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Tan0010414 (gene) of Snake gourd v1 genome

Gene IDTan0010414
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG09:21326808..21330105
RNA-Seq ExpressionTan0010414
SyntenyTan0010414
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025985.1 reverse transcriptase [Cucumis melo var. makuwa]7.3e-0646.97Show/hide
Query:  KVEIKLPVPYIL--LSSAESSTSFDTLYVGDVYLSKVNNVCWFHAVFRAKLAGSAGGGVTTWYQSS
        +VEI+LPVP  L  L    S     +  +G   +++ ++VCW H VFRAK  G +GGGV+TWYQSS
Subjt:  KVEIKLPVPYIL--LSSAESSTSFDTLYVGDVYLSKVNNVCWFHAVFRAKLAGSAGGGVTTWYQSS

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]5.0e-0743.81Show/hide
Query:  GISTSFLLMRFIGFQKVEIKLPVPYILLSSAESSTS---------FDTLYVGDVY------------------LSKVNNVCWFHAVFRAKLAGSAGGGVT
        G +TSF  M F  F  VEI+LPVP IL +SAESS S         F++++V   Y                  + + ++VCW HA+FRAK AG  GGGVT
Subjt:  GISTSFLLMRFIGFQKVEIKLPVPYILLSSAESSTS---------FDTLYVGDVY------------------LSKVNNVCWFHAVFRAKLAGSAGGGVT

Query:  TWYQS
        TWYQS
Subjt:  TWYQS

TYK00845.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]3.6e-0555.17Show/hide
Query:  EIKLPVPYILLSSAESSTSFDTLYVGDVYLSKVNNVCWFHAVFRAKLAGSAGGGVTTW
        EI+LPVP  L +SAESS S ++   G V   + ++VCW HA+FRAK+ G  GGGVTTW
Subjt:  EIKLPVPYILLSSAESSTSFDTLYVGDVYLSKVNNVCWFHAVFRAKLAGSAGGGVTTW

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]5.0e-0743.81Show/hide
Query:  GISTSFLLMRFIGFQKVEIKLPVPYILLSSAESSTS---------FDTLYVGDVY------------------LSKVNNVCWFHAVFRAKLAGSAGGGVT
        G +TSF  M F  F  VEI+LPVP IL +SAESS S         F++++V   Y                  + + ++VCW HA+FRAK AG  GGGVT
Subjt:  GISTSFLLMRFIGFQKVEIKLPVPYILLSSAESSTS---------FDTLYVGDVY------------------LSKVNNVCWFHAVFRAKLAGSAGGGVT

Query:  TWYQS
        TWYQS
Subjt:  TWYQS

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]9.5e-0656.45Show/hide
Query:  VEIKLPVPYILLSSAESSTSFDTLYVGDVYLSKVNNVCWFHAVFRAKLAGSAGGGVTTWYQS
        VEI+LPV   L +SAESS S ++   G V   + ++VCW H+VFRAK A   GGGVTTWYQS
Subjt:  VEIKLPVPYILLSSAESSTSFDTLYVGDVYLSKVNNVCWFHAVFRAKLAGSAGGGVTTWYQS

TrEMBL top hitse value%identityAlignment
A0A5A7SNE5 Reverse transcriptase3.5e-0646.97Show/hide
Query:  KVEIKLPVPYIL--LSSAESSTSFDTLYVGDVYLSKVNNVCWFHAVFRAKLAGSAGGGVTTWYQSS
        +VEI+LPVP  L  L    S     +  +G   +++ ++VCW H VFRAK  G +GGGV+TWYQSS
Subjt:  KVEIKLPVPYIL--LSSAESSTSFDTLYVGDVYLSKVNNVCWFHAVFRAKLAGSAGGGVTTWYQSS

A0A5A7T7M6 Reverse transcriptase2.4e-0743.81Show/hide
Query:  GISTSFLLMRFIGFQKVEIKLPVPYILLSSAESSTS---------FDTLYVGDVY------------------LSKVNNVCWFHAVFRAKLAGSAGGGVT
        G +TSF  M F  F  VEI+LPVP IL +SAESS S         F++++V   Y                  + + ++VCW HA+FRAK AG  GGGVT
Subjt:  GISTSFLLMRFIGFQKVEIKLPVPYILLSSAESSTS---------FDTLYVGDVY------------------LSKVNNVCWFHAVFRAKLAGSAGGGVT

Query:  TWYQS
        TWYQS
Subjt:  TWYQS

A0A5D3BSA6 Retrotrans_gag domain-containing protein1.8e-0555.74Show/hide
Query:  VEIKLPVPYILLSSAESSTSFDTLYVGDVYLSKVNNVCWFHAVFRAKLAGSAGGGVTTWYQ
        VEI+LPV   L  SAESS S ++   G V   + ++VCW H VFR K AG  GGGVTTWYQ
Subjt:  VEIKLPVPYILLSSAESSTSFDTLYVGDVYLSKVNNVCWFHAVFRAKLAGSAGGGVTTWYQ

A0A5D3BTP3 Reverse transcriptase2.4e-0743.81Show/hide
Query:  GISTSFLLMRFIGFQKVEIKLPVPYILLSSAESSTS---------FDTLYVGDVY------------------LSKVNNVCWFHAVFRAKLAGSAGGGVT
        G +TSF  M F  F  VEI+LPVP IL +SAESS S         F++++V   Y                  + + ++VCW HA+FRAK AG  GGGVT
Subjt:  GISTSFLLMRFIGFQKVEIKLPVPYILLSSAESSTS---------FDTLYVGDVY------------------LSKVNNVCWFHAVFRAKLAGSAGGGVT

Query:  TWYQS
        TWYQS
Subjt:  TWYQS

A0A5D3CU23 Retrotrans_gag domain-containing protein4.6e-0656.45Show/hide
Query:  VEIKLPVPYILLSSAESSTSFDTLYVGDVYLSKVNNVCWFHAVFRAKLAGSAGGGVTTWYQS
        VEI+LPV   L +SAESS S ++   G V   + ++VCW H+VFRAK A   GGGVTTWYQS
Subjt:  VEIKLPVPYILLSSAESSTSFDTLYVGDVYLSKVNNVCWFHAVFRAKLAGSAGGGVTTWYQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAGAATCTTCTTCAATCTCTTGAGAGAATTTTCTGTCAAATCCGAGACATCACTTGTTTTTGTGGAAACGAATCTGGAAACAGCAGAAGTCTATTTTTAGGGAA
GGAGCTTTCGAGGTATTTTCGAACCAATCAGTTGGGAATTTCAACTTCATTTCTTCTCATGCGTTTTATAGGGTTCCAAAAGGTTGAGATCAAGCTCCCGGTGCCTTACA
TCCTGCTATCGTCTGCTGAAAGCTCCACGAGTTTTGATACTTTGTACGTGGGTGATGTTTATTTGTCAAAGGTAAACAATGTATGTTGGTTTCACGCCGTCTTCCGGGCT
AAGTTAGCAGGTAGTGCGGGAGGGGGTGTCACAACTTGGTATCAGAGTAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAGAATCTTCTTCAATCTCTTGAGAGAATTTTCTGTCAAATCCGAGACATCACTTGTTTTTGTGGAAACGAATCTGGAAACAGCAGAAGTCTATTTTTAGGGAA
GGAGCTTTCGAGGTATTTTCGAACCAATCAGTTGGGAATTTCAACTTCATTTCTTCTCATGCGTTTTATAGGGTTCCAAAAGGTTGAGATCAAGCTCCCGGTGCCTTACA
TCCTGCTATCGTCTGCTGAAAGCTCCACGAGTTTTGATACTTTGTACGTGGGTGATGTTTATTTGTCAAAGGTAAACAATGTATGTTGGTTTCACGCCGTCTTCCGGGCT
AAGTTAGCAGGTAGTGCGGGAGGGGGTGTCACAACTTGGTATCAGAGTAGTTAG
Protein sequenceShow/hide protein sequence
MEENLLQSLERIFCQIRDITCFCGNESGNSRSLFLGKELSRYFRTNQLGISTSFLLMRFIGFQKVEIKLPVPYILLSSAESSTSFDTLYVGDVYLSKVNNVCWFHAVFRA
KLAGSAGGGVTTWYQSS