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Tan0010473 (gene) of Snake gourd v1 genome

Gene IDTan0010473
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionsigma factor binding protein 2, chloroplastic-like
Genome locationLG08:40349974..40350594
RNA-Seq ExpressionTan0010473
SyntenyTan0010473
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008443611.1 PREDICTED: uncharacterized protein LOC103487167 [Cucumis melo]4.0e-2351.45Show/hide
Query:  MDQNLVVNDV--QAMMKKETRKRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDAEFPDPTSTKFHSGSVNAPETNLKKK----QEEDDEE
        MD+ L+V+++      KK+T ++ K+ ++  QPLKVVYI+NPMRV TSA+EFRALVQELTGRDAEFPDP  +KF+  S      +L+KK    Q EDDE+
Subjt:  MDQNLVVNDV--QAMMKKETRKRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDAEFPDPTSTKFHSGSVNAPETNLKKK----QEEDDEE

Query:  ELLLDLAAMEDSSDDFLGGSYKSLEDVFMRDIMEKLAA
        ELL+D        DDF   S++SLED+  RD+ME   A
Subjt:  ELLLDLAAMEDSSDDFLGGSYKSLEDVFMRDIMEKLAA

XP_011652185.1 uncharacterized protein LOC105434994 [Cucumis sativus]2.3e-2350.72Show/hide
Query:  MDQNLVVNDVQAMMKKETR--KRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDAEFPDPTSTKFHSGSVNAPETNLKKK----QEEDDEE
        MD++L+V+++   MKK T+  ++ K+ ++  QPLKVVYI+NPMRV TSA+EFRALVQELTGRDAEFPDPT     S      + +++KK    + E+DE+
Subjt:  MDQNLVVNDVQAMMKKETR--KRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDAEFPDPTSTKFHSGSVNAPETNLKKK----QEEDDEE

Query:  ELLLDLAAMEDSSDDFLGGSYKSLEDVFMRDIMEKLAA
        ELL+D        DDFL  SY+SLED+  RD+ME   A
Subjt:  ELLLDLAAMEDSSDDFLGGSYKSLEDVFMRDIMEKLAA

XP_022147780.1 sigma factor binding protein 2, chloroplastic-like [Momordica charantia]1.8e-3163.91Show/hide
Query:  MDQNLVVNDVQAMMKKETRKRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDAEFPDPTSTKFHSGSVNAPETNLKKKQEEDDEEELLLDL
        MD+NL+V++++  MKKETRKR K S QKNQPLKVVYI+NPMRV TSA+EFRALVQELTGRDAEFPDP   KFH  S++  E NL+K +E DD+EE  LD+
Subjt:  MDQNLVVNDVQAMMKKETRKRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDAEFPDPTSTKFHSGSVNAPETNLKKKQEEDDEEELLLDL

Query:  A-AMEDSSDDFLGGSYKSLEDVFMRD-IMEKLA
        A  MEDS+DDFL   Y+S E++ MR+ +ME  A
Subjt:  A-AMEDSSDDFLGGSYKSLEDVFMRD-IMEKLA

XP_022941301.1 uncharacterized protein LOC111446639 [Cucurbita moschata]1.2e-3062.41Show/hide
Query:  MDQNLVVNDVQAMMKKETRKRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDA-EFPDPTSTKFHSGSVNAPETNLKKKQEEDDEEELLLD
        M+ +LV  DV+   +KE R+  K  D+KNQPLKVVYI+NPMRVQ SAAEFR LVQELTG+DA +FP   S    S SV  PETN++K Q++DD+E+LLL 
Subjt:  MDQNLVVNDVQAMMKKETRKRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDA-EFPDPTSTKFHSGSVNAPETNLKKKQEEDDEEELLLD

Query:  LAAMEDSSDDFLGGSYKSLEDVFMRDIMEKLAA
         AAMEDSSD FLGGSY+S E +FMRD+++KLAA
Subjt:  LAAMEDSSDDFLGGSYKSLEDVFMRDIMEKLAA

XP_023539403.1 uncharacterized protein LOC111800056 [Cucurbita pepo subsp. pepo]7.0e-2859.85Show/hide
Query:  MDQNLVVNDVQAMMKKETRKRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDA-EFPDPTSTKFHSGSVNAPETNLKKKQ--EEDDEEELL
        M+ +LV  DV+   K+  RKR K  D+KNQPLKVVYI+NPMRVQ SAAEFR LVQ+LTG+DA +FP        S SV  PETN++K Q  ++DD+++LL
Subjt:  MDQNLVVNDVQAMMKKETRKRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDA-EFPDPTSTKFHSGSVNAPETNLKKKQ--EEDDEEELL

Query:  LDLAA--MEDSSDDFLGGSYKSLEDVFMRDIMEKLAA
        L  AA  MEDSSDDFLGGSY+SLE +FMRD++++LAA
Subjt:  LDLAA--MEDSSDDFLGGSYKSLEDVFMRDIMEKLAA

TrEMBL top hitse value%identityAlignment
A0A0A0LFH5 VQ domain-containing protein1.1e-2350.72Show/hide
Query:  MDQNLVVNDVQAMMKKETR--KRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDAEFPDPTSTKFHSGSVNAPETNLKKK----QEEDDEE
        MD++L+V+++   MKK T+  ++ K+ ++  QPLKVVYI+NPMRV TSA+EFRALVQELTGRDAEFPDPT     S      + +++KK    + E+DE+
Subjt:  MDQNLVVNDVQAMMKKETR--KRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDAEFPDPTSTKFHSGSVNAPETNLKKK----QEEDDEE

Query:  ELLLDLAAMEDSSDDFLGGSYKSLEDVFMRDIMEKLAA
        ELL+D        DDFL  SY+SLED+  RD+ME   A
Subjt:  ELLLDLAAMEDSSDDFLGGSYKSLEDVFMRDIMEKLAA

A0A1S3B8H6 uncharacterized protein LOC1034871671.9e-2351.45Show/hide
Query:  MDQNLVVNDV--QAMMKKETRKRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDAEFPDPTSTKFHSGSVNAPETNLKKK----QEEDDEE
        MD+ L+V+++      KK+T ++ K+ ++  QPLKVVYI+NPMRV TSA+EFRALVQELTGRDAEFPDP  +KF+  S      +L+KK    Q EDDE+
Subjt:  MDQNLVVNDV--QAMMKKETRKRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDAEFPDPTSTKFHSGSVNAPETNLKKK----QEEDDEE

Query:  ELLLDLAAMEDSSDDFLGGSYKSLEDVFMRDIMEKLAA
        ELL+D        DDF   S++SLED+  RD+ME   A
Subjt:  ELLLDLAAMEDSSDDFLGGSYKSLEDVFMRDIMEKLAA

A0A5D3DPQ4 Sigma factor binding protein 21.9e-2351.45Show/hide
Query:  MDQNLVVNDV--QAMMKKETRKRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDAEFPDPTSTKFHSGSVNAPETNLKKK----QEEDDEE
        MD+ L+V+++      KK+T ++ K+ ++  QPLKVVYI+NPMRV TSA+EFRALVQELTGRDAEFPDP  +KF+  S      +L+KK    Q EDDE+
Subjt:  MDQNLVVNDV--QAMMKKETRKRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDAEFPDPTSTKFHSGSVNAPETNLKKK----QEEDDEE

Query:  ELLLDLAAMEDSSDDFLGGSYKSLEDVFMRDIMEKLAA
        ELL+D        DDF   S++SLED+  RD+ME   A
Subjt:  ELLLDLAAMEDSSDDFLGGSYKSLEDVFMRDIMEKLAA

A0A6J1D137 sigma factor binding protein 2, chloroplastic-like8.7e-3263.91Show/hide
Query:  MDQNLVVNDVQAMMKKETRKRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDAEFPDPTSTKFHSGSVNAPETNLKKKQEEDDEEELLLDL
        MD+NL+V++++  MKKETRKR K S QKNQPLKVVYI+NPMRV TSA+EFRALVQELTGRDAEFPDP   KFH  S++  E NL+K +E DD+EE  LD+
Subjt:  MDQNLVVNDVQAMMKKETRKRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDAEFPDPTSTKFHSGSVNAPETNLKKKQEEDDEEELLLDL

Query:  A-AMEDSSDDFLGGSYKSLEDVFMRD-IMEKLA
        A  MEDS+DDFL   Y+S E++ MR+ +ME  A
Subjt:  A-AMEDSSDDFLGGSYKSLEDVFMRD-IMEKLA

A0A6J1FKR4 uncharacterized protein LOC1114466395.6e-3162.41Show/hide
Query:  MDQNLVVNDVQAMMKKETRKRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDA-EFPDPTSTKFHSGSVNAPETNLKKKQEEDDEEELLLD
        M+ +LV  DV+   +KE R+  K  D+KNQPLKVVYI+NPMRVQ SAAEFR LVQELTG+DA +FP   S    S SV  PETN++K Q++DD+E+LLL 
Subjt:  MDQNLVVNDVQAMMKKETRKRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDA-EFPDPTSTKFHSGSVNAPETNLKKKQEEDDEEELLLD

Query:  LAAMEDSSDDFLGGSYKSLEDVFMRDIMEKLAA
         AAMEDSSD FLGGSY+S E +FMRD+++KLAA
Subjt:  LAAMEDSSDDFLGGSYKSLEDVFMRDIMEKLAA

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic7.1e-0744.93Show/hide
Query:  KRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDAEFPDPTSTKFHSGSVNAP---ETNLK
        K+ + S   ++P+KV YI+NPMRV+T  ++FR LVQELTG+DA    P+ T F +  ++ P   E NL+
Subjt:  KRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDAEFPDPTSTKFHSGSVNAP---ETNLK

Q9LDH1 Sigma factor binding protein 1, chloroplastic4.2e-0755.1Show/hide
Query:  MKKETRKRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDA
        + +++ K+ K +   N+P+KV YI+NPMRVQT A++FR LVQELTG+DA
Subjt:  MKKETRKRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDA

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein5.1e-0844.93Show/hide
Query:  KRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDAEFPDPTSTKFHSGSVNAP---ETNLK
        K+ + S   ++P+KV YI+NPMRV+T  ++FR LVQELTG+DA    P+ T F +  ++ P   E NL+
Subjt:  KRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDAEFPDPTSTKFHSGSVNAP---ETNLK

AT3G56710.1 sigma factor binding protein 13.0e-0855.1Show/hide
Query:  MKKETRKRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDA
        + +++ K+ K +   N+P+KV YI+NPMRVQT A++FR LVQELTG+DA
Subjt:  MKKETRKRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCAAAATTTAGTTGTGAATGACGTGCAAGCGATGATGAAAAAAGAAACAAGAAAAAGAATTAAAACGTCGGATCAGAAGAACCAACCCCTGAAAGTTGTGTACAT
AGCGAACCCCATGAGGGTTCAAACCAGCGCAGCTGAATTTAGAGCCTTGGTCCAAGAACTCACGGGCCGAGATGCCGAATTCCCGGACCCGACTTCGACTAAGTTTCATT
CAGGCTCGGTCAATGCTCCGGAGACGAATCTTAAGAAGAAACAAGAAGAGGATGATGAAGAAGAACTATTGCTTGATTTGGCTGCAATGGAGGATTCTAGTGATGATTTT
CTTGGGGGTTCGTATAAGAGTTTGGAGGATGTTTTTATGAGGGATATAATGGAGAAATTGGCGGCATGA
mRNA sequenceShow/hide mRNA sequence
TAATTACATTCACTATTTTCAGATATCTATATATGTATTATATATTTCCTGGAAATCTCGTAGCTTATATATTTTGCAGGCACTGAATAACTTTCCCCCCGCCGAAACCC
CCAAATCCCAAACCGATCTAAAAAATGGATCAAAATTTAGTTGTGAATGACGTGCAAGCGATGATGAAAAAAGAAACAAGAAAAAGAATTAAAACGTCGGATCAGAAGAA
CCAACCCCTGAAAGTTGTGTACATAGCGAACCCCATGAGGGTTCAAACCAGCGCAGCTGAATTTAGAGCCTTGGTCCAAGAACTCACGGGCCGAGATGCCGAATTCCCGG
ACCCGACTTCGACTAAGTTTCATTCAGGCTCGGTCAATGCTCCGGAGACGAATCTTAAGAAGAAACAAGAAGAGGATGATGAAGAAGAACTATTGCTTGATTTGGCTGCA
ATGGAGGATTCTAGTGATGATTTTCTTGGGGGTTCGTATAAGAGTTTGGAGGATGTTTTTATGAGGGATATAATGGAGAAATTGGCGGCATGACTCATAAACCTTCATAT
CAGGTAATTCGGAAGGCTGTTTATTTATCAACTTTATTTGCAAATAAAACATTATTGTATCTCTTTCCACT
Protein sequenceShow/hide protein sequence
MDQNLVVNDVQAMMKKETRKRIKTSDQKNQPLKVVYIANPMRVQTSAAEFRALVQELTGRDAEFPDPTSTKFHSGSVNAPETNLKKKQEEDDEEELLLDLAAMEDSSDDF
LGGSYKSLEDVFMRDIMEKLAA