; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0010598 (gene) of Snake gourd v1 genome

Gene IDTan0010598
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGRF-type domain-containing protein
Genome locationLG10:16316548..16316979
RNA-Seq ExpressionTan0010598
SyntenyTan0010598
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR010666 - Zinc finger, GRF-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6468846.1 hypothetical protein ZIOFF_073539 [Zingiber officinale]5.3e-1157.14Show/hide
Query:  YCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLREEACQLK
        YCGLRA L+TSWT+ NPGRRF+ CS Y     GC FF W DPE++E SK +IN+L+    +LK
Subjt:  YCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLREEACQLK

KAG6478655.1 hypothetical protein ZIOFF_062099 [Zingiber officinale]5.3e-1159.65Show/hide
Query:  CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLR
        CYCGLRA L+TSWT+ NPGRRF+ C  Y     GC FF W DPE +E SK +IN+L+
Subjt:  CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLR

KAG6514370.1 hypothetical protein ZIOFF_024723 [Zingiber officinale]1.2e-1050Show/hide
Query:  CYCGLRARLRTSWTKRNPGRRFYGCSCYNGN----NSGCQFFHWFDPEVAEHSKEVINKLREEACQLKKIHKRLRL
        C+CGLRA L+TSWT+ NPGR F+ C  Y  +    N+GC FF W DPE++E SK +IN       +LK I+K+L+L
Subjt:  CYCGLRARLRTSWTKRNPGRRFYGCSCYNGN----NSGCQFFHWFDPEVAEHSKEVINKLREEACQLKKIHKRLRL

KAG6514840.1 hypothetical protein ZIOFF_025214 [Zingiber officinale]4.1e-1152.78Show/hide
Query:  CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLREEACQLKKIHKRLRL
        C+CGLRA L+TSWT+ NPGRRF+ C  Y     GC FF W DPE++E SK +IN       +LK I+K+L+L
Subjt:  CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLREEACQLKKIHKRLRL

KAG6527582.1 hypothetical protein ZIOFF_009697 [Zingiber officinale]5.3e-1156.25Show/hide
Query:  CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLREEACQLK
        CYCGLRA L+TSWT+ NP RRF+ C  Y     GC FF W DPEV+E SK +IN+L+    +LK
Subjt:  CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLREEACQLK

TrEMBL top hitse value%identityAlignment
A0A5B7ACY3 GRF-type domain-containing protein1.7e-1045.12Show/hide
Query:  YCYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVI-------NKLREEACQLKKIHKRLRLVE
        YC+CG RA +RTSWT  NPGRRF+GC   +G++SGC FF+W+DP +   +++VI        +L  E  +L+    RLR  E
Subjt:  YCYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVI-------NKLREEACQLKKIHKRLRLVE

A0A6J5W0A5 GRF-type domain-containing protein3.7e-1050Show/hide
Query:  CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVIN----KLREEACQLKKIHKRL
        C+CG + RL TSWT  N GRRF+GCS Y G   GC FF W+DP+V E SK VI+    +LR+E  + +K+ K +
Subjt:  CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVIN----KLREEACQLKKIHKRL

A0A6P5ETD2 uncharacterized protein LOC1097090713.7e-1040.38Show/hide
Query:  NSIRTHNSSSN-NTMYCYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSG-CQFFHWFDPEVAEHSKEVI-------NKLREEACQLKKIHKRLRLVEFL
        +S  T +S SN +T  C+CGL   ++TSWT+ NPGRRFYGC  Y    S  C +F W+DP+    S  ++       NKLREEA    K  +R   +  +
Subjt:  NSIRTHNSSSN-NTMYCYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSG-CQFFHWFDPEVAEHSKEVI-------NKLREEACQLKKIHKRLRLVEFL

Query:  YRVV
        Y +V
Subjt:  YRVV

A0A6V7NYI1 GRF-type domain-containing protein2.8e-1056.92Show/hide
Query:  CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLREEACQLKK
        C+CGL+A  RTS T  NPGRRFYGC  Y  N  GC FF W DPE+ E  KE I +L E+  +LKK
Subjt:  CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLREEACQLKK

M5WFX5 GRF-type domain-containing protein (Fragment)4.4e-1150Show/hide
Query:  CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVI----NKLREEACQLKKIHKRL
        C+CG + RL TSWT  NPGRRF+GC+ Y G   GC FF W+DP+V E SK VI     +LR+E  + +K+ K++
Subjt:  CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVI----NKLREEACQLKKIHKRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G07505.1 zinc ion binding4.6e-0536Show/hide
Query:  CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLREEACQLKKIHKRLRLVEF
        C CG    LRTS T +NP R FY C C   N SG   F   D  + E  ++++ K+ E       + K L+ +EF
Subjt:  CYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLREEACQLKKIHKRLRLVEF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAACTACGATGGAAGTTTAAATTCCATAAGAACTCACAACAGTTCGAGCAACAACACTATGTACTGTTACTGTGGTTTACGAGCTCGATTGAGAACTTCTTGGAC
GAAGAGGAATCCTGGTCGAAGATTTTATGGGTGTTCTTGTTACAATGGGAATAATTCAGGATGTCAATTTTTCCATTGGTTTGATCCAGAAGTTGCAGAGCATAGCAAAG
AAGTCATCAATAAATTAAGAGAGGAAGCTTGTCAATTGAAGAAGATTCATAAACGGTTACGCCTAGTAGAGTTCTTATATCGTGTAGTAATTGTAGTATTGGTGGGAATA
ATTGTGTATTTGGGTGTTTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATAACTACGATGGAAGTTTAAATTCCATAAGAACTCACAACAGTTCGAGCAACAACACTATGTACTGTTACTGTGGTTTACGAGCTCGATTGAGAACTTCTTGGAC
GAAGAGGAATCCTGGTCGAAGATTTTATGGGTGTTCTTGTTACAATGGGAATAATTCAGGATGTCAATTTTTCCATTGGTTTGATCCAGAAGTTGCAGAGCATAGCAAAG
AAGTCATCAATAAATTAAGAGAGGAAGCTTGTCAATTGAAGAAGATTCATAAACGGTTACGCCTAGTAGAGTTCTTATATCGTGTAGTAATTGTAGTATTGGTGGGAATA
ATTGTGTATTTGGGTGTTTGTTAG
Protein sequenceShow/hide protein sequence
MNNYDGSLNSIRTHNSSSNNTMYCYCGLRARLRTSWTKRNPGRRFYGCSCYNGNNSGCQFFHWFDPEVAEHSKEVINKLREEACQLKKIHKRLRLVEFLYRVVIVVLVGI
IVYLGVC