CuGenDBv2

Gene ID	Tan0010758
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ty3-gypsy retrotransposon protein
Genome location	LG03:5827235..5827474
RNA-Seq Expression	Tan0010758
Synteny	Tan0010758
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR005162 - Retrotransposon gag domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025354.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

5.5e-36

88.61

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Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVHTLKGNAFDWYTDIEPETIDSWEQFEREFLNRFY
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETC+ AGTRGDLLVKQFV TLKGNAFDWYTD+EPE+IDSWEQ ER+FLNRFY
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVHTLKGNAFDWYTDIEPETIDSWEQFEREFLNRFY

KAA0043322.1 uncharacterized protein E6C27_scaffold110G002330 [Cucumis melo var. makuwa]

5.5e-36

88.61

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Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVHTLKGNAFDWYTDIEPETIDSWEQFEREFLNRFY
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETC+ AGTRGDLLVKQFV TLKGNAFDWYTD+EPE+IDSWEQ ER+FLNRFY
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVHTLKGNAFDWYTDIEPETIDSWEQFEREFLNRFY

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]

5.5e-36

88.61

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Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVHTLKGNAFDWYTDIEPETIDSWEQFEREFLNRFY
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETC+ AGTRGDLLVKQFV TLKGNAFDWYTD+EPE+IDSWEQ ER+FLNRFY
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVHTLKGNAFDWYTDIEPETIDSWEQFEREFLNRFY

KAA0053464.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]

5.5e-36

88.61

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Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVHTLKGNAFDWYTDIEPETIDSWEQFEREFLNRFY
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETC+ AGTRGDLLVKQFV TLKGNAFDWYTD+EPE+IDSWEQ ER+FLNRFY
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVHTLKGNAFDWYTDIEPETIDSWEQFEREFLNRFY

XP_022159413.1 uncharacterized protein LOC111025834 [Momordica charantia]

1.2e-35

87.34

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Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVHTLKGNAFDWYTDIEPETIDSWEQFEREFLNRFY
        MP GYQPPKFQ FDGKGNPKQH+AHFVETC+NAGTRGD LVKQFV TLKGNAFDWYTD+EPETI+SWEQ E+EFLNRFY
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVHTLKGNAFDWYTDIEPETIDSWEQFEREFLNRFY

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SI89 Ty3-gypsy retrotransposon protein

2.7e-36

88.61

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Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVHTLKGNAFDWYTDIEPETIDSWEQFEREFLNRFY
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETC+ AGTRGDLLVKQFV TLKGNAFDWYTD+EPE+IDSWEQ ER+FLNRFY
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVHTLKGNAFDWYTDIEPETIDSWEQFEREFLNRFY

A0A5A7TJ44 Ribonuclease H

2.7e-36

88.61

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Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVHTLKGNAFDWYTDIEPETIDSWEQFEREFLNRFY
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETC+ AGTRGDLLVKQFV TLKGNAFDWYTD+EPE+IDSWEQ ER+FLNRFY
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVHTLKGNAFDWYTDIEPETIDSWEQFEREFLNRFY

A0A5A7TZU9 Ribonuclease H

2.7e-36

88.61

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Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVHTLKGNAFDWYTDIEPETIDSWEQFEREFLNRFY
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETC+ AGTRGDLLVKQFV TLKGNAFDWYTD+EPE+IDSWEQ ER+FLNRFY
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVHTLKGNAFDWYTDIEPETIDSWEQFEREFLNRFY

A0A5A7UE14 Retrotransposon protein putative ty3-gypsy sub-class

2.7e-36

88.61

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Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVHTLKGNAFDWYTDIEPETIDSWEQFEREFLNRFY
        MP GYQPPKFQQFDGKGNPKQHVAHF+ETC+ AGTRGDLLVKQFV TLKGNAFDWYTD+EPE+IDSWEQ ER+FLNRFY
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVHTLKGNAFDWYTDIEPETIDSWEQFEREFLNRFY

A0A6J1DYQ8 uncharacterized protein LOC111025834

5.9e-36

87.34

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Query:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVHTLKGNAFDWYTDIEPETIDSWEQFEREFLNRFY
        MP GYQPPKFQ FDGKGNPKQH+AHFVETC+NAGTRGD LVKQFV TLKGNAFDWYTD+EPETI+SWEQ E+EFLNRFY
Subjt:  MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVHTLKGNAFDWYTDIEPETIDSWEQFEREFLNRFY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCCCACAGGGTACCAACCTCCAAAATTCCAGCAGTTCGACGGGAAGGGCAACCCAAAGCAACACGTTGCACACTTCGTTGAGACTTGCAAAAATGCAGGGACGCGTGG
TGACCTCCTAGTGAAGCAATTCGTGCATACCTTGAAAGGAAATGCTTTTGACTGGTACACCGACATAGAGCCAGAAACGATTGACAGCTGGGAACAATTCGAGAGAGAAT
TCCTGAATCGCTTCTACTGA

mRNA sequence

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Protein sequence

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MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVHTLKGNAFDWYTDIEPETIDSWEQFEREFLNRFY

Tan0010758 (gene) of Snake gourd v1 genome