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Tan0010704 (gene) of Snake gourd v1 genome

Gene IDTan0010704
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposon protein
Genome locationLG10:19327099..19328014
RNA-Seq ExpressionTan0010704
SyntenyTan0010704
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]1.4e-0737.69Show/hide
Query:  HSTAKGLCNKSFSHFYDLALVFDKHRATGAAVETPIDMTWNVGEHVDESIQLDDSWEYYVPIPPVSTQRMDIFQDEMH----RTPTSRNNIIGVSTSKGN
        H  AKGL +KSF ++ DL+ VF K RATGA  ET  ++  NV    +++I L DS +    IP + +Q + +  DEM        + R N   VS     
Subjt:  HSTAKGLCNKSFSHFYDLALVFDKHRATGAAVETPIDMTWNVGEHVDESIQLDDSWEYYVPIPPVSTQRMDIFQDEMH----RTPTSRNNIIGVSTSKGN

Query:  KKKFSTYQYEMVVVIRDAMDVNSSHLKMIA
        K+K  + +YE V VIR  M+  +  LK IA
Subjt:  KKKFSTYQYEMVVVIRDAMDVNSSHLKMIA

XP_022158565.1 uncharacterized protein LOC111025018 [Momordica charantia]1.2e-1136.51Show/hide
Query:  HSTAKGLCNKSFSHFYDLALVFDKHRATGAAVETPIDMTWNVGEHVDESIQLDDSWEYYVPIPPVSTQRMDIFQDEMHRTPTSRNNIIGVSTSKGNKKKF
        H  AKGL NK   H+ DL + F K RATGA ++ P+DM  +    + E     ++ ++Y+P PP+     D  ++++  TPTS+  I   ++S G+K+K 
Subjt:  HSTAKGLCNKSFSHFYDLALVFDKHRATGAAVETPIDMTWNVGEHVDESIQLDDSWEYYVPIPPVSTQRMDIFQDEMHRTPTSRNNIIGVSTSKGNKKKF

Query:  STYQYEMVVVIRDAMDVNSSHLKMIA
        S Y  EMV V+R  M + ++HL+ +A
Subjt:  STYQYEMVVVIRDAMDVNSSHLKMIA

XP_038881967.1 uncharacterized protein LOC120073288 [Benincasa hispida]1.0e-0730.6Show/hide
Query:  HSTAKGLCNKSFSHFYDLALVFDKHRATGAAVETPIDMTWNVGEHVDESIQLDDSWEYYVPIPPVSTQRMDIFQDEMHRTPTSRNNI---------IGVS
        H  AKGL NK F H+ +L+ V  K RATG   E P+ M  N+   +++ I+L  S EY  P    +    D  +++       R +I         I   
Subjt:  HSTAKGLCNKSFSHFYDLALVFDKHRATGAAVETPIDMTWNVGEHVDESIQLDDSWEYYVPIPPVSTQRMDIFQDEMHRTPTSRNNI---------IGVS

Query:  TSKGNKKKFSTYQYEMVVVIRDAMDVNSSHLKMI
        TS+G+++K  T+Q EM+ +++   D+ S+H+ ++
Subjt:  TSKGNKKKFSTYQYEMVVVIRDAMDVNSSHLKMI

XP_038899283.1 uncharacterized protein LOC120086622 [Benincasa hispida]9.1e-1241.27Show/hide
Query:  HSTAKGLCNKSFSHFYDLALVFDKHRATGAAVETPIDMTWNVGEHVDESIQLDDSWEYYVPIPPVSTQRMDIFQDEMHRTPTSRNNIIGVSTSKGNKKKF
        H   KGL NKSFS+F DLA VF K  ATG   E P DM  +V   + E    DDS E+            D+ QDE H TPT      G ++ +G+K+K 
Subjt:  HSTAKGLCNKSFSHFYDLALVFDKHRATGAAVETPIDMTWNVGEHVDESIQLDDSWEYYVPIPPVSTQRMDIFQDEMHRTPTSRNNIIGVSTSKGNKKKF

Query:  STYQYEMVVVIRDAMDVNSSHLKMIA
          Y  E+V V ++AMD  +  LK IA
Subjt:  STYQYEMVVVIRDAMDVNSSHLKMIA

XP_038899910.1 uncharacterized protein LOC120087100 [Benincasa hispida]2.1e-0831.78Show/hide
Query:  HSTAKGLCNKSFSHFYDLALVFDKHRATGAAVETPIDMTWNVGEHVDESIQLDDSWEYYVPIPPVSTQRMDIFQDEMHRTPTSRNN---IIGVSTSKGNK
        H  AKG+ NKSF H+ DL+ VF K RA G + E P  M  N     ++ I+L            V      + QDE+   P  ++     + V TS+G+K
Subjt:  HSTAKGLCNKSFSHFYDLALVFDKHRATGAAVETPIDMTWNVGEHVDESIQLDDSWEYYVPIPPVSTQRMDIFQDEMHRTPTSRNN---IIGVSTSKGNK

Query:  KKFSTYQYEMVVVIRDAMDVNSSHLKMIA
        +K  ++Q EM+ ++R  +++ S+H+  +A
Subjt:  KKFSTYQYEMVVVIRDAMDVNSSHLKMIA

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859536.6e-0837.69Show/hide
Query:  HSTAKGLCNKSFSHFYDLALVFDKHRATGAAVETPIDMTWNVGEHVDESIQLDDSWEYYVPIPPVSTQRMDIFQDEMH----RTPTSRNNIIGVSTSKGN
        H  AKGL +KSF ++ DL+ VF K RATGA  ET  ++  NV    +++I L DS +    IP + +Q + +  DEM        + R N   VS     
Subjt:  HSTAKGLCNKSFSHFYDLALVFDKHRATGAAVETPIDMTWNVGEHVDESIQLDDSWEYYVPIPPVSTQRMDIFQDEMH----RTPTSRNNIIGVSTSKGN

Query:  KKKFSTYQYEMVVVIRDAMDVNSSHLKMIA
        K+K  + +YE V VIR  M+  +  LK IA
Subjt:  KKKFSTYQYEMVVVIRDAMDVNSSHLKMIA

A0A1S3CC17 uncharacterized protein LOC1034992481.5e-0733.59Show/hide
Query:  GHSTAKGLCNKSFSHFYDLALVFDKHRATGAAVETPIDMTWNVGEHVDESIQLDDSWEYYVPIP----PVSTQRMDIFQDEMHRTPTSRNNIIGVSTSKG
        GH  A+GL NKSF +FYDL ++F + RATG   +TPI+M   +    +E     +  ++ +P P    P S        ++M  TPTS  + +G  +SK 
Subjt:  GHSTAKGLCNKSFSHFYDLALVFDKHRATGAAVETPIDMTWNVGEHVDESIQLDDSWEYYVPIP----PVSTQRMDIFQDEMHRTPTSRNNIIGVSTSKG

Query:  NKKKFSTYQYEMVVVIRDAMDVNSSHLKMIA
        +KK+ S Y  +++   R +M   S  ++ IA
Subjt:  NKKKFSTYQYEMVVVIRDAMDVNSSHLKMIA

A0A5A7U0H7 Retrotransposon protein6.6e-0837.69Show/hide
Query:  HSTAKGLCNKSFSHFYDLALVFDKHRATGAAVETPIDMTWNVGEHVDESIQLDDSWEYYVPIPPVSTQRMDIFQDEMH----RTPTSRNNIIGVSTSKGN
        H  AKGL +KSF ++ DL+ VF K RATGA  ET  ++  NV    +++I L DS +    IP + +Q + +  DEM        + R N   VS     
Subjt:  HSTAKGLCNKSFSHFYDLALVFDKHRATGAAVETPIDMTWNVGEHVDESIQLDDSWEYYVPIPPVSTQRMDIFQDEMH----RTPTSRNNIIGVSTSKGN

Query:  KKKFSTYQYEMVVVIRDAMDVNSSHLKMIA
        K+K  + +YE V VIR  M+  +  LK IA
Subjt:  KKKFSTYQYEMVVVIRDAMDVNSSHLKMIA

A0A5A7VGQ0 Retrotransposon protein1.5e-0733.59Show/hide
Query:  GHSTAKGLCNKSFSHFYDLALVFDKHRATGAAVETPIDMTWNVGEHVDESIQLDDSWEYYVPIP----PVSTQRMDIFQDEMHRTPTSRNNIIGVSTSKG
        GH  A+GL NKSF +FYDL ++F + RATG   +TPI+M   +    +E     +  ++ +P P    P S        ++M  TPTS  + +G  +SK 
Subjt:  GHSTAKGLCNKSFSHFYDLALVFDKHRATGAAVETPIDMTWNVGEHVDESIQLDDSWEYYVPIP----PVSTQRMDIFQDEMHRTPTSRNNIIGVSTSKG

Query:  NKKKFSTYQYEMVVVIRDAMDVNSSHLKMIA
        +KK+ S Y  +++   R +M   S  ++ IA
Subjt:  NKKKFSTYQYEMVVVIRDAMDVNSSHLKMIA

A0A6J1DW73 uncharacterized protein LOC1110250185.8e-1236.51Show/hide
Query:  HSTAKGLCNKSFSHFYDLALVFDKHRATGAAVETPIDMTWNVGEHVDESIQLDDSWEYYVPIPPVSTQRMDIFQDEMHRTPTSRNNIIGVSTSKGNKKKF
        H  AKGL NK   H+ DL + F K RATGA ++ P+DM  +    + E     ++ ++Y+P PP+     D  ++++  TPTS+  I   ++S G+K+K 
Subjt:  HSTAKGLCNKSFSHFYDLALVFDKHRATGAAVETPIDMTWNVGEHVDESIQLDDSWEYYVPIPPVSTQRMDIFQDEMHRTPTSRNNIIGVSTSKGNKKKF

Query:  STYQYEMVVVIRDAMDVNSSHLKMIA
        S Y  EMV V+R  M + ++HL+ +A
Subjt:  STYQYEMVVVIRDAMDVNSSHLKMIA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAGTGGTCACTCGACTGCAAAGGGGTTGTGCAACAAGTCGTTCTCCCATTTTTATGATTTAGCACTTGTCTTTGACAAACACCGAGCTACAGGTGCAGCTGTGGA
AACTCCTATAGATATGACATGGAATGTTGGAGAGCACGTAGATGAAAGTATACAATTGGACGACTCTTGGGAATACTATGTCCCAATACCACCGGTTTCAACTCAAAGAA
TGGACATATTTCAAGATGAGATGCATAGAACACCTACTAGTCGGAATAACATAATAGGTGTTTCAACATCTAAAGGCAATAAGAAGAAGTTCTCTACTTATCAATATGAG
ATGGTTGTTGTGATACGAGATGCTATGGATGTGAATTCGTCCCATCTAAAGATGATTGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGAGTGGTCACTCGACTGCAAAGGGGTTGTGCAACAAGTCGTTCTCCCATTTTTATGATTTAGCACTTGTCTTTGACAAACACCGAGCTACAGGTGCAGCTGTGGA
AACTCCTATAGATATGACATGGAATGTTGGAGAGCACGTAGATGAAAGTATACAATTGGACGACTCTTGGGAATACTATGTCCCAATACCACCGGTTTCAACTCAAAGAA
TGGACATATTTCAAGATGAGATGCATAGAACACCTACTAGTCGGAATAACATAATAGGTGTTTCAACATCTAAAGGCAATAAGAAGAAGTTCTCTACTTATCAATATGAG
ATGGTTGTTGTGATACGAGATGCTATGGATGTGAATTCGTCCCATCTAAAGATGATTGCATAG
Protein sequenceShow/hide protein sequence
MKSGHSTAKGLCNKSFSHFYDLALVFDKHRATGAAVETPIDMTWNVGEHVDESIQLDDSWEYYVPIPPVSTQRMDIFQDEMHRTPTSRNNIIGVSTSKGNKKKFSTYQYE
MVVVIRDAMDVNSSHLKMIA