; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0010837 (gene) of Snake gourd v1 genome

Gene IDTan0010837
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionU11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Genome locationLG09:66436757..66438706
RNA-Seq ExpressionTan0010837
SyntenyTan0010837
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR029071 - Ubiquitin-like domain superfamily
IPR039690 - U11/U12 small nuclear ribonucleoprotein 25kDa protein
IPR040610 - SNRNP25, ubiquitin-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7021772.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma]6.8e-5786.4Show/hide
Query:  MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKL
        M RIEPN PDSCCISPRFRSNSFRRSLRYQRLP +LL LSVLKLDGSSFEVQVAR A V  LR+AVESVFCGMSM++EDVKISWPHVW HFCLCYKHYKL
Subjt:  MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKL

Query:  IDDKSDIKRFGIRDGDQLHFMNRVA
        ID+KS IKRFGIRDGD LHF+NRVA
Subjt:  IDDKSDIKRFGIRDGDQLHFMNRVA

XP_022927502.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita moschata]6.8e-5786.4Show/hide
Query:  MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKL
        M RIEPN PDSCCISPRFRSNSFRRSLRYQRLP +LL LSVLKLDGSSFEVQVAR A V  LR+AVESVFCGMSM++EDVKISWPHVW HFCLCYKHYKL
Subjt:  MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKL

Query:  IDDKSDIKRFGIRDGDQLHFMNRVA
        ID+KS IKRFGIRDGD LHF+NRVA
Subjt:  IDDKSDIKRFGIRDGDQLHFMNRVA

XP_022973901.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita maxima]4.4e-5684.8Show/hide
Query:  MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKL
        M RIEPN PDSCCISPRFRSNSFRRSLRYQRLP +LL LSVLKLDGSSFEVQVAR A V  LR+AVESVFCGM M++EDVKISWPHVW HFCLCYKHYKL
Subjt:  MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKL

Query:  IDDKSDIKRFGIRDGDQLHFMNRVA
        ID+KS IKRFGIRDGD LHF+NR+A
Subjt:  IDDKSDIKRFGIRDGDQLHFMNRVA

XP_023531556.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbita pepo subsp. pepo]4.0e-5786.4Show/hide
Query:  MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKL
        M+RIEPN PDSCCISPRFRSNSFRRSLRYQRLP +LL LSVLKLDGSSFEVQVAR A V  LR+AVESVFCGMSM++EDVKISWPHVW HFCLCYKHYKL
Subjt:  MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKL

Query:  IDDKSDIKRFGIRDGDQLHFMNRVA
        ID+KS IKRFGIRDGD LHF+NRVA
Subjt:  IDDKSDIKRFGIRDGDQLHFMNRVA

XP_023531557.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbita pepo subsp. pepo]4.0e-5786.4Show/hide
Query:  MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKL
        M+RIEPN PDSCCISPRFRSNSFRRSLRYQRLP +LL LSVLKLDGSSFEVQVAR A V  LR+AVESVFCGMSM++EDVKISWPHVW HFCLCYKHYKL
Subjt:  MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKL

Query:  IDDKSDIKRFGIRDGDQLHFMNRVA
        ID+KS IKRFGIRDGD LHF+NRVA
Subjt:  IDDKSDIKRFGIRDGDQLHFMNRVA

TrEMBL top hitse value%identityAlignment
A0A0A0LT94 Ubiquitin_4 domain-containing protein1.9e-5282.64Show/hide
Query:  MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKL
        M+ IEP  PDSCCISPRF SNSFRRSLRY RLPPQLLRLSVLKLDGSSFEVQV RTA V  +RDAVESVFC MSM+KED  ISWPHVWGHFCLCYKH+KL
Subjt:  MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKL

Query:  IDDKSDIKRFGIRDGDQLHFM
        +DDKS I+ FGIRDGDQLHF+
Subjt:  IDDKSDIKRFGIRDGDQLHFM

A0A1S3BA12 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X23.2e-5281.82Show/hide
Query:  MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKL
        M++IEP  PDSCCISPRF +NSFRRSLRY RLPPQLLRLSVLKLDGSSFEVQV RTA V  +RDAVESVFC MSM+KED  ISWPHVWGHFCLCYKH+KL
Subjt:  MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKL

Query:  IDDKSDIKRFGIRDGDQLHFM
        +DDKS I+ FGIRDGDQLHF+
Subjt:  IDDKSDIKRFGIRDGDQLHFM

A0A5A7U4H4 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X23.2e-5281.82Show/hide
Query:  MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKL
        M++IEP  PDSCCISPRF +NSFRRSLRY RLPPQLLRLSVLKLDGSSFEVQV RTA V  +RDAVESVFC MSM+KED  ISWPHVWGHFCLCYKH+KL
Subjt:  MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKL

Query:  IDDKSDIKRFGIRDGDQLHFM
        +DDKS I+ FGIRDGDQLHF+
Subjt:  IDDKSDIKRFGIRDGDQLHFM

A0A6J1EHC7 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like3.3e-5786.4Show/hide
Query:  MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKL
        M RIEPN PDSCCISPRFRSNSFRRSLRYQRLP +LL LSVLKLDGSSFEVQVAR A V  LR+AVESVFCGMSM++EDVKISWPHVW HFCLCYKHYKL
Subjt:  MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKL

Query:  IDDKSDIKRFGIRDGDQLHFMNRVA
        ID+KS IKRFGIRDGD LHF+NRVA
Subjt:  IDDKSDIKRFGIRDGDQLHFMNRVA

A0A6J1I9W9 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like2.1e-5684.8Show/hide
Query:  MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKL
        M RIEPN PDSCCISPRFRSNSFRRSLRYQRLP +LL LSVLKLDGSSFEVQVAR A V  LR+AVESVFCGM M++EDVKISWPHVW HFCLCYKHYKL
Subjt:  MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKL

Query:  IDDKSDIKRFGIRDGDQLHFMNRVA
        ID+KS IKRFGIRDGD LHF+NR+A
Subjt:  IDDKSDIKRFGIRDGDQLHFMNRVA

SwissProt top hitse value%identityAlignment
Q3ZBQ4 U11/U12 small nuclear ribonucleoprotein 25 kDa protein2.8e-0528.26Show/hide
Query:  QLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKED--VKISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHFMNRV
        Q + + V K+DG    V V + A V +L+ A++  +  +  ++E     ISW +VW  + L     KL +D+  ++ +GIR+ D++ F+ ++
Subjt:  QLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKED--VKISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHFMNRV

Q84WS8 U11/U12 small nuclear ribonucleoprotein 25 kDa protein1.3e-1039.53Show/hide
Query:  LRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVK-ISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHFM
        +RLSV+KLDGSS +V V  +A +++L+  ++     M       + ISW HVW +FCL   + KL+DD + ++  GIR+  Q+ FM
Subjt:  LRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVK-ISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHFM

Q8VIK1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein2.2e-0528.26Show/hide
Query:  QLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKED--VKISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHFMNRV
        Q + + V K+DG    V V + A V +L+ A++  +  +  ++E     ISW +VW  + L     KL +D+  ++ +GIR+ D++ F+ ++
Subjt:  QLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKED--VKISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHFMNRV

Q9BV90 U11/U12 small nuclear ribonucleoprotein 25 kDa protein1.7e-0528.26Show/hide
Query:  QLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKED--VKISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHFMNRV
        Q + + V K+DG    V V ++A V +L+ A++  +  +  ++E     ISW +VW  + L     KL +D+  ++ +GIR+ D++ F+ ++
Subjt:  QLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKED--VKISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHFMNRV

Arabidopsis top hitse value%identityAlignment
AT1G80060.1 Ubiquitin-like superfamily protein4.8e-2446.34Show/hide
Query:  IEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQ-LLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKLID
        I+P F  S  ++    S S RRS  Y +LPPQ  ++LSV+KL+GS F+V+VA+   V  L+ AVE VF    ++   + ISW HVWGHFCLCY+  +L++
Subjt:  IEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQ-LLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKLID

Query:  DKSDIKRFGIRDGDQLHFMNRVA
        DK+ I+  G+ DGDQLHF+  ++
Subjt:  DKSDIKRFGIRDGDQLHFMNRVA

AT3G07860.1 Ubiquitin-like superfamily protein9.3e-1239.53Show/hide
Query:  LRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVK-ISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHFM
        +RLSV+KLDGSS +V V  +A +++L+  ++     M       + ISW HVW +FCL   + KL+DD + ++  GIR+  Q+ FM
Subjt:  LRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVK-ISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHFM

AT4G32270.1 Ubiquitin-like superfamily protein2.4e-2348.04Show/hide
Query:  RRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHFMNR
        RRS  Y ++P + ++L+VLKLDGSSF +QV +TA V  L+ AVE+ F  + +     KISWPHVWG FCL Y+  +LI++   +  FGI+DGDQL F+  
Subjt:  RRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHFMNR

Query:  VA
        ++
Subjt:  VA

AT4G32270.2 Ubiquitin-like superfamily protein1.0e-1846.81Show/hide
Query:  LPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHFMNRVA
        +P + ++L+VLKLDGSSF   V +TA V  L+ AVE+ F  + +     KISWPHVWG FCL Y+  +LI++   +  FGI+DGDQL F+  ++
Subjt:  LPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHFMNRVA

AT5G25340.1 Ubiquitin-like superfamily protein3.1e-2350Show/hide
Query:  RRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHFMNR
        RR+  Y +LP + +RLSVLKLDGSSF+V V  +A V +L+ A+E+ F  +   K   KISW HVWGHFCLC+   KLI D   I  +G++DGD++ F N 
Subjt:  RRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKLIDDKSDIKRFGIRDGDQLHFMNR

Query:  VA
        V+
Subjt:  VA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGCATTGAACCGAATTTTCCGGATTCTTGCTGTATCTCGCCTCGGTTTCGGAGCAACAGTTTTCGCCGGAGTCTTCGCTACCAGAGGCTTCCGCCACAGCTCCT
CCGTCTCTCCGTCTTAAAATTGGACGGCTCTTCCTTCGAGGTGCAAGTTGCAAGGACAGCGAAAGTGGAAAATCTTAGAGACGCGGTGGAGAGTGTTTTCTGTGGAATGT
CGATGGATAAAGAAGATGTCAAGATTTCATGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTACAAGCTCATCGATGACAAATCAGATATCAAACGCTTT
GGAATCAGGGATGGTGATCAGCTGCATTTTATGAACCGTGTAGCTTAA
mRNA sequenceShow/hide mRNA sequence
AAAAACTTAATTTTAAAAAAGCGAAAATATTTTGACCACATGAAGGAAAGAAAAAAGTAAGAAGGAAATAAAAACAGTGTGGATTCAGGGTCCCTGATAACGGTTTCCCG
CTTTCAGAGCTAAACCAACCAACAAACCAAAAAGTCTCTTCTGTCAACCTCTTTCAGGCCCTCATTTTTCCCCCCCATTTTTTCAAACCCTAGACCTGACTGAAAATCGC
ATTCAGAGTTCAAGACTCTGCTCTTCCAAAATCAATTACCTGAAAATTCTCCATTCGTCTTTCTACTACCTGAAATTTTGGCTACAGCTCGATTCATGGCTCGCATTGAA
CCGAATTTTCCGGATTCTTGCTGTATCTCGCCTCGGTTTCGGAGCAACAGTTTTCGCCGGAGTCTTCGCTACCAGAGGCTTCCGCCACAGCTCCTCCGTCTCTCCGTCTT
AAAATTGGACGGCTCTTCCTTCGAGGTGCAAGTTGCAAGGACAGCGAAAGTGGAAAATCTTAGAGACGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGGATAAAGAAG
ATGTCAAGATTTCATGGCCACATGTGTGGGGTCATTTTTGCTTATGCTATAAACATTACAAGCTCATCGATGACAAATCAGATATCAAACGCTTTGGAATCAGGGATGGT
GATCAGCTGCATTTTATGAACCGTGTAGCTTAATTTTTGCCAAGAATCTGTGGATTTGAGATGCCCCAAAAGAATAAATGGAAAGGACGTTGGTTGAACGGCTTCTGGTA
TAAAGTGGTCAGAAGGTTTTGGGTTTGATTATTGTAAAGTGGTCAGATGGGTCTTTTTCTTTTCCTTTCCTCATGTTAAATTGGAATTCTTAGTATCTCTCTCTCTATAT
ATTGGATGAAGTACATTTCATTTGTGCCTTTCAAGACTCCATTTTCCTTTCTTTCAATCCAAAAATAAAGTCCATTAGTTCGATTTTCTCAGGTCCCGTTTGATAATCAT
TTGGTTTTTAGTTTTTGAAAATTAAGCTTAAAAATATTACTTCTACGGATAGGTTTCTATGTTTTCTTATTTACTTTGTATCTATGTTTTAAAAAACAAAGCTAAGTTTT
GAAAACTAAAAAAAATAGTTTTCAAAAACTTGTTTTGTTTTTGAAATTTGGCTAGAAACTTAAGTCGTATCTTTGGAAAGCATTGTAGAGAAGATGGAGAGAATTTGTTA
AAAAACAAGTATAATTTTTCAAAACCAAAAAACAAAAATCAAATGGTTATCAAACGGGATCTAAGGTATTTAAATTACTTAAAGAAGAGAACAGCAAGGAAGAATGGCGA
AGAAGATGCCCAAGTCAAGTGATCTGAAATTGATACATTTCTTTTGAGAATCTGAGATGATGAATGTCAATGCCTGATCTACTTGGTGCATGGGAGAGTGCAAGCTCTAC
AGTGTGAAGCTATGAAGTCTCTGAAGATTTTCAGCTGAGTATATATGTTTTGGTGGCC
Protein sequenceShow/hide protein sequence
MARIEPNFPDSCCISPRFRSNSFRRSLRYQRLPPQLLRLSVLKLDGSSFEVQVARTAKVENLRDAVESVFCGMSMDKEDVKISWPHVWGHFCLCYKHYKLIDDKSDIKRF
GIRDGDQLHFMNRVA