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Tan0010390 (gene) of Snake gourd v1 genome

Gene IDTan0010390
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG07:44094057..44101996
RNA-Seq ExpressionTan0010390
SyntenyTan0010390
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035809.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.4e-0851.52Show/hide
Query:  VSDRDPRFTSMFWPSLQKTMGTKLSFSTTFHSQTDRQPRGNRLSVRAKVLVLTVEIELPVPDNLPL
        VSDRDPRFTS FWPSLQK MGT L FST+FH QTD Q +    ++   +    V+++     +LPL
Subjt:  VSDRDPRFTSMFWPSLQKTMGTKLSFSTTFHSQTDRQPRGNRLSVRAKVLVLTVEIELPVPDNLPL

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]5.9e-1047.06Show/hide
Query:  PRGNRLSVRAKVLVLTVEIELPVPDNLPLSVRSSTRLIFRTWVEFYRKS------------------ICKTGSTCIVREVNDVCWLHAVCRAKLAGSSGG
        PRGNR ++    L  TVEIELPVPD LP S  SS +    TW+E Y +S                  +C  GS  IVR  +D+CWLHAV  AK AGS GG
Subjt:  PRGNRLSVRAKVLVLTVEIELPVPDNLPLSVRSSTRLIFRTWVEFYRKS------------------ICKTGSTCIVREVNDVCWLHAVCRAKLAGSSGG

Query:  GV
        GV
Subjt:  GV

RVW26904.1 Transposon Tf2-12 polyprotein [Vitis vinifera]2.5e-0878.05Show/hide
Query:  VSDRDPRFTSMFWPSLQKTMGTKLSFSTTFHSQTDRQPRGN
        VSDRDPRFTS FW SLQK +GTKLSFSTTFH QTD Q +G+
Subjt:  VSDRDPRFTSMFWPSLQKTMGTKLSFSTTFHSQTDRQPRGN

RVW27091.1 hypothetical protein CK203_098967 [Vitis vinifera]5.5e-0868.63Show/hide
Query:  VSDRDPRFTSMFWPSLQKTMGTKLSFSTTFHSQTDRQPRGNRLSVRAKVLV
        VSDRDPRFTS FW SLQK +GTKLSFST FHSQTD Q    RL+V    L+
Subjt:  VSDRDPRFTSMFWPSLQKTMGTKLSFSTTFHSQTDRQPRGNRLSVRAKVLV

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]1.9e-0851.72Show/hide
Query:  TVEIELPVPDNLPLSVRSSTRLIFRTWVE-----FYRKSICKTGSTC--------IVREVNDVCWLHAVCRAKLAGSSGGGVTRTTY
        ++EIEL VPD LP S  SS      TW+E     FY+ S  +T S          IVRE NDVCWLHAV RAK+AG SGGGVT  +Y
Subjt:  TVEIELPVPDNLPLSVRSSTRLIFRTWVE-----FYRKSICKTGSTC--------IVREVNDVCWLHAVCRAKLAGSSGGGVTRTTY

TrEMBL top hitse value%identityAlignment
A0A438CUM5 Transposon Tf2-12 polyprotein1.2e-0878.05Show/hide
Query:  VSDRDPRFTSMFWPSLQKTMGTKLSFSTTFHSQTDRQPRGN
        VSDRDPRFTS FW SLQK +GTKLSFSTTFH QTD Q +G+
Subjt:  VSDRDPRFTSMFWPSLQKTMGTKLSFSTTFHSQTDRQPRGN

A0A438CV82 Integrase catalytic domain-containing protein2.7e-0868.63Show/hide
Query:  VSDRDPRFTSMFWPSLQKTMGTKLSFSTTFHSQTDRQPRGNRLSVRAKVLV
        VSDRDPRFTS FW SLQK +GTKLSFST FHSQTD Q    RL+V    L+
Subjt:  VSDRDPRFTSMFWPSLQKTMGTKLSFSTTFHSQTDRQPRGNRLSVRAKVLV

A0A5A7UAH6 CCHC-type domain-containing protein2.8e-1047.06Show/hide
Query:  PRGNRLSVRAKVLVLTVEIELPVPDNLPLSVRSSTRLIFRTWVEFYRKS------------------ICKTGSTCIVREVNDVCWLHAVCRAKLAGSSGG
        PRGNR ++    L  TVEIELPVPD LP S  SS +    TW+E Y +S                  +C  GS  IVR  +D+CWLHAV  AK AGS GG
Subjt:  PRGNRLSVRAKVLVLTVEIELPVPDNLPLSVRSSTRLIFRTWVEFYRKS------------------ICKTGSTCIVREVNDVCWLHAVCRAKLAGSSGG

Query:  GV
        GV
Subjt:  GV

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein4.5e-0851.32Show/hide
Query:  GSTSIVRQVNDV-CWLHSICRAKLAGS---------LGGVSDRDPRFTSMFWPSLQKTMGTKLSFSTTFHSQTDRQ
        GST + R +    CW   +  AKL G          +  VSDRDPRFTS FWPS+QK MGTKL FST FH  TD Q
Subjt:  GSTSIVRQVNDV-CWLHSICRAKLAGS---------LGGVSDRDPRFTSMFWPSLQKTMGTKLSFSTTFHSQTDRQ

A0A5D3CAC6 Uncharacterized protein9.2e-0951.72Show/hide
Query:  TVEIELPVPDNLPLSVRSSTRLIFRTWVE-----FYRKSICKTGSTC--------IVREVNDVCWLHAVCRAKLAGSSGGGVTRTTY
        ++EIEL VPD LP S  SS      TW+E     FY+ S  +T S          IVRE NDVCWLHAV RAK+AG SGGGVT  +Y
Subjt:  TVEIELPVPDNLPLSVRSSTRLIFRTWVE-----FYRKSICKTGSTC--------IVREVNDVCWLHAVCRAKLAGSSGGGVTRTTY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGACATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGTCTGATAACCTGCCATATATAGTATGCTTATCAGGTAAAAT
AGGGTCAACAAGTATCGTTAGACAGGTGAACGATGTCTGTTGGCTTCACTCTATCTGCCGAGCTAAGTTAGCTGGTAGCTTGGGAGGGGTTTCAGATAGGGACCCGAGAT
TTACTTCTATGTTTTGGCCTAGCTTACAGAAAACTATGGGGACAAAGCTGAGTTTTAGTACAACATTTCATTCTCAGACAGATAGACAGCCAAGAGGAAATAGGTTGAGT
GTACGGGCTAAGGTTCTAGTTCTAACAGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATTGTCTGTTCGAAGCTCCACGAGGTTGATATTTCGTACGTGGGTGGA
GTTCTATAGGAAGTCTATATGTAAAACAGGGTCAACATGTATCGTTAGAGAGGTGAACGATGTCTGTTGGCTTCACGCTGTCTGCCGGGCTAAGTTAGCTGGTAGCTCGG
GAGGGGGTGTGACAAGAACAACCTATCTAATTCCCTTATTCAGGAATGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGACATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGTCTGATAACCTGCCATATATAGTATGCTTATCAGGTAAAAT
AGGGTCAACAAGTATCGTTAGACAGGTGAACGATGTCTGTTGGCTTCACTCTATCTGCCGAGCTAAGTTAGCTGGTAGCTTGGGAGGGGTTTCAGATAGGGACCCGAGAT
TTACTTCTATGTTTTGGCCTAGCTTACAGAAAACTATGGGGACAAAGCTGAGTTTTAGTACAACATTTCATTCTCAGACAGATAGACAGCCAAGAGGAAATAGGTTGAGT
GTACGGGCTAAGGTTCTAGTTCTAACAGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATTGTCTGTTCGAAGCTCCACGAGGTTGATATTTCGTACGTGGGTGGA
GTTCTATAGGAAGTCTATATGTAAAACAGGGTCAACATGTATCGTTAGAGAGGTGAACGATGTCTGTTGGCTTCACGCTGTCTGCCGGGCTAAGTTAGCTGGTAGCTCGG
GAGGGGGTGTGACAAGAACAACCTATCTAATTCCCTTATTCAGGAATGTGTGA
Protein sequenceShow/hide protein sequence
MTETLSPRLYGTVCTQVEIELPVSDNLPYIVCLSGKIGSTSIVRQVNDVCWLHSICRAKLAGSLGGVSDRDPRFTSMFWPSLQKTMGTKLSFSTTFHSQTDRQPRGNRLS
VRAKVLVLTVEIELPVPDNLPLSVRSSTRLIFRTWVEFYRKSICKTGSTCIVREVNDVCWLHAVCRAKLAGSSGGGVTRTTYLIPLFRNV