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Tan0010413 (gene) of Snake gourd v1 genome

Gene IDTan0010413
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG09:32564495..32564806
RNA-Seq ExpressionTan0010413
SyntenyTan0010413
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.0e-1856.73Show/hide
Query:  MARGGKRGRQVEAGTQEATGD--RGREVSEGESSHPQQEVNIEEQIITRITQRLAESVGSSQADPEKKYDIERLKALVATTFEGTTDPADAEVWLNLIEK
        M RG  R +  +A T  A  +   G   S+ ESS P  E N+EEQ++ R+ QRL   + S+Q+DPEKKY IERLKAL ATTF GTT+PADAE WL LIEK
Subjt:  MARGGKRGRQVEAGTQEATGD--RGREVSEGESSHPQQEVNIEEQIITRITQRLAESVGSSQADPEKKYDIERLKALVATTFEGTTDPADAEVWLNLIEK

Query:  CFRV
        CFRV
Subjt:  CFRV

KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.5e-1753.4Show/hide
Query:  MARGGKRGR-QVEAGTQEATGDRGREVSEGESSHPQQEVNIEEQIITRITQRLAESVGSSQADPEKKYDIERLKALVATTFEGTTDPADAEVWLNLIEKC
        M RG  R     EA         G   S+ ESS P+ E N+EEQ++ R+ QRL   + S+Q+DPEKKY  ERLKAL ATTF GTT+P D E WL LIEKC
Subjt:  MARGGKRGR-QVEAGTQEATGDRGREVSEGESSHPQQEVNIEEQIITRITQRLAESVGSSQADPEKKYDIERLKALVATTFEGTTDPADAEVWLNLIEKC

Query:  FRV
        FRV
Subjt:  FRV

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]1.5e-1753.4Show/hide
Query:  MARGGKRGR-QVEAGTQEATGDRGREVSEGESSHPQQEVNIEEQIITRITQRLAESVGSSQADPEKKYDIERLKALVATTFEGTTDPADAEVWLNLIEKC
        M RG  R     EA         G   S+ ESS P+ E N+EEQ++ R+ QRL   + S+Q+DPEKKY  ERLKAL ATTF GTT+P D E WL LIEKC
Subjt:  MARGGKRGR-QVEAGTQEATGDRGREVSEGESSHPQQEVNIEEQIITRITQRLAESVGSSQADPEKKYDIERLKALVATTFEGTTDPADAEVWLNLIEKC

Query:  FRV
        FRV
Subjt:  FRV

WP_217833179.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]5.2e-1875.38Show/hide
Query:  VSEGESSHPQQEVNIEEQIITRITQRLAESVGSSQADPEKKYDIERLKALVATTFEGTTDPADAE
        +SEGESSHPQ EVN+EEQ+ TRI QRLA S+GS ++DPEKKY IERLKAL ATTFEGT DP +AE
Subjt:  VSEGESSHPQQEVNIEEQIITRITQRLAESVGSSQADPEKKYDIERLKALVATTFEGTTDPADAE

XP_038896416.1 uncharacterized protein LOC120084680 [Benincasa hispida]1.5e-1773.44Show/hide
Query:  IEEQIITRITQRLAESVGSSQADPEKKYDIERLKALVATTFEGTTDPADAEVWLNLIEKCFRVM
        +E+++  RITQRLA SVGS Q DPEKK+ IERLKAL ATTF+GTTDP DAE+WL LIEKCF+VM
Subjt:  IEEQIITRITQRLAESVGSSQADPEKKYDIERLKALVATTFEGTTDPADAEVWLNLIEKCFRVM

TrEMBL top hitse value%identityAlignment
A0A5A7SJ99 DNA/RNA polymerases superfamily protein5.2e-1654.95Show/hide
Query:  EAGTQEATGDRGREVSEGESSHPQQEVNIEEQIITRITQRLAESVGSSQADPEKKYDIERLKALVATTFEGTTDPADAEVWLNLIEKCFRV
        EA         G   S+ ESS P  E N+EEQ++ R+ QRL   +  +Q+D EKKY IERLKAL ATTF GTT+P DAE WL LIEKCF+V
Subjt:  EAGTQEATGDRGREVSEGESSHPQQEVNIEEQIITRITQRLAESVGSSQADPEKKYDIERLKALVATTFEGTTDPADAEVWLNLIEKCFRV

A0A5A7T1M0 Reverse transcriptase7.3e-1853.4Show/hide
Query:  MARGGKRGR-QVEAGTQEATGDRGREVSEGESSHPQQEVNIEEQIITRITQRLAESVGSSQADPEKKYDIERLKALVATTFEGTTDPADAEVWLNLIEKC
        M RG  R     EA         G   S+ ESS P+ E N+EEQ++ R+ QRL   + S+Q+DPEKKY  ERLKAL ATTF GTT+P D E WL LIEKC
Subjt:  MARGGKRGR-QVEAGTQEATGDRGREVSEGESSHPQQEVNIEEQIITRITQRLAESVGSSQADPEKKYDIERLKALVATTFEGTTDPADAEVWLNLIEKC

Query:  FRV
        FRV
Subjt:  FRV

A0A5A7ULX5 DNA/RNA polymerases superfamily protein4.0e-1651.92Show/hide
Query:  MARGGKRGRQV-EAGTQEATGDRGREVSEGESSHPQQEVNIEEQIITRITQRLAESVGSSQADPEKKYDIERLKALVATTFEGTTDPADAEVWLNLIEKC
        M RG  R R V EA           E  + ESS P  E N+EEQ++ R+ QR    + S+Q+D EKK++IERLKAL +TTF  TT+PA+AE WL LIEKC
Subjt:  MARGGKRGRQV-EAGTQEATGDRGREVSEGESSHPQQEVNIEEQIITRITQRLAESVGSSQADPEKKYDIERLKALVATTFEGTTDPADAEVWLNLIEKC

Query:  FRVM
        FRVM
Subjt:  FRVM

A0A5D3BB91 Reverse transcriptase7.3e-1853.4Show/hide
Query:  MARGGKRGR-QVEAGTQEATGDRGREVSEGESSHPQQEVNIEEQIITRITQRLAESVGSSQADPEKKYDIERLKALVATTFEGTTDPADAEVWLNLIEKC
        M RG  R     EA         G   S+ ESS P+ E N+EEQ++ R+ QRL   + S+Q+DPEKKY  ERLKAL ATTF GTT+P D E WL LIEKC
Subjt:  MARGGKRGR-QVEAGTQEATGDRGREVSEGESSHPQQEVNIEEQIITRITQRLAESVGSSQADPEKKYDIERLKALVATTFEGTTDPADAEVWLNLIEKC

Query:  FRV
        FRV
Subjt:  FRV

A0A5D3DES5 DNA/RNA polymerases superfamily protein1.5e-1856.73Show/hide
Query:  MARGGKRGRQVEAGTQEATGD--RGREVSEGESSHPQQEVNIEEQIITRITQRLAESVGSSQADPEKKYDIERLKALVATTFEGTTDPADAEVWLNLIEK
        M RG  R +  +A T  A  +   G   S+ ESS P  E N+EEQ++ R+ QRL   + S+Q+DPEKKY IERLKAL ATTF GTT+PADAE WL LIEK
Subjt:  MARGGKRGRQVEAGTQEATGD--RGREVSEGESSHPQQEVNIEEQIITRITQRLAESVGSSQADPEKKYDIERLKALVATTFEGTTDPADAEVWLNLIEK

Query:  CFRV
        CFRV
Subjt:  CFRV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGGCCGGAACTCAAGAAGCTACTGGTGATAGAGGAAGAGAGGTATCAGAGGGAGAGTCTAGTCATCCTCAACAAGA
GGTGAACATAGAGGAACAGATCATTACGAGGATAACTCAAAGATTGGCTGAAAGTGTTGGATCATCACAAGCAGATCCAGAAAAGAAGTATGACATTGAAAGACTAAAGG
CCTTAGTTGCAACAACATTTGAAGGCACGACAGATCCCGCTGATGCTGAGGTTTGGTTAAATCTGATTGAGAAGTGTTTTAGGGTCATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGGCCGGAACTCAAGAAGCTACTGGTGATAGAGGAAGAGAGGTATCAGAGGGAGAGTCTAGTCATCCTCAACAAGA
GGTGAACATAGAGGAACAGATCATTACGAGGATAACTCAAAGATTGGCTGAAAGTGTTGGATCATCACAAGCAGATCCAGAAAAGAAGTATGACATTGAAAGACTAAAGG
CCTTAGTTGCAACAACATTTGAAGGCACGACAGATCCCGCTGATGCTGAGGTTTGGTTAAATCTGATTGAGAAGTGTTTTAGGGTCATGTGA
Protein sequenceShow/hide protein sequence
MARGGKRGRQVEAGTQEATGDRGREVSEGESSHPQQEVNIEEQIITRITQRLAESVGSSQADPEKKYDIERLKALVATTFEGTTDPADAEVWLNLIEKCFRVM