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Tan0010519 (gene) of Snake gourd v1 genome

Gene IDTan0010519
OrganismTrichosanthes anguina (Snake gourd v1)
Description60S ribosomal protein L18a-like protein
Genome locationLG07:23769879..23773614
RNA-Seq ExpressionTan0010519
SyntenyTan0010519
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044804 - AT1G29970-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147407.1 60S ribosomal protein L18a-like protein [Cucumis sativus]1.7e-7384.91Show/hide
Query:  MSGDGKRSAVFGDPQNQYHYGTFQGVANYYSS----APQPQPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGW
        MSGDGK + VFGDP +QYHYGTFQGVANYY+S     PQPQPQS VGFPQPVA P VSGH PCYHGHLGYQAVPVQGYAI+EGRPFQEARLPCCGIG+GW
Subjt:  MSGDGKRSAVFGDPQNQYHYGTFQGVANYYSS----APQPQPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGW

Query:  FLFMIGFFLGGIPWYVGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW
        FLFMIGFFLGGIPWYVGAFIVLF+R+DYREKPGYVAC IASVLA IAITFGIT G E W
Subjt:  FLFMIGFFLGGIPWYVGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW

XP_008444018.1 PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]1.0e-7385.53Show/hide
Query:  MSGDGKRSAVFGDPQNQYHYGTFQGVANYYSS----APQPQPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGW
        MSGDGK S VFGDP +QYHYGTFQGVANYY+S     PQPQPQS VGFPQPVA P VSGH PCYHGHLGYQAVPVQGYAI+EGRPFQEARLPCCGIG+GW
Subjt:  MSGDGKRSAVFGDPQNQYHYGTFQGVANYYSS----APQPQPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGW

Query:  FLFMIGFFLGGIPWYVGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW
        FLFMIGFFLGGIPWYVGAFIVLF+R+DYREKPGYVAC IASVLA IAITFGIT G E W
Subjt:  FLFMIGFFLGGIPWYVGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW

XP_022140257.1 60S ribosomal protein L18a-like protein [Momordica charantia]1.3e-7385.53Show/hide
Query:  MSGDGKRSAVFGDPQNQYHYGTFQGVANYYSSA----PQPQPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGW
        MSGDGK SAV GDPQ+QYHYGTFQGVANYY SA    PQPQP S VGFPQPVA P VSG HP YHGHLGYQAVPVQGYAIIEGRP+QEARLPCCGIG+GW
Subjt:  MSGDGKRSAVFGDPQNQYHYGTFQGVANYYSSA----PQPQPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGW

Query:  FLFMIGFFLGGIPWYVGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW
        FLF+IGFFLGGIPWYVGAFIVLF+R+DYREKPGYVACVIASVLA +AITFG+TKGAE W
Subjt:  FLFMIGFFLGGIPWYVGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW

XP_022927552.1 60S ribosomal protein L18a-like protein [Cucurbita moschata]1.9e-6981.13Show/hide
Query:  MSGDGKRSAVFGDPQNQYHYGTFQGVANYYSSAPQPQ----PQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGW
        MSGDGK SAVFGDPQ+QYHYGTFQGVANYYSSAP+PQ    PQS VGFP  VA P     HPCYHGHL YQAVPVQGYAIIEGRPF EARLPCCGIG+GW
Subjt:  MSGDGKRSAVFGDPQNQYHYGTFQGVANYYSSAPQPQ----PQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGW

Query:  FLFMIGFFLGGIPWYVGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW
        FLFMIGFFLGGIPWYVGAF+VLF+R+DYREKPGY+AC IASVLA +AITFG++KG E W
Subjt:  FLFMIGFFLGGIPWYVGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW

XP_038895475.1 60S ribosomal protein L18a-like protein [Benincasa hispida]7.4e-7789.68Show/hide
Query:  MSGDGKRSAVFGDPQNQYHYGTFQGVANYYSSAPQPQPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGWFLFM
        MSGDGK SAVFGDPQ+QYHYGTFQGVANYYSSAPQ QPQSFVGFPQPV   GVSGHHPCYHGHLGYQAVPVQGYAIIE RPF+EARLPCCGIG+GWFLFM
Subjt:  MSGDGKRSAVFGDPQNQYHYGTFQGVANYYSSAPQPQPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGWFLFM

Query:  IGFFLGGIPWYVGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW
        IGFFLGGIPWYVGAFIVLF+R+DYREKPGYVAC IASVLA IAITFGIT G E W
Subjt:  IGFFLGGIPWYVGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW

TrEMBL top hitse value%identityAlignment
A0A0A0M051 Uncharacterized protein8.2e-7484.91Show/hide
Query:  MSGDGKRSAVFGDPQNQYHYGTFQGVANYYSS----APQPQPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGW
        MSGDGK + VFGDP +QYHYGTFQGVANYY+S     PQPQPQS VGFPQPVA P VSGH PCYHGHLGYQAVPVQGYAI+EGRPFQEARLPCCGIG+GW
Subjt:  MSGDGKRSAVFGDPQNQYHYGTFQGVANYYSS----APQPQPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGW

Query:  FLFMIGFFLGGIPWYVGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW
        FLFMIGFFLGGIPWYVGAFIVLF+R+DYREKPGYVAC IASVLA IAITFGIT G E W
Subjt:  FLFMIGFFLGGIPWYVGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW

A0A1S3B9D9 60S ribosomal protein L18a-like protein4.8e-7485.53Show/hide
Query:  MSGDGKRSAVFGDPQNQYHYGTFQGVANYYSS----APQPQPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGW
        MSGDGK S VFGDP +QYHYGTFQGVANYY+S     PQPQPQS VGFPQPVA P VSGH PCYHGHLGYQAVPVQGYAI+EGRPFQEARLPCCGIG+GW
Subjt:  MSGDGKRSAVFGDPQNQYHYGTFQGVANYYSS----APQPQPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGW

Query:  FLFMIGFFLGGIPWYVGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW
        FLFMIGFFLGGIPWYVGAFIVLF+R+DYREKPGYVAC IASVLA IAITFGIT G E W
Subjt:  FLFMIGFFLGGIPWYVGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW

A0A6J1CGC1 60S ribosomal protein L18a-like protein6.3e-7485.53Show/hide
Query:  MSGDGKRSAVFGDPQNQYHYGTFQGVANYYSSA----PQPQPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGW
        MSGDGK SAV GDPQ+QYHYGTFQGVANYY SA    PQPQP S VGFPQPVA P VSG HP YHGHLGYQAVPVQGYAIIEGRP+QEARLPCCGIG+GW
Subjt:  MSGDGKRSAVFGDPQNQYHYGTFQGVANYYSSA----PQPQPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGW

Query:  FLFMIGFFLGGIPWYVGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW
        FLF+IGFFLGGIPWYVGAFIVLF+R+DYREKPGYVACVIASVLA +AITFG+TKGAE W
Subjt:  FLFMIGFFLGGIPWYVGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW

A0A6J1EHH7 60S ribosomal protein L18a-like protein9.4e-7081.13Show/hide
Query:  MSGDGKRSAVFGDPQNQYHYGTFQGVANYYSSAPQPQ----PQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGW
        MSGDGK SAVFGDPQ+QYHYGTFQGVANYYSSAP+PQ    PQS VGFP  VA P     HPCYHGHL YQAVPVQGYAIIEGRPF EARLPCCGIG+GW
Subjt:  MSGDGKRSAVFGDPQNQYHYGTFQGVANYYSSAPQPQ----PQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGW

Query:  FLFMIGFFLGGIPWYVGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW
        FLFMIGFFLGGIPWYVGAF+VLF+R+DYREKPGY+AC IASVLA +AITFG++KG E W
Subjt:  FLFMIGFFLGGIPWYVGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW

A0A6J1KIR0 60S ribosomal protein L18a-like protein4.7e-6981.13Show/hide
Query:  MSGDGKRSAVFGDPQNQYHYGTFQGVANYYSSAPQPQ----PQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGW
        MS DGK SAVFGDPQ+QYHYGTFQGVANYYSSAPQPQ    PQS VGFP  VA P     HPCYHGHL YQAVPVQGYAIIEGRPF EARLPCCGIG+GW
Subjt:  MSGDGKRSAVFGDPQNQYHYGTFQGVANYYSSAPQPQ----PQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGW

Query:  FLFMIGFFLGGIPWYVGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW
        FLFMIGFFLGGIPWYVGAF+VLF+R+DYREKPGY+AC IASVLA +AITFG++KG E W
Subjt:  FLFMIGFFLGGIPWYVGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW

SwissProt top hitse value%identityAlignment
Q8L9S1 60S ribosomal protein L18a-like protein2.2e-3149.31Show/hide
Query:  QNQYHYGTFQGVANYYSSAPQP---QPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGWFLFMIGFFLGGIPWY
        Q+QY+YGTFQGVAN+ +  P P   QPQ  +      A   + GH    +   G+  V V  Y ++E RP  E  LPCCG+G+GWFLF++GF  GGIPWY
Subjt:  QNQYHYGTFQGVANYYSSAPQP---QPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGWFLFMIGFFLGGIPWY

Query:  VGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW
        +GAFIVL   +D+REK GYVAC IASV+  IA+  G+T     W
Subjt:  VGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW

Arabidopsis top hitse value%identityAlignment
AT1G17080.1 Ribosomal protein L18ae family9.7e-4357.96Show/hide
Query:  GDGKRSAVFGDPQ-NQYH-YGTFQGVANYYSSAPQPQPQSFV-GFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGWFLF
        G+  +S  F   + NQ+H YGTFQGV+NY    P PQ  + V GFPQP A PGV      Y+ H GYQ VPV G  + EGRP ++ RLPCCGIG+GWFLF
Subjt:  GDGKRSAVFGDPQ-NQYH-YGTFQGVANYYSSAPQPQPQSFV-GFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGWFLF

Query:  MIGFFLGGIPWYVGAFIVLF-LRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW
        ++GFFLG IPWYVG FI++F  RIDYREKPGY+AC IA++LA IA+  G++KGA+ W
Subjt:  MIGFFLGGIPWYVGAFIVLF-LRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW

AT1G29970.1 60S ribosomal protein L18A-11.6e-3249.31Show/hide
Query:  QNQYHYGTFQGVANYYSSAPQP---QPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGWFLFMIGFFLGGIPWY
        Q+QY+YGTFQGVAN+ +  P P   QPQ  +      A   + GH    +   G+  V V  Y ++E RP  E  LPCCG+G+GWFLF++GF  GGIPWY
Subjt:  QNQYHYGTFQGVANYYSSAPQP---QPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGWFLFMIGFFLGGIPWY

Query:  VGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW
        +GAFIVL   +D+REK GYVAC IASV+  IA+  G+T     W
Subjt:  VGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW

AT1G29970.2 60S ribosomal protein L18A-11.8e-2851.2Show/hide
Query:  QNQYHYGTFQGVANYYSSAPQP---QPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGWFLFMIGFFLGGIPWY
        Q+QY+YGTFQGVAN+ +  P P   QPQ  +      A   + GH    +   G+  V V  Y ++E RP  E  LPCCG+G+GWFLF++GF  GGIPWY
Subjt:  QNQYHYGTFQGVANYYSSAPQP---QPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGWFLFMIGFFLGGIPWY

Query:  VGAFIVLFLRIDYREKPGYVACVIA
        +GAFIVL   +D+REK GYVAC IA
Subjt:  VGAFIVLFLRIDYREKPGYVACVIA

AT1G29970.3 60S ribosomal protein L18A-12.2e-2638.17Show/hide
Query:  QNQYHYGTFQGVANYYSSAPQP---QPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGWFL-------------
        Q+QY+YGTFQGVAN+ +  P P   QPQ  +      A   + GH    +   G+  V V  Y ++E RP  E  LPCCG+G+GWFL             
Subjt:  QNQYHYGTFQGVANYYSSAPQP---QPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGWFL-------------

Query:  -----------------------------FMIGFFLGGIPWYVGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW
                                     F++GF  GGIPWY+GAFIVL   +D+REK GYVAC IASV+  IA+  G+T     W
Subjt:  -----------------------------FMIGFFLGGIPWYVGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW

AT1G53560.1 Ribosomal protein L18ae family1.1e-3351.43Show/hide
Query:  YGTFQGVANY----YSSAPQPQPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGWFLFMIGFFLGGIPWYVGAF
        YGTFQGV  Y    Y   P   P   +G PQP   PG   H    H ++  +   V GY + +GRP ++ RLPCCG+G+GWFLF+IGF LG IPWYVG F
Subjt:  YGTFQGVANY----YSSAPQPQPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGWFLFMIGFFLGGIPWYVGAF

Query:  IVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW
        I++  RID REKPGYVAC IA+V+A I I FG+  G   W
Subjt:  IVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGGCGACGGGAAAAGAAGCGCGGTATTTGGCGATCCACAGAATCAATACCATTACGGTACGTTTCAGGGCGTCGCAAATTATTATTCTTCTGCCCCACAACCGCA
GCCCCAATCTTTCGTCGGTTTCCCTCAGCCGGTTGCGCTGCCCGGAGTTTCTGGCCACCACCCTTGTTACCATGGACATCTCGGTTATCAAGCCGTTCCAGTCCAAGGTT
ATGCTATCATTGAGGGAAGACCTTTTCAAGAAGCCCGTCTTCCTTGCTGTGGCATTGGCATCGGCTGGTTCTTGTTCATGATTGGTTTCTTTCTTGGTGGTATTCCCTGG
TATGTTGGAGCTTTTATTGTACTCTTTCTACGGATCGATTACCGAGAGAAGCCTGGATATGTTGCATGTGTAATCGCTTCAGTTCTTGCCTTCATTGCTATAACATTTGG
TATCACCAAGGGAGCTGAGTTCTGGTGA
mRNA sequenceShow/hide mRNA sequence
TTCCAATTCCGCCCGGTTGGAGCAAATATTGTCAGCTGTACAACTCCAATTCATCAAAATCAGAAGATCGCCGCCATATTAAAAACCGGAAACAACCTTTGTCCAAAAAA
AAAAAAAAAAGGGACACAACCACTCTCTTTCCGCCATAGCTCCGTCGCTCCAAAATTTTCCGGCGAAACCGCAGAAGAAGAAGAGAAAAGCGACGATGGGACCCTCGTCG
TCGCCTTCACTTTCAAGATACCGTCTCTAATTCTTCATCTGGAAGTAATATGAGTGGCGACGGGAAAAGAAGCGCGGTATTTGGCGATCCACAGAATCAATACCATTACG
GTACGTTTCAGGGCGTCGCAAATTATTATTCTTCTGCCCCACAACCGCAGCCCCAATCTTTCGTCGGTTTCCCTCAGCCGGTTGCGCTGCCCGGAGTTTCTGGCCACCAC
CCTTGTTACCATGGACATCTCGGTTATCAAGCCGTTCCAGTCCAAGGTTATGCTATCATTGAGGGAAGACCTTTTCAAGAAGCCCGTCTTCCTTGCTGTGGCATTGGCAT
CGGCTGGTTCTTGTTCATGATTGGTTTCTTTCTTGGTGGTATTCCCTGGTATGTTGGAGCTTTTATTGTACTCTTTCTACGGATCGATTACCGAGAGAAGCCTGGATATG
TTGCATGTGTAATCGCTTCAGTTCTTGCCTTCATTGCTATAACATTTGGTATCACCAAGGGAGCTGAGTTCTGGTGAAGTTGTAATTAGCTTTGAAATTGTATTCTTTCA
ATCTCTATATATCAACTTATTGGTTTCCTTTACCATATACTGAAATTTTCCTGACTTCCCAAATATGAAGTGTTAATAGATTGAAGAAGAAATTAAAATTAATTAATAGC
TTTATTGGAAGGGTATTCTTTTTTTAAAAAAATCTTTT
Protein sequenceShow/hide protein sequence
MSGDGKRSAVFGDPQNQYHYGTFQGVANYYSSAPQPQPQSFVGFPQPVALPGVSGHHPCYHGHLGYQAVPVQGYAIIEGRPFQEARLPCCGIGIGWFLFMIGFFLGGIPW
YVGAFIVLFLRIDYREKPGYVACVIASVLAFIAITFGITKGAEFW