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Tan0010604 (gene) of Snake gourd v1 genome

Gene IDTan0010604
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionarabinogalactan peptide 23-like
Genome locationLG06:4309356..4309547
RNA-Seq ExpressionTan0010604
SyntenyTan0010604
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581996.1 hypothetical protein SDJN03_21998, partial [Cucurbita argyrosperma subsp. sororia]2.6e-1279.66Show/hide
Query:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVA
        MEMK   CA LFAA  V+ VVASD SHSPAAAPGPSS+ASAALP LGSL+GASLVSFVA
Subjt:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVA

KAG7018419.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]4.0e-1377.78Show/hide
Query:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVACFLN
        MEMK   CA LFAA  V+ VVASD SHSPAAAPGPSS+ASAALP LGSL+GASLVSFVA  LN
Subjt:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVACFLN

KAG7025661.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-1277.78Show/hide
Query:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVACFLN
        MEMKK  CA LFAA  V+ VVASD S SPAAAPGPSS+ASAALP LGSLVGASLVSFVA + N
Subjt:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVACFLN

XP_023004714.1 arabinogalactan peptide 23-like [Cucurbita maxima]1.5e-1277.78Show/hide
Query:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVACFLN
        MEMKK  CA LFAA  V+ VVASD S SPAAAPGPSS+ASAALP LGSLVGASLVSFVA + N
Subjt:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVACFLN

XP_038899473.1 arabinogalactan protein 23-like [Benincasa hispida]2.6e-1277.78Show/hide
Query:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVACFLN
        MEMKK  CA LFAA  VS  VA+D S SPAAAPGPSS+ASAALP LGSLVGASLV+FVA FLN
Subjt:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVACFLN

TrEMBL top hitse value%identityAlignment
A0A1S3CDX5 arabinogalactan peptide 23-like5.4e-0870.31Show/hide
Query:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVAC-FLN
        MEMKK  CA LFAA  VS  VA+D S SPAAAPGPSS+ASAALP L    GAS+VSFVA  FLN
Subjt:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVAC-FLN

A0A6J1F3F5 arabinogalactan peptide 23-like1.1e-1174.6Show/hide
Query:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVACFLN
        MEMKK  CA LFAA  V+ VVASD S SPAAAPGPSS+ASA LP LGSLVGASLVS VA + N
Subjt:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVACFLN

A0A6J1H8I1 arabinogalactan peptide 23-like1.6e-1276.19Show/hide
Query:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVACFLN
        MEMKK  CA LFAA  ++ VVASD S SPAAAPGPSS+ASAALP LGSLVGASLVSFVA + N
Subjt:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVACFLN

A0A6J1IYE9 arabinogalactan peptide 23-like1.6e-1274.6Show/hide
Query:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVACFLN
        MEMK   C  LF A  V+ VVASD SHSPAAAPGPSS+ASAALP LGSL+GASLVSFVA  LN
Subjt:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVACFLN

A0A6J1KX42 arabinogalactan peptide 23-like7.3e-1377.78Show/hide
Query:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVACFLN
        MEMKK  CA LFAA  V+ VVASD S SPAAAPGPSS+ASAALP LGSLVGASLVSFVA + N
Subjt:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVACFLN

SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 235.2e-0857.14Show/hide
Query:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVACFLN
        MEMKK  C  LFAA  ++ V+A++   +P  APGP+S+ASAALP LGSLVGASLVS  + +L+
Subjt:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVACFLN

Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)9.2e-0856.25Show/hide
Query:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSS-ASAALPTLGSLVGASLVSFVACFLN
        MEMKK  C  +FAA  ++ V+A++V    A APGP++S AS A+P LGSLVGASLVS  A +LN
Subjt:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSS-ASAALPTLGSLVGASLVSFVACFLN

AT3G57690.1 arabinogalactan protein 233.7e-0957.14Show/hide
Query:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVACFLN
        MEMKK  C  LFAA  ++ V+A++   +P  APGP+S+ASAALP LGSLVGASLVS  + +L+
Subjt:  MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVACFLN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGAAGAAGTTCGTCTGCGCGACCCTTTTTGCGGCTACTGTTGTCAGCGTTGTTGTGGCCTCTGATGTGTCTCACTCTCCCGCCGCAGCGCCGGGCCCAAGCAG
CAGCGCCTCCGCCGCTCTTCCCACCCTTGGATCGCTGGTCGGCGCCTCGCTTGTTTCCTTCGTCGCCTGCTTCTTGAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGAAGAAGTTCGTCTGCGCGACCCTTTTTGCGGCTACTGTTGTCAGCGTTGTTGTGGCCTCTGATGTGTCTCACTCTCCCGCCGCAGCGCCGGGCCCAAGCAG
CAGCGCCTCCGCCGCTCTTCCCACCCTTGGATCGCTGGTCGGCGCCTCGCTTGTTTCCTTCGTCGCCTGCTTCTTGAACTAA
Protein sequenceShow/hide protein sequence
MEMKKFVCATLFAATVVSVVVASDVSHSPAAAPGPSSSASAALPTLGSLVGASLVSFVACFLN