQ

Query:  LYEAKMKDVENKRRESENRFIQNYQKEKARKESRQIKFCEVVTSPSNKK
        LYEAKMKD+E    E+ +R  Q+Y KE ARK+SRQI+ C  V   SNK+
Subjt:  LYEAKMKDVENKRRESENRFIQNYQKEKARKESRQIKFCEVVTSPSNKK

XP_022970778.1 transcription elongation factor B polypeptide 3 isoform X2 [Cucurbita maxima]

9.6e-20

47.65

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Query:  MSEVSKVSSLNDDVLVNKLTDSLKCLEN-----------------IDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGKIYTNYVSE----TKGPFTWEQ
        M  V KV SL  D+ V K  D+L+ L +                 +DQ M VEKS EGRDLTP+ ++LWK+ YERQFG+  TN VSE     K  F W Q
Subjt:  MSEVSKVSSLNDDVLVNKLTDSLKCLEN-----------------IDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGKIYTNYVSE----TKGPFTWEQ

Query:  LYEAKMKDVENKRRESENRFIQNYQKEKARKESRQIKFCEVVTSPSNKK
        LYEAKMKD+E    E+ +R  Q+Y KE ARK+SRQI+ C  V   SNK+
Subjt:  LYEAKMKDVENKRRESENRFIQNYQKEKARKESRQIKFCEVVTSPSNKK

XP_023534755.1 transcription elongation factor B polypeptide 3 isoform X1 [Cucurbita pepo subsp. pepo]

9.6e-20

47.65

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Query:  MSEVSKVSSLNDDVLVNKLTDSLKCLEN-----------------IDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGKIYTNYVSE----TKGPFTWEQ
        M  V KV SL  D+ V K  D+L+ L +                 +DQ M VEKS EGRDLTP+ ++LWK+ YERQFG+  TN VSE     K  F W Q
Subjt:  MSEVSKVSSLNDDVLVNKLTDSLKCLEN-----------------IDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGKIYTNYVSE----TKGPFTWEQ

Query:  LYEAKMKDVENKRRESENRFIQNYQKEKARKESRQIKFCEVVTSPSNKK
        LYEAKMKD+E    E+ +R  Q+Y KE ARK+SRQI+ C  V   SNK+
Subjt:  LYEAKMKDVENKRRESENRFIQNYQKEKARKESRQIKFCEVVTSPSNKK

XP_023534757.1 transcription elongation factor B polypeptide 3 isoform X2 [Cucurbita pepo subsp. pepo]

9.6e-20

47.65

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Query:  MSEVSKVSSLNDDVLVNKLTDSLKCLEN-----------------IDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGKIYTNYVSE----TKGPFTWEQ
        M  V KV SL  D+ V K  D+L+ L +                 +DQ M VEKS EGRDLTP+ ++LWK+ YERQFG+  TN VSE     K  F W Q
Subjt:  MSEVSKVSSLNDDVLVNKLTDSLKCLEN-----------------IDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGKIYTNYVSE----TKGPFTWEQ

Query:  LYEAKMKDVENKRRESENRFIQNYQKEKARKESRQIKFCEVVTSPSNKK
        LYEAKMKD+E    E+ +R  Q+Y KE ARK+SRQI+ C  V   SNK+
Subjt:  LYEAKMKDVENKRRESENRFIQNYQKEKARKESRQIKFCEVVTSPSNKK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1G8K1 transcription elongation factor B polypeptide 3 isoform X2

4.7e-20

47.65

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Query:  MSEVSKVSSLNDDVLVNKLTDSLKCLEN-----------------IDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGKIYTNYVSE----TKGPFTWEQ
        M  V KV SL  D+ V K  D+L+ L +                 +DQ M VEKS EGRDLTP+ ++LWK+ YERQFG+  TN VSE     K  F W Q
Subjt:  MSEVSKVSSLNDDVLVNKLTDSLKCLEN-----------------IDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGKIYTNYVSE----TKGPFTWEQ

Query:  LYEAKMKDVENKRRESENRFIQNYQKEKARKESRQIKFCEVVTSPSNKK
        LYEAKMKD+E    E+ +R  Q+Y KE ARK+SRQI+ C  V   SNK+
Subjt:  LYEAKMKDVENKRRESENRFIQNYQKEKARKESRQIKFCEVVTSPSNKK

A0A6J1G8W9 transcription elongation factor B polypeptide 3 isoform X1

4.7e-20

47.65

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Query:  MSEVSKVSSLNDDVLVNKLTDSLKCLEN-----------------IDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGKIYTNYVSE----TKGPFTWEQ
        M  V KV SL  D+ V K  D+L+ L +                 +DQ M VEKS EGRDLTP+ ++LWK+ YERQFG+  TN VSE     K  F W Q
Subjt:  MSEVSKVSSLNDDVLVNKLTDSLKCLEN-----------------IDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGKIYTNYVSE----TKGPFTWEQ

Query:  LYEAKMKDVENKRRESENRFIQNYQKEKARKESRQIKFCEVVTSPSNKK
        LYEAKMKD+E    E+ +R  Q+Y KE ARK+SRQI+ C  V   SNK+
Subjt:  LYEAKMKDVENKRRESENRFIQNYQKEKARKESRQIKFCEVVTSPSNKK

A0A6J1I1I3 transcription elongation factor B polypeptide 3 isoform X1

4.7e-20

47.65

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Query:  MSEVSKVSSLNDDVLVNKLTDSLKCLEN-----------------IDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGKIYTNYVSE----TKGPFTWEQ
        M  V KV SL  D+ V K  D+L+ L +                 +DQ M VEKS EGRDLTP+ ++LWK+ YERQFG+  TN VSE     K  F W Q
Subjt:  MSEVSKVSSLNDDVLVNKLTDSLKCLEN-----------------IDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGKIYTNYVSE----TKGPFTWEQ

Query:  LYEAKMKDVENKRRESENRFIQNYQKEKARKESRQIKFCEVVTSPSNKK
        LYEAKMKD+E    E+ +R  Q+Y KE ARK+SRQI+ C  V   SNK+
Subjt:  LYEAKMKDVENKRRESENRFIQNYQKEKARKESRQIKFCEVVTSPSNKK

A0A6J1I4W9 transcription elongation factor B polypeptide 3 isoform X2

4.7e-20

47.65

Show/hide

Query:  MSEVSKVSSLNDDVLVNKLTDSLKCLEN-----------------IDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGKIYTNYVSE----TKGPFTWEQ
        M  V KV SL  D+ V K  D+L+ L +                 +DQ M VEKS EGRDLTP+ ++LWK+ YERQFG+  TN VSE     K  F W Q
Subjt:  MSEVSKVSSLNDDVLVNKLTDSLKCLEN-----------------IDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGKIYTNYVSE----TKGPFTWEQ

Query:  LYEAKMKDVENKRRESENRFIQNYQKEKARKESRQIKFCEVVTSPSNKK
        LYEAKMKD+E    E+ +R  Q+Y KE ARK+SRQI+ C  V   SNK+
Subjt:  LYEAKMKDVENKRRESENRFIQNYQKEKARKESRQIKFCEVVTSPSNKK

A0A6P6G5D8 elongin-A

1.5e-18

52.29

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Query:  IDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGKIYTNYV---SETKGP-FTWEQLYEAKMKDVENKRRESENRFIQNYQKEKARKESRQIKFCEVVTSP
        +DQ M VEK  EGRDL+PI ++LWK+ YE+ FG   TN V     TKG  F W+QLYEAK+KDV N  +++ +R +Q Y+KE ARK+SRQ++FC  V   
Subjt:  IDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGKIYTNYV---SETKGP-FTWEQLYEAKMKDVENKRRESENRFIQNYQKEKARKESRQIKFCEVVTSP

Query:  SNKKQRFEG
        SNK+  F G
Subjt:  SNKKQRFEG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G42780.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).

5.8e-07

29.52

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Query:  IDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGK-----IYTNYVSETKGPFTWEQLYEAKMKDVENKRRESENRFIQNYQKEKARKESRQIKFCEVVTS
        ++Q   +E + +  DL+PI ++ WK  Y++ +G+     +  +        F W  LYE K+  V+ K +E   R  + Y+ E  RK+SRQ K C    +
Subjt:  IDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGK-----IYTNYVSETKGPFTWEQLYEAKMKDVENKRRESENRFIQNYQKEKARKESRQIKFCEVVTS

Query:  PSNKK
        P +K+
Subjt:  PSNKK

AT2G42780.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684).

5.8e-07

29.52

Show/hide

Query:  IDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGK-----IYTNYVSETKGPFTWEQLYEAKMKDVENKRRESENRFIQNYQKEKARKESRQIKFCEVVTS
        ++Q   +E + +  DL+PI ++ WK  Y++ +G+     +  +        F W  LYE K+  V+ K +E   R  + Y+ E  RK+SRQ K C    +
Subjt:  IDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGK-----IYTNYVSETKGPFTWEQLYEAKMKDVENKRRESENRFIQNYQKEKARKESRQIKFCEVVTS

Query:  PSNKK
        P +K+
Subjt:  PSNKK

Sequences

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CDS sequence

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ATGTCTGAAGTAAGTAAAGTAAGTTCGTTGAATGATGATGTTTTGGTTAACAAACTTACAGATAGTTTGAAGTGTCTTGAAAACATTGACCAATCGATGCCTGTGGAGAA
AAGTTATGAAGGAAGAGATCTCACCCCCATAATTGAAAGATTGTGGAAAGAACAATACGAAAGACAGTTTGGTAAAATTTATACTAATTATGTAAGTGAGACAAAAGGGC
CATTTACATGGGAGCAGTTATATGAGGCCAAAATGAAGGATGTAGAAAACAAGAGAAGGGAAAGTGAGAATCGATTTATTCAAAACTACCAAAAGGAAAAAGCTCGAAAA
GAAAGTCGTCAAATAAAGTTTTGTGAGGTAGTTACATCTCCAAGCAATAAGAAGCAAAGATTTGAAGGAAAAGCAGGATGCAAATAA

mRNA sequence

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Protein sequence

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MSEVSKVSSLNDDVLVNKLTDSLKCLENIDQSMPVEKSYEGRDLTPIIERLWKEQYERQFGKIYTNYVSETKGPFTWEQLYEAKMKDVENKRRESENRFIQNYQKEKARK
ESRQIKFCEVVTSPSNKKQRFEGKAGCK

Tan0010381 (gene) of Snake gourd v1 genome