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Tan0010706 (gene) of Snake gourd v1 genome

Gene IDTan0010706
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG05:32676261..32676888
RNA-Seq ExpressionTan0010706
SyntenyTan0010706
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]5.0e-0759.62Show/hide
Query:  VLTLKLEFFKEKISHILLSTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS
        +L+L+LE       ++ L TL+VLRDN+A+VS GR PLRQR+WECWA PTTS
Subjt:  VLTLKLEFFKEKISHILLSTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]4.5e-0848.65Show/hide
Query:  MAGFDLFDRPRGNRSSVRVKVLVLTLKLEFFKEKISHILLSTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS
        ++  +  + PRGNR S++ + +          +K     LSTLSVL DN+AVVS G+APLRQRRWEC  GPTTS
Subjt:  MAGFDLFDRPRGNRSSVRVKVLVLTLKLEFFKEKISHILLSTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS

KAA0040296.1 hypothetical protein E6C27_scaffold2379G00310 [Cucumis melo var. makuwa]1.1e-0653.03Show/hide
Query:  RPRGNRSSVRVKVLVLTLKLEFFKEKISHILLSTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS
        + RGNR S++   L          +K     LSTLSVLR+N+A VS GR PLRQRRWEC  GPTTS
Subjt:  RPRGNRSSVRVKVLVLTLKLEFFKEKISHILLSTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]4.5e-0848.65Show/hide
Query:  MAGFDLFDRPRGNRSSVRVKVLVLTLKLEFFKEKISHILLSTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS
        ++  +  + PRGNR S++ + +          +K     LSTLSVL DN+AVVS G+APLRQRRWEC  GPTTS
Subjt:  MAGFDLFDRPRGNRSSVRVKVLVLTLKLEFFKEKISHILLSTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS

TYK27262.1 hypothetical protein E5676_scaffold244G00290 [Cucumis melo var. makuwa]7.7e-0849.35Show/hide
Query:  RPRGNRSSVRVKVLVLTLKLEFFKEKISHIL-----------LSTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS
        + RGNR S++   L  T+  ++  E +S  L           LSTLSVLR+N+A VS GR PLRQRRWEC  GPTTS
Subjt:  RPRGNRSSVRVKVLVLTLKLEFFKEKISHIL-----------LSTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS

TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein2.4e-0759.62Show/hide
Query:  VLTLKLEFFKEKISHILLSTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS
        +L+L+LE       ++ L TL+VLRDN+A+VS GR PLRQR+WECWA PTTS
Subjt:  VLTLKLEFFKEKISHILLSTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS

A0A5A7T7M6 Reverse transcriptase2.2e-0848.65Show/hide
Query:  MAGFDLFDRPRGNRSSVRVKVLVLTLKLEFFKEKISHILLSTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS
        ++  +  + PRGNR S++ + +          +K     LSTLSVL DN+AVVS G+APLRQRRWEC  GPTTS
Subjt:  MAGFDLFDRPRGNRSSVRVKVLVLTLKLEFFKEKISHILLSTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS

A0A5A7TDY3 Uncharacterized protein5.4e-0753.03Show/hide
Query:  RPRGNRSSVRVKVLVLTLKLEFFKEKISHILLSTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS
        + RGNR S++   L          +K     LSTLSVLR+N+A VS GR PLRQRRWEC  GPTTS
Subjt:  RPRGNRSSVRVKVLVLTLKLEFFKEKISHILLSTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS

A0A5D3BTP3 Reverse transcriptase2.2e-0848.65Show/hide
Query:  MAGFDLFDRPRGNRSSVRVKVLVLTLKLEFFKEKISHILLSTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS
        ++  +  + PRGNR S++ + +          +K     LSTLSVL DN+AVVS G+APLRQRRWEC  GPTTS
Subjt:  MAGFDLFDRPRGNRSSVRVKVLVLTLKLEFFKEKISHILLSTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS

A0A5D3DUS7 Uncharacterized protein3.7e-0849.35Show/hide
Query:  RPRGNRSSVRVKVLVLTLKLEFFKEKISHIL-----------LSTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS
        + RGNR S++   L  T+  ++  E +S  L           LSTLSVLR+N+A VS GR PLRQRRWEC  GPTTS
Subjt:  RPRGNRSSVRVKVLVLTLKLEFFKEKISHIL-----------LSTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGGTTTTGATTTGTTTGACAGACCAAGAGGAAATAGGTCAAGTGTACGGGTCAAGGTTCTAGTTCTAACACTTAAGCTTGAGTTTTTTAAAGAAAAGATAAGTCA
TATTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAATGCTGTCGTGAGTGTTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCGGGCCCCACTACGT
CGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGGTTTTGATTTGTTTGACAGACCAAGAGGAAATAGGTCAAGTGTACGGGTCAAGGTTCTAGTTCTAACACTTAAGCTTGAGTTTTTTAAAGAAAAGATAAGTCA
TATTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAATGCTGTCGTGAGTGTTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGTTGGGCGGGCCCCACTACGT
CGTAG
Protein sequenceShow/hide protein sequence
MAGFDLFDRPRGNRSSVRVKVLVLTLKLEFFKEKISHILLSTLSVLRDNNAVVSVGRAPLRQRRWECWAGPTTS