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Tan0010571 (gene) of Snake gourd v1 genome

Gene IDTan0010571
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG03:26050634..26063268
RNA-Seq ExpressionTan0010571
SyntenyTan0010571
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025985.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-0757.97Show/hide
Query:  YKVEIELPVPDNLPYYVYVYILVYYAYPVKKRSTGIVREVNDVCWLHAVCWTKLPGSSGGGVTTWYQSS
        ++VEIELPVPD LP   Y    V  A  V   S GI RE +DVCWLH V   K  G SGGGV+TWYQSS
Subjt:  YKVEIELPVPDNLPYYVYVYILVYYAYPVKKRSTGIVREVNDVCWLHAVCWTKLPGSSGGGVTTWYQSS

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]7.9e-0540.22Show/hide
Query:  YKVEIELPVPDNLP----------------YYVYVYILVYYAYPVKKR--------STGIVREVNDVCWLHAVCWTKLPGSSGGGVTTWYQS
        + VEIELPVPD LP                Y+  V++ ++Y   ++ +        S  IVR  +DVCWLHA+   K  G  GGGVTTWYQS
Subjt:  YKVEIELPVPDNLP----------------YYVYVYILVYYAYPVKKR--------STGIVREVNDVCWLHAVCWTKLPGSSGGGVTTWYQS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]7.9e-0540.22Show/hide
Query:  YKVEIELPVPDNLP----------------YYVYVYILVYYAYPVKKR--------STGIVREVNDVCWLHAVCWTKLPGSSGGGVTTWYQS
        + VEIELPVPD LP                Y+  V++ ++Y   ++ +        S  IVR  +DVCWLHA+   K  G  GGGVTTWYQS
Subjt:  YKVEIELPVPDNLP----------------YYVYVYILVYYAYPVKKR--------STGIVREVNDVCWLHAVCWTKLPGSSGGGVTTWYQS

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]1.0e-0457.38Show/hide
Query:  VEIELPVPDNLPYYVYVYILVYYA-YPVKKRSTGIVREVNDVCWLHAVCWTKLPGSSGGGV
        VEIELPVPD LP   Y    V  A Y   + S GIVR  +DVCWLHAVC  K+ G  GGGV
Subjt:  VEIELPVPDNLPYYVYVYILVYYA-YPVKKRSTGIVREVNDVCWLHAVCWTKLPGSSGGGV

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]3.5e-0551.52Show/hide
Query:  VEIELPVPDNLPYYVYVYILVYYAYPVKKRSTGIVREVNDVCWLHAVCWTKLPGSSGGGVTTWYQS
        VEIELPV D LP           +     RS GIVR  +DVCWLH+V   K     GGGVTTWYQS
Subjt:  VEIELPVPDNLPYYVYVYILVYYAYPVKKRSTGIVREVNDVCWLHAVCWTKLPGSSGGGVTTWYQS

TrEMBL top hitse value%identityAlignment
A0A5A7SNE5 Reverse transcriptase1.1e-0757.97Show/hide
Query:  YKVEIELPVPDNLPYYVYVYILVYYAYPVKKRSTGIVREVNDVCWLHAVCWTKLPGSSGGGVTTWYQSS
        ++VEIELPVPD LP   Y    V  A  V   S GI RE +DVCWLH V   K  G SGGGV+TWYQSS
Subjt:  YKVEIELPVPDNLPYYVYVYILVYYAYPVKKRSTGIVREVNDVCWLHAVCWTKLPGSSGGGVTTWYQSS

A0A5A7T7M6 Reverse transcriptase3.8e-0540.22Show/hide
Query:  YKVEIELPVPDNLP----------------YYVYVYILVYYAYPVKKR--------STGIVREVNDVCWLHAVCWTKLPGSSGGGVTTWYQS
        + VEIELPVPD LP                Y+  V++ ++Y   ++ +        S  IVR  +DVCWLHA+   K  G  GGGVTTWYQS
Subjt:  YKVEIELPVPDNLP----------------YYVYVYILVYYAYPVKKR--------STGIVREVNDVCWLHAVCWTKLPGSSGGGVTTWYQS

A0A5D3BTP3 Reverse transcriptase3.8e-0540.22Show/hide
Query:  YKVEIELPVPDNLP----------------YYVYVYILVYYAYPVKKR--------STGIVREVNDVCWLHAVCWTKLPGSSGGGVTTWYQS
        + VEIELPVPD LP                Y+  V++ ++Y   ++ +        S  IVR  +DVCWLHA+   K  G  GGGVTTWYQS
Subjt:  YKVEIELPVPDNLP----------------YYVYVYILVYYAYPVKKR--------STGIVREVNDVCWLHAVCWTKLPGSSGGGVTTWYQS

A0A5D3CJL4 Retrotrans_gag domain-containing protein5.0e-0557.38Show/hide
Query:  VEIELPVPDNLPYYVYVYILVYYA-YPVKKRSTGIVREVNDVCWLHAVCWTKLPGSSGGGV
        VEIELPVPD LP   Y    V  A Y   + S GIVR  +DVCWLHAVC  K+ G  GGGV
Subjt:  VEIELPVPDNLPYYVYVYILVYYA-YPVKKRSTGIVREVNDVCWLHAVCWTKLPGSSGGGV

A0A5D3CU23 Retrotrans_gag domain-containing protein1.7e-0551.52Show/hide
Query:  VEIELPVPDNLPYYVYVYILVYYAYPVKKRSTGIVREVNDVCWLHAVCWTKLPGSSGGGVTTWYQS
        VEIELPV D LP           +     RS GIVR  +DVCWLH+V   K     GGGVTTWYQS
Subjt:  VEIELPVPDNLPYYVYVYILVYYAYPVKKRSTGIVREVNDVCWLHAVCWTKLPGSSGGGVTTWYQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCATCTACGAAGTTATTAGTCCTTACTGTCAACGGTGTTACATCAGTAGGTCTAATAATTCACGGTCCAGTGTTGTACAAACTCATTGCACAGGATGCCCCCACTC
GCATGTCAACCACATGAACGAGTCAGATCACCTCGATCACAGTGTTTGTATCAAATACAAAGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATATTATGTTTATG
TGTACATTCTAGTTTATTATGCTTATCCGGTAAAAAAAAGGTCAACAGGTATCGTTAGAGAGGTGAACGATGTCTGTTGGCTTCATGCCGTCTGCTGGACTAAGTTACCA
GGTAGTTCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTCATCTACGAAGTTATTAGTCCTTACTGTCAACGGTGTTACATCAGTAGGTCTAATAATTCACGGTCCAGTGTTGTACAAACTCATTGCACAGGATGCCCCCACTC
GCATGTCAACCACATGAACGAGTCAGATCACCTCGATCACAGTGTTTGTATCAAATACAAAGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATATTATGTTTATG
TGTACATTCTAGTTTATTATGCTTATCCGGTAAAAAAAAGGTCAACAGGTATCGTTAGAGAGGTGAACGATGTCTGTTGGCTTCATGCCGTCTGCTGGACTAAGTTACCA
GGTAGTTCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
Protein sequenceShow/hide protein sequence
MVIYEVISPYCQRCYISRSNNSRSSVVQTHCTGCPHSHVNHMNESDHLDHSVCIKYKVEIELPVPDNLPYYVYVYILVYYAYPVKKRSTGIVREVNDVCWLHAVCWTKLP
GSSGGGVTTWYQSS