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Tan0010558 (gene) of Snake gourd v1 genome

Gene IDTan0010558
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDynein light chain
Genome locationLG10:9075613..9078365
RNA-Seq ExpressionTan0010558
SyntenyTan0010558
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR019763 - Dynein light chain, type 1/2, conserved site
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022945423.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]1.2e-5594.02Show/hide
Query:  MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MNHD KRSNP PLMVKPES+DRKPSSAA VGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAE IKKEFDKRHGPTWHC++GRNFGSYVTHETNH
Subjt:  MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_022955505.1 dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita moschata]1.5e-5089.83Show/hide
Query:  MNHDPKRSNPGPLMVKPESDDRKPSS-AAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETN
        MN + KRSNP PLMVKPES+DRK SS AAA  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAE IKKEFD+RHGPTWHCIVGRNFGSYVTHE+N
Subjt:  MNHDPKRSNPGPLMVKPESDDRKPSS-AAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETN

Query:  HFVYFYLDQKAVLLFKSG
        HFVYFYLDQKAVLLFKSG
Subjt:  HFVYFYLDQKAVLLFKSG

XP_022973755.1 dynein light chain 1, cytoplasmic-like isoform X1 [Cucurbita maxima]1.5e-5393.16Show/hide
Query:  MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MNHD KRSNP  LMVKPES+DRKPSSAA VGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAE IKKEFDKRHGPTWHC++GRNFGSYVTHETNH
Subjt:  MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_022979977.1 dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita maxima]8.9e-5188.89Show/hide
Query:  MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MN + KRSNP PLMVKPES+DRK SS AA  KKIVIKSADMFG MQKEAVDIAIAAFEKHSVEKDVAE IKKEFD+RHGPTWHCIVGRNFGSYVTHE+NH
Subjt:  MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_038904701.1 dynein light chain 1, cytoplasmic-like [Benincasa hispida]6.2e-5288.89Show/hide
Query:  MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MN +  RSNP PLMVKPESDDRKPSSAAAV KKIVIKSADMF DMQKEA+DIAIAAFEKHSVEKD+AE IKK+FDK HGPTWHCIVGRNFGSYVTHETNH
Subjt:  MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKA+LLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

TrEMBL top hitse value%identityAlignment
A0A6J1C8U0 Dynein light chain1.6e-5086.32Show/hide
Query:  MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MN D KR+NP  LMVKPES+DRKPSSA  + +K+VIKSADMFGDMQKEAVDIAIAAFEK++VEKDVAE IK+EFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1G0U9 Dynein light chain5.8e-5694.02Show/hide
Query:  MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MNHD KRSNP PLMVKPES+DRKPSSAA VGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAE IKKEFDKRHGPTWHC++GRNFGSYVTHETNH
Subjt:  MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1GVA3 Dynein light chain7.4e-5189.83Show/hide
Query:  MNHDPKRSNPGPLMVKPESDDRKPSS-AAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETN
        MN + KRSNP PLMVKPES+DRK SS AAA  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAE IKKEFD+RHGPTWHCIVGRNFGSYVTHE+N
Subjt:  MNHDPKRSNPGPLMVKPESDDRKPSS-AAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETN

Query:  HFVYFYLDQKAVLLFKSG
        HFVYFYLDQKAVLLFKSG
Subjt:  HFVYFYLDQKAVLLFKSG

A0A6J1IC60 Dynein light chain7.1e-5493.16Show/hide
Query:  MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MNHD KRSNP  LMVKPES+DRKPSSAA VGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAE IKKEFDKRHGPTWHC++GRNFGSYVTHETNH
Subjt:  MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1IQ69 Dynein light chain4.3e-5188.89Show/hide
Query:  MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MN + KRSNP PLMVKPES+DRK SS AA  KKIVIKSADMFG MQKEAVDIAIAAFEKHSVEKDVAE IKKEFD+RHGPTWHCIVGRNFGSYVTHE+NH
Subjt:  MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

SwissProt top hitse value%identityAlignment
Q22799 Dynein light chain 1, cytoplasmic4.8e-3169.32Show/hide
Query:  VGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        V +K VIK+ADM  DMQ++A+D A  A EK+++EKD+A  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  VGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q3MHR3 Dynein light chain 2, cytoplasmic1.1e-3070.93Show/hide
Query:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q78P75 Dynein light chain 2, cytoplasmic1.1e-3070.93Show/hide
Query:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q96FJ2 Dynein light chain 2, cytoplasmic1.1e-3070.93Show/hide
Query:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q9D0M5 Dynein light chain 2, cytoplasmic1.1e-3070.93Show/hide
Query:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Arabidopsis top hitse value%identityAlignment
AT1G23220.1 Dynein light chain type 1 family protein1.2e-1342.86Show/hide
Query:  IKSADMFGDMQKEAVDIA---IAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS
        ++++DM    Q  A  ++   + A    +  K +A  +KK+FD  +GP WHCIVG +FGSYVTH T  F+YF +D+  VLLFK+
Subjt:  IKSADMFGDMQKEAVDIA---IAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS

AT1G52240.2 RHO guanyl-nucleotide exchange factor 118.7e-1241.18Show/hide
Query:  KIVIKSADMFGDMQKEAVDIAIAAFEKHSVE--KDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK
        K +++ +DM   MQ +A+  A  A +   V   K +A  IKKEFD+R+G  W C+VG NFG + TH    F+YF L+    L+FK
Subjt:  KIVIKSADMFGDMQKEAVDIAIAAFEKHSVE--KDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK

AT4G15930.1 Dynein light chain type 1 family protein2.2e-3970.09Show/hide
Query:  KRSNPGPLMVKPESDDRKPS-----SAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        K+S  G    +   DDR+ S     ++   GK+ VIKSADM  DMQKEA++IAI+AFEK+SVEKD+AE IKKEFDK+HG TWHCIVGRNFGSYVTHETNH
Subjt:  KRSNPGPLMVKPESDDRKPS-----SAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

AT4G27360.1 Dynein light chain type 1 family protein1.9e-1140Show/hide
Query:  KIVIKSADMFGDMQKEAVDIAIAAFEKHSVEK--DVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK
        K V+   DM   M+++A+ +A  A +   V +   +A  IKKEFD+ +G  W CIVG +FGS+VTH +  F++F +    +LLFK
Subjt:  KIVIKSADMFGDMQKEAVDIAIAAFEKHSVEK--DVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK

AT5G20110.1 Dynein light chain type 1 family protein1.3e-1548.04Show/hide
Query:  ESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIA---IAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLF
        E D      AAA    + I +ADM G MQ  A   A   + + EK S  K +A  +KKEFDK +GP WHCIVG +FGS+VTH T  F+YF +D+  VLLF
Subjt:  ESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIA---IAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLF

Query:  KS
        K+
Subjt:  KS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCACGATCCCAAGCGAAGCAATCCTGGACCTTTAATGGTCAAGCCCGAATCTGACGATCGCAAACCCTCTTCTGCCGCCGCCGTCGGCAAGAAAATCGTTATCAA
GAGCGCCGATATGTTCGGAGACATGCAGAAGGAGGCTGTTGACATTGCCATAGCCGCATTTGAGAAGCATTCCGTCGAGAAGGATGTTGCCGAGCTCATAAAGAAGGAGT
TCGATAAGCGGCATGGCCCGACCTGGCATTGCATCGTCGGTCGTAATTTTGGTTCCTATGTGACACACGAGACAAACCATTTTGTTTACTTCTACCTGGATCAGAAAGCA
GTTTTACTTTTCAAATCTGGTTGA
mRNA sequenceShow/hide mRNA sequence
AAAAAGAAAAAACTTAAAATGACTGGGCCTCGGGAATCTTACAGAAGAGACGCAGAGGGATAGTGGTTGAGAGTGAGAGCCTTTCTTCTCCCTCTTCTTCTTCTTCCTCT
CTCTCTCTCTCTGTTCATCTCTTACCAGCTACCACCAAACCAAATATATTCCCAAAACCTTCACAACAACATGAACCACGATCCCAAGCGAAGCAATCCTGGACCTTTAA
TGGTCAAGCCCGAATCTGACGATCGCAAACCCTCTTCTGCCGCCGCCGTCGGCAAGAAAATCGTTATCAAGAGCGCCGATATGTTCGGAGACATGCAGAAGGAGGCTGTT
GACATTGCCATAGCCGCATTTGAGAAGCATTCCGTCGAGAAGGATGTTGCCGAGCTCATAAAGAAGGAGTTCGATAAGCGGCATGGCCCGACCTGGCATTGCATCGTCGG
TCGTAATTTTGGTTCCTATGTGACACACGAGACAAACCATTTTGTTTACTTCTACCTGGATCAGAAAGCAGTTTTACTTTTCAAATCTGGTTGATGATTGTTCTCCCCTT
GACAAAGATGCCACCAACTACTTTGGCATGGTGAGTCTGCGATAACAATGCTACGACAAGTTCTTGTATGTATAATCTAGTCTGCTGCCAATATGTAAATCACTTGTTGT
AGCGTTTTTTATATCATAACTTAATATATCACTGGGGAGTAGATTAAATGATGAAACGAGAAATGCAATGTGCCATTTACATAAATGTCTCAAAAGGTTTCTTTGTCAAT
CTCATTAAAACAGAAGGTTGCAGTACAGGACCAATCTTCAAAAAAAGGGGGAAAAAAATGCTGTACCATTGGCCCAATGGTCAATGTCTCCTGAAAATTTTGTCATTATG
TCTTGATAGATGAGTTTACGGTGGTTTTTAATGGGTTTTGGTGGTTAAATTTTCAACTACTGGCTCTGAAATATGCCTTGGAAGTTGATCTATAGAAGAGTAAATGCACC
ATTTTAGTACAAGATGGGGTGTTGACTGGAATTTTGAAACAAGAAGAATTTATGTACTGTTACTAAATAAAGGAAGGAGTTAAGGCTCTCTTTCTTTCACTCTTTGGTAC
TAAAGAAATGAGATTCTGGAG
Protein sequenceShow/hide protein sequence
MNHDPKRSNPGPLMVKPESDDRKPSSAAAVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAELIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKA
VLLFKSG