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Tan0010600 (gene) of Snake gourd v1 genome

Gene IDTan0010600
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionYcf15
Genome locationLG10:29984247..29984524
RNA-Seq ExpressionTan0010600
SyntenyTan0010600
Gene Ontology termsGO:0009536 - plastid (cellular component)
InterPro domainsIPR019645 - Uncharacterised protein family Ycf15


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABQ14816.1 Ycf15 [Cercidiphyllum japonicum]1.5e-1261.64Show/hide
Query:  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
        N LLLKHGRIEI     MYGWYEL             ITHYI +FPLMKDVN LENQKY C MKWLLLS  ++
Subjt:  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
ABQ14824.1 Ycf15 [Daphniphyllum sp. 205-82]1.9e-1261.64Show/hide
Query:  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
        N LLLKHGRIEI     MYGWYEL             ITHYI +FPLMKDVN LENQKY C MKWLLLS  ++
Subjt:  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
ABQ14868.1 Ycf15 [Liquidambar styraciflua]1.9e-1261.64Show/hide
Query:  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
        N LLLKHGRIEI     MYGWYEL             ITHYI +FPLMKDVN LENQKY C MKWLLLS  ++
Subjt:  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
ABQ14909.1 Ycf15 [Pterostemon rotundifolius]3.0e-1363.01Show/hide
Query:  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
        N LLLKHGRIEI     MYGWYEL             ITHYI +FPLMKDVN LENQKY C MKWLLLS L++
Subjt:  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
YP_007375088.1 hypothetical chloroplast RF15 [Quercus rubra]1.5e-1260Show/hide
Query:  LLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
        +LKHGRIEI    IMYGWYEL            ++THYI +FPLMKDVN LEN+KY C+MKWLLLSV ++
Subjt:  LLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
TrEMBL top hitse value%identityAlignment
A6Y9V6 Ycf157.1e-1361.64Show/hide
Query:  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
        N LLLKHGRIEI     MYGWYEL             ITHYI +FPLMKDVN LENQKY C MKWLLLS  ++
Subjt:  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
A6Y9X2 Ycf159.3e-1361.64Show/hide
Query:  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
        N LLLKHGRIEI     MYGWYEL             ITHYI +FPLMKDVN LENQKY C MKWLLLS  ++
Subjt:  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
A6YA08 Ycf159.3e-1361.64Show/hide
Query:  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
        N LLLKHGRIEI     MYGWYEL             ITHYI +FPLMKDVN LENQKY C MKWLLLS  ++
Subjt:  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
A6YA49 Ycf151.4e-1363.01Show/hide
Query:  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
        N LLLKHGRIEI     MYGWYEL             ITHYI +FPLMKDVN LENQKY C MKWLLLS L++
Subjt:  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
L7TBC8 Hypothetical chloroplast RF157.1e-1360Show/hide
Query:  LLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
        +LKHGRIEI    IMYGWYEL            ++THYI +FPLMKDVN LEN+KY C+MKWLLLSV ++
Subjt:  LLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
SwissProt top hitse value%identityAlignment
Q06GT5 Putative uncharacterized protein ycf152.4e-1359.15Show/hide
Query:  LLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
        LLLKHGRIEI     MYGWYEL             ITHYI QFPLMKDVN+LEN+K  C MKW LLS  ++
Subjt:  LLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
Q09FP9 Putative uncharacterized protein ycf153.6e-1458.9Show/hide
Query:  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
        N LLLKHGRIEI     MYGWYEL             ITHYI +FPLMK VN LEN+KY C MKWLLLS  ++
Subjt:  NKLLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
Q0ZIV7 Putative uncharacterized protein ycf153.6e-1460.56Show/hide
Query:  LLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
        LLLKHGRIEI     MYGWY+L             ITHYI +FPLMKDVN LENQKY C MKWLLLS  ++
Subjt:  LLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
Q6EVY8 Putative uncharacterized protein ycf151.2e-1259.15Show/hide
Query:  LLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
        LLLKHG IEI     MYGWYEL             ITHYI QFPLMK VN LENQK  C MKWLLLS  ++
Subjt:  LLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
Q7Y6G9 Putative uncharacterized protein ycf153.1e-1360.56Show/hide
Query:  LLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
        LLLKHGRIEI     MYGWYEL             ITHYI QFPLMK VN LENQK  C MKWLLLS  ++
Subjt:  LLLKHGRIEI---KIMYGWYEL------------VITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVS
Arabidopsis top hitse value%identityAlignment
ATCG00870.1 Protein precursor Ycf15, putative, chloroplast2.3e-1151.35Show/hide
Query:  LLLKHGRIEI---KIMYGWYELVITHYIN------------QFPLMKDVNTLENQKYTCQMKWLLLSVLVSGAL
        LLLKHGRIEI     MYGWYEL    ++N            +FPL+KD N LENQKY C++K LLLSV ++  L
Subjt:  LLLKHGRIEI---KIMYGWYELVITHYIN------------QFPLMKDVNTLENQKYTCQMKWLLLSVLVSGAL
ATCG01270.1 Protein precursor Ycf15, putative, chloroplast2.3e-1151.35Show/hide
Query:  LLLKHGRIEI---KIMYGWYELVITHYIN------------QFPLMKDVNTLENQKYTCQMKWLLLSVLVSGAL
        LLLKHGRIEI     MYGWYEL    ++N            +FPL+KD N LENQKY C++K LLLSV ++  L
Subjt:  LLLKHGRIEI---KIMYGWYELVITHYIN------------QFPLMKDVNTLENQKYTCQMKWLLLSVLVSGAL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAATAAACTACTGCTGAAACATGGAAGAATTGAAATCAAAATTATGTATGGATGGTATGAACTAGTTATTACTCACTACATCAATCAATTTCCATTAATGAAAGA
TGTAAATACATTGGAAAATCAAAAATACACATGCCAGATGAAATGGTTGTTGCTATCTGTTCTAGTATCGGGAGCTCTTTGGATATCATTTGTTGTGAAATTGAAACTAC
ATAGCTCACTGCAACTTCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCAATAAACTACTGCTGAAACATGGAAGAATTGAAATCAAAATTATGTATGGATGGTATGAACTAGTTATTACTCACTACATCAATCAATTTCCATTAATGAAAGA
TGTAAATACATTGGAAAATCAAAAATACACATGCCAGATGAAATGGTTGTTGCTATCTGTTCTAGTATCGGGAGCTCTTTGGATATCATTTGTTGTGAAATTGAAACTAC
ATAGCTCACTGCAACTTCCTTAG
Protein sequenceShow/hide protein sequence
MINKLLLKHGRIEIKIMYGWYELVITHYINQFPLMKDVNTLENQKYTCQMKWLLLSVLVSGALWISFVVKLKLHSSLQLP